RNA–Protein interactions for RNA: ENST00000517417.2

PCDHGA1-202, Transcript of protocadherin gamma subfamily A, 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PCDHGA1, Length 4,604 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1-202ENST00000517417 KCNJ4P48050 445 aa13.7□□□□□ -0.22
PCDHGA1-202ENST00000517417 ITPRIPQ8IWB1 547 aa13.7□□□□□ -0.22
PCDHGA1-202ENST00000517417 CENPJQ9HC77 1338 aaPredicted RBP13.69□□□□□ -0.22
PCDHGA1-202ENST00000517417 PRKCSHP14314 528 aaPredicted RBP13.69□□□□□ -0.22
PCDHGA1-202ENST00000517417 APAF1O14727 1248 aa13.69□□□□□ -0.22
PCDHGA1-202ENST00000517417 RRP7AQ9Y3A4 280 aaKnown RBP13.69□□□□□ -0.22
PCDHGA1-202ENST00000517417 CAMSAP2Q08AD1 1489 aa13.69□□□□□ -0.22
PCDHGA1-202ENST00000517417 C9orf84Q5VXU9 1444 aa13.68□□□□□ -0.22
PCDHGA1-202ENST00000517417 IPO8O15397 1037 aaKnown RBP13.68□□□□□ -0.22
PCDHGA1-202ENST00000517417 FGD1P98174 961 aa13.68□□□□□ -0.22
PCDHGA1-202ENST00000517417 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.68□□□□□ -0.22
PCDHGA1-202ENST00000517417 PTMAP06454 111 aaKnown RBP13.68□□□□□ -0.22
PCDHGA1-202ENST00000517417 PLCB2Q00722 1185 aa13.68□□□□□ -0.22
PCDHGA1-202ENST00000517417 GZF1Q9H116 711 aaPredicted RBP13.67□□□□□ -0.22
PCDHGA1-202ENST00000517417 TEX14Q8IWB6 1497 aa13.67□□□□□ -0.22
PCDHGA1-202ENST00000517417 FRAT2O75474 233 aaPredicted RBP13.66□□□□□ -0.22
PCDHGA1-202ENST00000517417 TERF2IPQ9NYB0 399 aa13.66□□□□□ -0.22
PCDHGA1-202ENST00000517417 COG6Q9Y2V7 657 aa13.66□□□□□ -0.22
PCDHGA1-202ENST00000517417 RNF123Q5XPI4 1314 aa13.66□□□□□ -0.22
PCDHGA1-202ENST00000517417 E9PSI1 815 aa13.66□□□□□ -0.22
PCDHGA1-202ENST00000517417 C20orf194Q5TEA3 1177 aa13.66□□□□□ -0.22
PCDHGA1-202ENST00000517417 PMFBP1Q8TBY8 1022 aa13.66□□□□□ -0.22
PCDHGA1-202ENST00000517417 NAP1L2Q9ULW6 460 aaPredicted RBP13.66□□□□□ -0.22
PCDHGA1-202ENST00000517417 SMC4Q9NTJ3 1288 aa13.65□□□□□ -0.22
PCDHGA1-202ENST00000517417 HSCBQ8IWL3 235 aa13.65□□□□□ -0.22
PCDHGA1-202ENST00000517417 NPHP1O15259 732 aa13.64□□□□□ -0.23
PCDHGA1-202ENST00000517417 PPP2R1AP30153 589 aa13.64□□□□□ -0.23
PCDHGA1-202ENST00000517417 RWDD1Q9H446 243 aaPredicted RBP13.64□□□□□ -0.23
PCDHGA1-202ENST00000517417 ZRSR1Q15695 479 aaKnown RBP13.64□□□□□ -0.23
PCDHGA1-202ENST00000517417 CGNL1Q0VF96 1302 aa13.64□□□□□ -0.23
PCDHGA1-202ENST00000517417 EIF3AQ14152 1382 aaKnown RBP13.64□□□□□ -0.23
PCDHGA1-202ENST00000517417 BCL2L13Q9BXK5 485 aa13.63□□□□□ -0.23
PCDHGA1-202ENST00000517417 GCC2Q8IWJ2 1684 aa13.63□□□□□ -0.23
PCDHGA1-202ENST00000517417 KDM6BO15054 1643 aa13.63□□□□□ -0.23
PCDHGA1-202ENST00000517417 SPATA31E1Q6ZUB1 1445 aa13.62□□□□□ -0.23
PCDHGA1-202ENST00000517417 ATP10BO94823 1461 aa13.62□□□□□ -0.23
PCDHGA1-202ENST00000517417 ELL2O00472 640 aaPredicted RBP13.62□□□□□ -0.23
PCDHGA1-202ENST00000517417 GOLGA6L3A6NEY3 463 aa13.62□□□□□ -0.23
PCDHGA1-202ENST00000517417 MFAP1P55081 439 aaKnown RBP13.61□□□□□ -0.23
PCDHGA1-202ENST00000517417 NGDNQ8NEJ9 315 aaKnown RBP13.61□□□□□ -0.23
PCDHGA1-202ENST00000517417 KIF14Q15058 1648 aa13.61□□□□□ -0.23
PCDHGA1-202ENST00000517417 LTV1Q96GA3 475 aaPredicted RBP13.61□□□□□ -0.23
PCDHGA1-202ENST00000517417 ZNF330Q9Y3S2 320 aaPredicted RBP13.61□□□□□ -0.23
PCDHGA1-202ENST00000517417 RALGAPBQ86X10 1494 aa13.61□□□□□ -0.23
PCDHGA1-202ENST00000517417 ERBINQ96RT1 1412 aa13.61□□□□□ -0.23
PCDHGA1-202ENST00000517417 GPATCH8Q9UKJ3 1502 aaKnown RBP13.6□□□□□ -0.23
PCDHGA1-202ENST00000517417 CSB-PGBD3P0DP91 1061 aa13.6□□□□□ -0.23
PCDHGA1-202ENST00000517417 DNTTIP2Q5QJE6 756 aaKnown RBP13.6□□□□□ -0.23
PCDHGA1-202ENST00000517417 RSPH6AQ9H0K4 717 aa13.6□□□□□ -0.23
PCDHGA1-202ENST00000517417 CALD1Q05682 793 aaKnown RBP13.59□□□□□ -0.23
PCDHGA1-202ENST00000517417 PANK1Q8TE04 598 aa13.59□□□□□ -0.23
PCDHGA1-202ENST00000517417 BCAR3O75815 825 aa13.59□□□□□ -0.23
PCDHGA1-202ENST00000517417 SLC4A10Q6U841 1118 aa13.59□□□□□ -0.23
PCDHGA1-202ENST00000517417 PZPP20742 1482 aa13.58□□□□□ -0.24
PCDHGA1-202ENST00000517417 LRPPRCP42704 1394 aaKnown RBP13.57□□□□□ -0.24
PCDHGA1-202ENST00000517417 EID1Q9Y6B2 187 aa13.57□□□□□ -0.24
PCDHGA1-202ENST00000517417 MINK1Q8N4C8 1332 aaPredicted RBP13.57□□□□□ -0.24
PCDHGA1-202ENST00000517417 CHD1O14646 1710 aa13.57□□□□□ -0.24
PCDHGA1-202ENST00000517417 PLEKHH2Q8IVE3 1493 aa13.57□□□□□ -0.24
PCDHGA1-202ENST00000517417 KDM5BQ9UGL1 1544 aa13.56□□□□□ -0.24
PCDHGA1-202ENST00000517417 STK31Q9BXU1 1019 aa13.56□□□□□ -0.24
PCDHGA1-202ENST00000517417 VGFO15240 615 aaPredicted RBP13.56□□□□□ -0.24
PCDHGA1-202ENST00000517417 AMPHP49418 695 aa13.56□□□□□ -0.24
PCDHGA1-202ENST00000517417 PARD3Q8TEW0 1356 aa13.55□□□□□ -0.24
PCDHGA1-202ENST00000517417 DNMT1P26358 1616 aaKnown RBP13.55□□□□□ -0.24
PCDHGA1-202ENST00000517417 TULP1O00294 542 aaPredicted RBP13.54□□□□□ -0.24
PCDHGA1-202ENST00000517417 ERCC6L2Q5T890 1561 aa13.54□□□□□ -0.24
PCDHGA1-202ENST00000517417 ABCA8O94911 1581 aa13.54□□□□□ -0.24
PCDHGA1-202ENST00000517417 GOLGA6L4A6NEF3 574 aa13.54□□□□□ -0.24
PCDHGA1-202ENST00000517417 MCCP23508 829 aa13.54□□□□□ -0.24
PCDHGA1-202ENST00000517417 DISP3Q9P2K9 1392 aa13.54□□□□□ -0.24
PCDHGA1-202ENST00000517417 DENND4BO75064 1496 aaPredicted RBP13.54□□□□□ -0.24
PCDHGA1-202ENST00000517417 SLFN5Q08AF3 891 aa13.53□□□□□ -0.24
PCDHGA1-202ENST00000517417 DUSP27Q5VZP5 1158 aa13.53□□□□□ -0.24
PCDHGA1-202ENST00000517417 NGEFQ8N5V2 710 aa13.53□□□□□ -0.24
PCDHGA1-202ENST00000517417 CDK11BP21127 795 aaKnown RBP13.52□□□□□ -0.24
PCDHGA1-202ENST00000517417 AFAP1Q8N556 730 aa13.52□□□□□ -0.24
PCDHGA1-202ENST00000517417 KIAA1211Q6ZU35 1233 aa13.52□□□□□ -0.25
PCDHGA1-202ENST00000517417 PDE3AQ14432 1141 aa13.5□□□□□ -0.25
PCDHGA1-202ENST00000517417 GBP4Q96PP9 640 aa13.5□□□□□ -0.25
PCDHGA1-202ENST00000517417 FAM43AQ8N2R8 423 aa13.5□□□□□ -0.25
PCDHGA1-202ENST00000517417 EVC2Q86UK5 1308 aa13.5□□□□□ -0.25
PCDHGA1-202ENST00000517417 ARHGAP5Q13017 1502 aa13.49□□□□□ -0.25
PCDHGA1-202ENST00000517417 TRIM6-TRIM34B2RNG4 842 aa13.49□□□□□ -0.25
PCDHGA1-202ENST00000517417 ZKSCAN2Q63HK3 967 aa13.49□□□□□ -0.25
PCDHGA1-202ENST00000517417 FOXD4L1Q9NU39 408 aa13.49□□□□□ -0.25
PCDHGA1-202ENST00000517417 UHRF1BP1Q6BDS2 1440 aa13.49□□□□□ -0.25
PCDHGA1-202ENST00000517417 TMEM132EQ6IEE7 984 aa13.48□□□□□ -0.25
PCDHGA1-202ENST00000517417 AEBP2Q6ZN18 517 aaPredicted RBP13.48□□□□□ -0.25
PCDHGA1-202ENST00000517417 RUNDC1Q96C34 613 aa13.48□□□□□ -0.25
PCDHGA1-202ENST00000517417 C8orf34Q49A92 452 aa13.48□□□□□ -0.25
PCDHGA1-202ENST00000517417 PDZRN3Q9UPQ7 1066 aa13.48□□□□□ -0.25
PCDHGA1-202ENST00000517417 CHMP3Q9Y3E7 222 aa13.48□□□□□ -0.25
PCDHGA1-202ENST00000517417 ABCC10Q5T3U5 1492 aa13.47□□□□□ -0.25
PCDHGA1-202ENST00000517417 DDX11L8A8MPP1 907 aa13.47□□□□□ -0.25
PCDHGA1-202ENST00000517417 PER1O15534 1290 aaPredicted RBP13.47□□□□□ -0.25
PCDHGA1-202ENST00000517417 COG3Q96JB2 828 aa13.47□□□□□ -0.25
PCDHGA1-202ENST00000517417 CHMP5Q9NZZ3 219 aa13.47□□□□□ -0.25
PCDHGA1-202ENST00000517417 ARHGEF12Q9NZN5 1544 aa13.47□□□□□ -0.25
PCDHGA1-202ENST00000517417 NOL8Q76FK4 1167 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms