RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 MYO5BQ9ULV0 1848 aa17.03■□□□□ 0.32
NEDD9-215ENST00000514660 STAG3Q9UJ98 1225 aa17.03■□□□□ 0.32
NEDD9-215ENST00000514660 AFF2P51816 1311 aa17.02■□□□□ 0.32
NEDD9-215ENST00000514660 ADGRB3O60242 1522 aa17.02■□□□□ 0.32
NEDD9-215ENST00000514660 NUTM2BA6NNL0 878 aaPredicted RBP17.02■□□□□ 0.32
NEDD9-215ENST00000514660 NUTM2EB1AL46 878 aaPredicted RBP17.02■□□□□ 0.32
NEDD9-215ENST00000514660 NUTM2AQ8IVF1 878 aaPredicted RBP17.02■□□□□ 0.32
NEDD9-215ENST00000514660 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.02■□□□□ 0.32
NEDD9-215ENST00000514660 NOS1P29475 1434 aa17.02■□□□□ 0.31
NEDD9-215ENST00000514660 ZFYVE9O95405 1425 aa17■□□□□ 0.31
NEDD9-215ENST00000514660 SETBP1Q9Y6X0 1596 aa17■□□□□ 0.31
NEDD9-215ENST00000514660 KIF15Q9NS87 1388 aa16.99■□□□□ 0.31
NEDD9-215ENST00000514660 RRP7BPQ9NSQ0 103 aa16.98■□□□□ 0.31
NEDD9-215ENST00000514660 LMTK2Q8IWU2 1503 aa16.97■□□□□ 0.31
NEDD9-215ENST00000514660 BRINP3Q76B58 766 aa16.97■□□□□ 0.31
NEDD9-215ENST00000514660 ERBINQ96RT1 1412 aa16.96■□□□□ 0.31
NEDD9-215ENST00000514660 PLEKHG1Q9ULL1 1385 aa16.96■□□□□ 0.31
NEDD9-215ENST00000514660 ABCC5O15440 1437 aa16.96■□□□□ 0.3
NEDD9-215ENST00000514660 BCANQ96GW7 911 aa16.95■□□□□ 0.3
NEDD9-215ENST00000514660 ADAMTS13Q76LX8 1427 aa16.95■□□□□ 0.3
NEDD9-215ENST00000514660 NCOA3Q9Y6Q9 1424 aa16.95■□□□□ 0.3
NEDD9-215ENST00000514660 CROCC2H7BZ55 1655 aa16.94■□□□□ 0.3
NEDD9-215ENST00000514660 KANK4Q5T7N3 995 aaPredicted RBP16.94■□□□□ 0.3
NEDD9-215ENST00000514660 QTRT2Q9H974 415 aaKnown RBP16.93■□□□□ 0.3
NEDD9-215ENST00000514660 GCC2Q8IWJ2 1684 aa16.92■□□□□ 0.3
NEDD9-215ENST00000514660 RBM6P78332 1123 aaKnown RBP16.92■□□□□ 0.3
NEDD9-215ENST00000514660 C19orf44Q9H6X5 657 aa16.92■□□□□ 0.3
NEDD9-215ENST00000514660 TBX22Q9Y458 520 aa16.92■□□□□ 0.3
NEDD9-215ENST00000514660 SETD5Q9C0A6 1442 aa16.92■□□□□ 0.3
NEDD9-215ENST00000514660 RIMS2Q9UQ26 1411 aa16.92■□□□□ 0.3
NEDD9-215ENST00000514660 NHSL1Q5SYE7 1610 aa16.92■□□□□ 0.3
NEDD9-215ENST00000514660 ASXL1Q8IXJ9 1541 aa16.91■□□□□ 0.3
NEDD9-215ENST00000514660 MYOM3Q5VTT5 1437 aa16.91■□□□□ 0.3
NEDD9-215ENST00000514660 PTPRUQ92729 1446 aa16.91■□□□□ 0.3
NEDD9-215ENST00000514660 NUTM2DQ5VT03 806 aaPredicted RBP16.91■□□□□ 0.3
NEDD9-215ENST00000514660 CADPS2Q86UW7 1296 aa16.91■□□□□ 0.3
NEDD9-215ENST00000514660 DDX17Q92841 729 aaKnown RBP16.91■□□□□ 0.3
NEDD9-215ENST00000514660 TMEM131LA2VDJ0 1609 aa16.91■□□□□ 0.3
NEDD9-215ENST00000514660 C14orf37Q86TY3 774 aa16.9■□□□□ 0.3
NEDD9-215ENST00000514660 C8orf37Q96NL8 207 aa16.9■□□□□ 0.3
NEDD9-215ENST00000514660 PNPLA6Q8IY17 1366 aa16.88■□□□□ 0.29
NEDD9-215ENST00000514660 ATF3P18847 181 aa16.87■□□□□ 0.29
NEDD9-215ENST00000514660 SLC52A1Q9NWF4 448 aa16.87■□□□□ 0.29
NEDD9-215ENST00000514660 KANK1Q14678 1352 aa16.87■□□□□ 0.29
NEDD9-215ENST00000514660 MST1RQ04912 1400 aa16.87■□□□□ 0.29
NEDD9-215ENST00000514660 ZRANB1Q9UGI0 708 aa16.84■□□□□ 0.29
NEDD9-215ENST00000514660 DAPK1P53355 1430 aa16.84■□□□□ 0.29
NEDD9-215ENST00000514660 PPP1R15AO75807 674 aaPredicted RBP16.83■□□□□ 0.28
NEDD9-215ENST00000514660 ATAD2Q6PL18 1390 aa16.83■□□□□ 0.28
NEDD9-215ENST00000514660 CHIC2Q9UKJ5 165 aa16.82■□□□□ 0.28
NEDD9-215ENST00000514660 AMOTL2Q9Y2J4 779 aa16.82■□□□□ 0.28
NEDD9-215ENST00000514660 PTPN23Q9H3S7 1636 aa16.81■□□□□ 0.28
NEDD9-215ENST00000514660 ADAMTS2O95450 1211 aa16.81■□□□□ 0.28
NEDD9-215ENST00000514660 XRN1Q8IZH2 1706 aaKnown RBP16.81■□□□□ 0.28
NEDD9-215ENST00000514660 TRPM2O94759 1503 aa16.8■□□□□ 0.28
NEDD9-215ENST00000514660 PIK3R4Q99570 1358 aa16.8■□□□□ 0.28
NEDD9-215ENST00000514660 EP400Q96L91 3159 aa16.8■□□□□ 0.28
NEDD9-215ENST00000514660 LRRC59Q96AG4 307 aaKnown RBP16.8■□□□□ 0.28
NEDD9-215ENST00000514660 DCCP43146 1447 aa16.79■□□□□ 0.28
NEDD9-215ENST00000514660 NRXN3Q9Y4C0 1643 aa16.79■□□□□ 0.28
NEDD9-215ENST00000514660 NGLY1Q96IV0 654 aa16.79■□□□□ 0.28
NEDD9-215ENST00000514660 UNC13BO14795 1591 aa16.78■□□□□ 0.28
NEDD9-215ENST00000514660 RPRD2Q5VT52 1461 aaKnown RBP16.78■□□□□ 0.28
NEDD9-215ENST00000514660 ATRNO75882 1429 aa16.77■□□□□ 0.27
NEDD9-215ENST00000514660 USP21Q9UK80 565 aa16.75■□□□□ 0.27
NEDD9-215ENST00000514660 VPS8Q8N3P4 1428 aa16.75■□□□□ 0.27
NEDD9-215ENST00000514660 NALCNQ8IZF0 1738 aa16.75■□□□□ 0.27
NEDD9-215ENST00000514660 CHGAP10645 457 aaKnown RBP16.74■□□□□ 0.27
NEDD9-215ENST00000514660 FNBP4Q8N3X1 1017 aaPredicted RBP16.74■□□□□ 0.27
NEDD9-215ENST00000514660 ANKRD30AQ9BXX3 1397 aa16.74■□□□□ 0.27
NEDD9-215ENST00000514660 LAMC1P11047 1609 aa16.74■□□□□ 0.27
NEDD9-215ENST00000514660 E9PCH4 1651 aa16.73■□□□□ 0.27
NEDD9-215ENST00000514660 HDGFP51858 240 aaKnown RBP16.73■□□□□ 0.27
NEDD9-215ENST00000514660 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.73■□□□□ 0.27
NEDD9-215ENST00000514660 TRPC5Q9UL62 973 aaPredicted RBP16.72■□□□□ 0.27
NEDD9-215ENST00000514660 METP08581 1390 aa16.72■□□□□ 0.27
NEDD9-215ENST00000514660 BCL9LQ86UU0 1499 aa16.71■□□□□ 0.27
NEDD9-215ENST00000514660 DEFB132Q7Z7B7 95 aa16.7■□□□□ 0.26
NEDD9-215ENST00000514660 LRP5O75197 1615 aa16.7■□□□□ 0.26
NEDD9-215ENST00000514660 ADGRL3Q9HAR2 1447 aa16.7■□□□□ 0.26
NEDD9-215ENST00000514660 SOS2Q07890 1332 aaPredicted RBP16.7■□□□□ 0.26
NEDD9-215ENST00000514660 ADGRL2O95490 1459 aa16.69■□□□□ 0.26
NEDD9-215ENST00000514660 C1orf167Q5SNV9 1468 aa16.69■□□□□ 0.26
NEDD9-215ENST00000514660 ORAI2Q96SN7 254 aa16.68■□□□□ 0.26
NEDD9-215ENST00000514660 BRWD3Q6RI45 1802 aa16.67■□□□□ 0.26
NEDD9-215ENST00000514660 COL22A1Q8NFW1 1626 aaPredicted RBP16.67■□□□□ 0.26
NEDD9-215ENST00000514660 PTCH1Q13635 1447 aa16.66■□□□□ 0.26
NEDD9-215ENST00000514660 CCDC125Q86Z20 511 aa16.66■□□□□ 0.26
NEDD9-215ENST00000514660 ANKRD50Q9ULJ7 1429 aa16.66■□□□□ 0.26
NEDD9-215ENST00000514660 GLI3P10071 1580 aa16.65■□□□□ 0.26
NEDD9-215ENST00000514660 MYOM2P54296 1465 aa16.65■□□□□ 0.26
NEDD9-215ENST00000514660 MARF1Q9Y4F3 1742 aaKnown RBP16.64■□□□□ 0.25
NEDD9-215ENST00000514660 BLMP54132 1417 aaPredicted RBP16.62■□□□□ 0.25
NEDD9-215ENST00000514660 FOXD1Q16676 465 aa16.62■□□□□ 0.25
NEDD9-215ENST00000514660 GJD4Q96KN9 370 aaPredicted RBP16.62■□□□□ 0.25
NEDD9-215ENST00000514660 PSDA5PKW4 1024 aaPredicted RBP16.59■□□□□ 0.25
NEDD9-215ENST00000514660 RALGAPBQ86X10 1494 aa16.58■□□□□ 0.24
NEDD9-215ENST00000514660 IQGAP3Q86VI3 1631 aa16.58■□□□□ 0.24
NEDD9-215ENST00000514660 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.58■□□□□ 0.24
NEDD9-215ENST00000514660 ROBO2Q9HCK4 1378 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms