RNA–Protein interactions for RNA: ENST00000515343.1

AC025539.1-201, humanhuman

TSL 2 BASIC

Gene AC025539.1, Length 4,019 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC025539.1-201ENST00000515343 RCCD1A6NED2 376 aa3.59□□□□□ -1.83
AC025539.1-201ENST00000515343 C3orf80F5H4A9 247 aa3.59□□□□□ -1.83
AC025539.1-201ENST00000515343 GCGRP47871 477 aa3.59□□□□□ -1.83
AC025539.1-201ENST00000515343 TMEM259Q4ZIN3 620 aa3.59□□□□□ -1.83
AC025539.1-201ENST00000515343 SPNS2Q8IVW8 549 aa3.59□□□□□ -1.83
AC025539.1-201ENST00000515343 POTEB3A0JP26 581 aa3.59□□□□□ -1.84
AC025539.1-201ENST00000515343 POTEBQ6S5H4 581 aa3.59□□□□□ -1.84
AC025539.1-201ENST00000515343 SPIRE2Q8WWL2 714 aa3.59□□□□□ -1.84
AC025539.1-201ENST00000515343 LILRB3O75022 631 aa3.58□□□□□ -1.84
AC025539.1-201ENST00000515343 FAM98CQ17RN3 349 aaKnown RBP3.58□□□□□ -1.84
AC025539.1-201ENST00000515343 MYSM1Q5VVJ2 828 aa3.58□□□□□ -1.84
AC025539.1-201ENST00000515343 FNBP4Q8N3X1 1017 aaPredicted RBP3.58□□□□□ -1.84
AC025539.1-201ENST00000515343 TIMELESSQ9UNS1 1208 aa3.58□□□□□ -1.84
AC025539.1-201ENST00000515343 RSBN1LQ6PCB5 846 aaPredicted RBP3.58□□□□□ -1.84
AC025539.1-201ENST00000515343 RBM33Q96EV2 1170 aaKnown RBP3.58□□□□□ -1.84
AC025539.1-201ENST00000515343 PCMTD1Q96MG8 357 aaPredicted RBP3.58□□□□□ -1.84
AC025539.1-201ENST00000515343 DESI1Q6ICB0 168 aa3.57□□□□□ -1.84
AC025539.1-201ENST00000515343 SPDYE5A6NIY4 337 aa3.57□□□□□ -1.84
AC025539.1-201ENST00000515343 DMRTA1Q5VZB9 504 aa3.57□□□□□ -1.84
AC025539.1-201ENST00000515343 NUDT18Q6ZVK8 323 aa3.57□□□□□ -1.84
AC025539.1-201ENST00000515343 TBC1D2Q9BYX2 928 aa3.56□□□□□ -1.84
AC025539.1-201ENST00000515343 KIAA1468Q9P260 1216 aa3.56□□□□□ -1.84
AC025539.1-201ENST00000515343 ZMYND15Q9H091 742 aa3.56□□□□□ -1.84
AC025539.1-201ENST00000515343 MDM2Q00987 491 aaPredicted RBP3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 RSPH4AQ5TD94 716 aa3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 NYAP1Q6ZVC0 841 aa3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 RIC3Q7Z5B4 369 aa3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 SLF2Q8IX21 1173 aa3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 BEGAINQ9BUH8 593 aa3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 PRR14Q9BWN1 585 aa3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 PNMA3Q9UL41 463 aa3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 ERBB3P21860 1342 aa3.55□□□□□ -1.84
AC025539.1-201ENST00000515343 ACTN4O43707 911 aaKnown RBP3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 CLK2P49760 499 aaKnown RBP3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 IL27Q8NEV9 243 aa3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 HS3ST6Q96QI5 342 aa3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 LSM11P83369 360 aaKnown RBP eCLIP3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 HOXA2O43364 376 aa3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 MCM6Q14566 821 aa3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 VARS2Q5ST30 1063 aaKnown RBP3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 KCNH8Q96L42 1107 aa3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 KCNK17Q96T54 332 aa3.54□□□□□ -1.84
AC025539.1-201ENST00000515343 SLC10A3P09131 477 aa3.53□□□□□ -1.84
AC025539.1-201ENST00000515343 FBXO31Q5XUX0 539 aaPredicted RBP3.53□□□□□ -1.84
AC025539.1-201ENST00000515343 ADGRD1Q6QNK2 874 aa3.53□□□□□ -1.84
AC025539.1-201ENST00000515343 ARXQ96QS3 562 aa3.53□□□□□ -1.84
AC025539.1-201ENST00000515343 TTLL12Q14166 644 aaPredicted RBP3.53□□□□□ -1.85
AC025539.1-201ENST00000515343 IFFO2Q5TF58 517 aa3.53□□□□□ -1.85
AC025539.1-201ENST00000515343 SOWAHBA6NEL2 793 aa3.52□□□□□ -1.85
AC025539.1-201ENST00000515343 EMP3P54852 163 aa3.52□□□□□ -1.85
AC025539.1-201ENST00000515343 ZC3H4Q9UPT8 1303 aaKnown RBP3.52□□□□□ -1.85
AC025539.1-201ENST00000515343 RFC5P40937 340 aa3.52□□□□□ -1.85
AC025539.1-201ENST00000515343 PROX2Q3B8N5 592 aa3.52□□□□□ -1.85
AC025539.1-201ENST00000515343 MSS51Q4VC12 460 aa3.52□□□□□ -1.85
AC025539.1-201ENST00000515343 THAP11Q96EK4 314 aa3.52□□□□□ -1.85
AC025539.1-201ENST00000515343 NBPF3Q9H094 633 aa3.52□□□□□ -1.85
AC025539.1-201ENST00000515343 KDM4AO75164 1064 aa3.51□□□□□ -1.85
AC025539.1-201ENST00000515343 PSEN2P49810 448 aa3.51□□□□□ -1.85
AC025539.1-201ENST00000515343 KRTAP3-3Q9BYR6 98 aa3.51□□□□□ -1.85
AC025539.1-201ENST00000515343 KRTAP3-2Q9BYR7 98 aa3.51□□□□□ -1.85
AC025539.1-201ENST00000515343 LIMD1Q9UGP4 676 aa3.51□□□□□ -1.85
AC025539.1-201ENST00000515343 GJD4Q96KN9 370 aaPredicted RBP3.51□□□□□ -1.85
AC025539.1-201ENST00000515343 APBB1O00213 710 aa3.51□□□□□ -1.85
AC025539.1-201ENST00000515343 MORN1Q5T089 497 aa3.51□□□□□ -1.85
AC025539.1-201ENST00000515343 GRIPAP1Q4V328 841 aa3.5□□□□□ -1.85
AC025539.1-201ENST00000515343 SWT1Q5T5J6 900 aaKnown RBP3.5□□□□□ -1.85
AC025539.1-201ENST00000515343 TRAK2O60296 914 aa3.5□□□□□ -1.85
AC025539.1-201ENST00000515343 ZBTB3Q9H5J0 574 aa3.5□□□□□ -1.85
AC025539.1-201ENST00000515343 GPR37L1O60883 481 aa3.5□□□□□ -1.85
AC025539.1-201ENST00000515343 MCCD1P59942 119 aaPredicted RBP3.5□□□□□ -1.85
AC025539.1-201ENST00000515343 Q3C1V9 767 aa3.5□□□□□ -1.85
AC025539.1-201ENST00000515343 MYT1LQ9UL68 1186 aa3.5□□□□□ -1.85
AC025539.1-201ENST00000515343 ATP6V1AP38606 617 aa3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 ZFRQ96KR1 1074 aaKnown RBP3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 TSR3Q9UJK0 312 aaKnown RBP3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 SLC4A3P48751 1232 aa3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 MMP16P51512 607 aa3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 FAM161AQ3B820 660 aa3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 PROCA1Q8NCQ7 364 aaPredicted RBP3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 PCDHGC3Q9UN70 934 aa3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 BRICD5Q6PL45 260 aa3.49□□□□□ -1.85
AC025539.1-201ENST00000515343 C14orf37Q86TY3 774 aa3.48□□□□□ -1.85
AC025539.1-201ENST00000515343 MOXD2PA6NHM9 499 aa3.48□□□□□ -1.85
AC025539.1-201ENST00000515343 F12P00748 615 aaPredicted RBP3.48□□□□□ -1.85
AC025539.1-201ENST00000515343 HRCP23327 699 aa3.48□□□□□ -1.85
AC025539.1-201ENST00000515343 KMT5BQ4FZB7 885 aa3.48□□□□□ -1.85
AC025539.1-201ENST00000515343 LYPD8Q6UX82 237 aa3.48□□□□□ -1.85
AC025539.1-201ENST00000515343 GPKOWQ92917 476 aaPredicted RBP eCLIP3.48□□□□□ -1.85
AC025539.1-201ENST00000515343 GPSM3Q9Y4H4 160 aa3.48□□□□□ -1.85
AC025539.1-201ENST00000515343 NUTM1Q86Y26 1132 aa3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 MTMR14Q8NCE2 650 aa3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 COG6Q9Y2V7 657 aa3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 MTMR2Q13614 643 aa3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 SAMD7Q7Z3H4 446 aa3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 RETREG3Q86VR2 466 aa3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 CCDC125Q86Z20 511 aa3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 HDGFP51858 240 aaKnown RBP3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 RTL5Q5HYW3 569 aaPredicted RBP3.47□□□□□ -1.85
AC025539.1-201ENST00000515343 ITGBL1O95965 494 aaPredicted RBP3.46□□□□□ -1.86
AC025539.1-201ENST00000515343 SOX11P35716 441 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms