RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 RTN4Q9NQC3 1192 aaKnown RBP9□□□□□ -0.97
CSMD3-209ENST00000519485 ADGRG1Q9Y653 693 aa8.99□□□□□ -0.97
CSMD3-209ENST00000519485 RNF223E7ERA6 249 aa8.97□□□□□ -0.97
CSMD3-209ENST00000519485 ACTN4O43707 911 aaKnown RBP8.97□□□□□ -0.97
CSMD3-209ENST00000519485 BLOC1S3Q6QNY0 202 aa8.97□□□□□ -0.97
CSMD3-209ENST00000519485 KCNV2Q8TDN2 545 aa8.97□□□□□ -0.97
CSMD3-209ENST00000519485 TRIM67Q6ZTA4 783 aa8.96□□□□□ -0.98
CSMD3-209ENST00000519485 ANKLE1Q8NAG6 615 aa8.96□□□□□ -0.98
CSMD3-209ENST00000519485 SLC19A1P41440 591 aa8.95□□□□□ -0.98
CSMD3-209ENST00000519485 KMT5BQ4FZB7 885 aa8.95□□□□□ -0.98
CSMD3-209ENST00000519485 EMID1Q96A84 441 aaPredicted RBP8.95□□□□□ -0.98
CSMD3-209ENST00000519485 PRR20EP86478 221 aa8.94□□□□□ -0.98
CSMD3-209ENST00000519485 PRR20CP86479 221 aa8.94□□□□□ -0.98
CSMD3-209ENST00000519485 PRR20DP86480 221 aa8.94□□□□□ -0.98
CSMD3-209ENST00000519485 PRR20BP86481 221 aa8.94□□□□□ -0.98
CSMD3-209ENST00000519485 PRR20AP86496 221 aa8.94□□□□□ -0.98
CSMD3-209ENST00000519485 RCCD1A6NED2 376 aa8.93□□□□□ -0.98
CSMD3-209ENST00000519485 SPRYD7Q5W111 196 aa8.93□□□□□ -0.98
CSMD3-209ENST00000519485 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.92□□□□□ -0.98
CSMD3-209ENST00000519485 ZNF787Q6DD87 383 aa8.92□□□□□ -0.98
CSMD3-209ENST00000519485 ZNF598Q86UK7 904 aaKnown RBP8.92□□□□□ -0.98
CSMD3-209ENST00000519485 CFHP08603 1231 aa8.91□□□□□ -0.98
CSMD3-209ENST00000519485 TSHZ2Q9NRE2 1034 aa8.91□□□□□ -0.98
CSMD3-209ENST00000519485 TLL1O43897 1013 aa8.9□□□□□ -0.98
CSMD3-209ENST00000519485 DGAT1O75907 488 aa8.9□□□□□ -0.98
CSMD3-209ENST00000519485 FCHSD2O94868 740 aa8.9□□□□□ -0.98
CSMD3-209ENST00000519485 ADH1BP00325 375 aa8.89□□□□□ -0.99
CSMD3-209ENST00000519485 SLC10A3P09131 477 aa8.89□□□□□ -0.99
CSMD3-209ENST00000519485 P3H3Q8IVL6 736 aa8.89□□□□□ -0.99
CSMD3-209ENST00000519485 NR1I2O75469 434 aa8.88□□□□□ -0.99
CSMD3-209ENST00000519485 S1PR4O95977 384 aa8.88□□□□□ -0.99
CSMD3-209ENST00000519485 OATP04181 439 aa8.88□□□□□ -0.99
CSMD3-209ENST00000519485 NUTM2FA1L443 756 aa8.87□□□□□ -0.99
CSMD3-209ENST00000519485 LIAT1Q6ZQX7 453 aa8.87□□□□□ -0.99
CSMD3-209ENST00000519485 PXYLP1Q8TE99 480 aa8.87□□□□□ -0.99
CSMD3-209ENST00000519485 MYT1Q01538 1121 aa8.86□□□□□ -0.99
CSMD3-209ENST00000519485 GDF9O60383 454 aa8.85□□□□□ -0.99
CSMD3-209ENST00000519485 PKDCCQ504Y2 493 aa8.85□□□□□ -0.99
CSMD3-209ENST00000519485 FAM161AQ3B820 660 aa8.84□□□□□ -0.99
CSMD3-209ENST00000519485 RSPH4AQ5TD94 716 aa8.84□□□□□ -0.99
CSMD3-209ENST00000519485 ZNF697Q5TEC3 545 aa8.84□□□□□ -0.99
CSMD3-209ENST00000519485 SLC6A16Q9GZN6 736 aa8.84□□□□□ -0.99
CSMD3-209ENST00000519485 PPEF1O14829 653 aaPredicted RBP8.83□□□□□ -1
CSMD3-209ENST00000519485 HIC1Q14526 733 aa8.83□□□□□ -1
CSMD3-209ENST00000519485 LMOD2Q6P5Q4 547 aa8.83□□□□□ -1
CSMD3-209ENST00000519485 METTL3Q86U44 580 aaKnown RBP8.83□□□□□ -1
CSMD3-209ENST00000519485 SCUBE3Q8IX30 993 aa8.83□□□□□ -1
CSMD3-209ENST00000519485 ZNF775Q96BV0 537 aaPredicted RBP8.83□□□□□ -1
CSMD3-209ENST00000519485 SEMA3EO15041 775 aa8.81□□□□□ -1
CSMD3-209ENST00000519485 PLA2G2CQ5R387 149 aa8.8□□□□□ -1
CSMD3-209ENST00000519485 SPSB2Q99619 263 aa8.79□□□□□ -1
CSMD3-209ENST00000519485 RPIAP49247 311 aa8.78□□□□□ -1
CSMD3-209ENST00000519485 TESPA1A2RU30 521 aaPredicted RBP8.77□□□□□ -1.01
CSMD3-209ENST00000519485 DAXXQ9UER7 740 aaPredicted RBP8.77□□□□□ -1.01
CSMD3-209ENST00000519485 FAM187AA6NFU0 413 aa8.76□□□□□ -1.01
CSMD3-209ENST00000519485 CRIPAKQ8N1N5 446 aa8.76□□□□□ -1.01
CSMD3-209ENST00000519485 THAP11Q96EK4 314 aa8.76□□□□□ -1.01
CSMD3-209ENST00000519485 PKD2L1Q9P0L9 805 aa8.76□□□□□ -1.01
CSMD3-209ENST00000519485 TNFRSF10AO00220 468 aa8.75□□□□□ -1.01
CSMD3-209ENST00000519485 GNPATO15228 680 aa8.75□□□□□ -1.01
CSMD3-209ENST00000519485 GPR37O15354 613 aa8.75□□□□□ -1.01
CSMD3-209ENST00000519485 PUS10Q3MIT2 529 aaKnown RBP8.75□□□□□ -1.01
CSMD3-209ENST00000519485 MORN1Q5T089 497 aa8.75□□□□□ -1.01
CSMD3-209ENST00000519485 SALL2Q9Y467 1007 aaPredicted RBP8.75□□□□□ -1.01
CSMD3-209ENST00000519485 SMYD5Q6GMV2 418 aa8.74□□□□□ -1.01
CSMD3-209ENST00000519485 POTECB2RU33 542 aa8.73□□□□□ -1.01
CSMD3-209ENST00000519485 AAASQ9NRG9 546 aa8.73□□□□□ -1.01
CSMD3-209ENST00000519485 AVPP01185 164 aa8.72□□□□□ -1.01
CSMD3-209ENST00000519485 ATP6V1AP38606 617 aa8.72□□□□□ -1.01
CSMD3-209ENST00000519485 TOR4AQ9NXH8 423 aa8.72□□□□□ -1.01
CSMD3-209ENST00000519485 RBM26Q5T8P6 1007 aaKnown RBP8.71□□□□□ -1.02
CSMD3-209ENST00000519485 CD2BP2O95400 341 aaKnown RBP8.7□□□□□ -1.02
CSMD3-209ENST00000519485 FMNL1O95466 1100 aaPredicted RBP8.7□□□□□ -1.02
CSMD3-209ENST00000519485 FECHP22830 423 aa8.7□□□□□ -1.02
CSMD3-209ENST00000519485 GCGRP47871 477 aa8.7□□□□□ -1.02
CSMD3-209ENST00000519485 FUT2Q10981 343 aa8.7□□□□□ -1.02
CSMD3-209ENST00000519485 SULF1Q8IWU6 871 aa8.7□□□□□ -1.02
CSMD3-209ENST00000519485 FAM160A2Q8N612 972 aaPredicted RBP8.7□□□□□ -1.02
CSMD3-209ENST00000519485 RDH13Q8NBN7 331 aa8.7□□□□□ -1.02
CSMD3-209ENST00000519485 MSS51Q4VC12 460 aa8.69□□□□□ -1.02
CSMD3-209ENST00000519485 LCE2AQ5TA79 106 aaPredicted RBP8.69□□□□□ -1.02
CSMD3-209ENST00000519485 FCF1Q9Y324 198 aaKnown RBP8.69□□□□□ -1.02
CSMD3-209ENST00000519485 ST8SIA5O15466 376 aa8.68□□□□□ -1.02
CSMD3-209ENST00000519485 BRICD5Q6PL45 260 aa8.68□□□□□ -1.02
CSMD3-209ENST00000519485 SLC27A5Q9Y2P5 690 aa8.68□□□□□ -1.02
CSMD3-209ENST00000519485 DDX11L8A8MPP1 907 aa8.67□□□□□ -1.02
CSMD3-209ENST00000519485 SMCPP49901 116 aaPredicted RBP8.67□□□□□ -1.02
CSMD3-209ENST00000519485 FOXC1Q12948 553 aa8.67□□□□□ -1.02
CSMD3-209ENST00000519485 CTC1Q2NKJ3 1217 aa8.67□□□□□ -1.02
CSMD3-209ENST00000519485 TREML4Q6UXN2 200 aa8.67□□□□□ -1.02
CSMD3-209ENST00000519485 PHOX2BQ99453 314 aa8.66□□□□□ -1.02
CSMD3-209ENST00000519485 GRIPAP1Q4V328 841 aa8.64□□□□□ -1.03
CSMD3-209ENST00000519485 CYP4X1Q8N118 509 aa8.63□□□□□ -1.03
CSMD3-209ENST00000519485 MMP16P51512 607 aa8.62□□□□□ -1.03
CSMD3-209ENST00000519485 PRDM9Q9NQV7 894 aa8.62□□□□□ -1.03
CSMD3-209ENST00000519485 WNT7AO00755 349 aa8.61□□□□□ -1.03
CSMD3-209ENST00000519485 AXIN1O15169 862 aa8.61□□□□□ -1.03
CSMD3-209ENST00000519485 Q3C1V9 767 aa8.61□□□□□ -1.03
CSMD3-209ENST00000519485 ZBTB24O43167 697 aaPredicted RBP8.6□□□□□ -1.03
CSMD3-209ENST00000519485 RNF19BQ6ZMZ0 732 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms