RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 DIP2AQ14689 1571 aa12.87□□□□□ -0.35
CLDND1-229ENST00000513988 CSRNP3Q8WYN3 585 aa12.87□□□□□ -0.35
CLDND1-229ENST00000513988 HRCP23327 699 aa12.86□□□□□ -0.35
CLDND1-229ENST00000513988 ERVK-7P63135 1459 aa12.85□□□□□ -0.35
CLDND1-229ENST00000513988 PSDA5PKW4 1024 aaPredicted RBP12.85□□□□□ -0.35
CLDND1-229ENST00000513988 SLC26A8Q96RN1 970 aa12.85□□□□□ -0.35
CLDND1-229ENST00000513988 SLC4A1APQ9BWU0 796 aaKnown RBP12.85□□□□□ -0.35
CLDND1-229ENST00000513988 BLMP54132 1417 aaPredicted RBP12.85□□□□□ -0.35
CLDND1-229ENST00000513988 DEFB132Q7Z7B7 95 aa12.84□□□□□ -0.35
CLDND1-229ENST00000513988 LRRIQ1Q96JM4 1722 aa12.84□□□□□ -0.35
CLDND1-229ENST00000513988 DSG3P32926 999 aa12.83□□□□□ -0.36
CLDND1-229ENST00000513988 TRPC5Q9UL62 973 aaPredicted RBP12.83□□□□□ -0.36
CLDND1-229ENST00000513988 RTEL1-TNFRSF6BF6WH68 1400 aa12.82□□□□□ -0.36
CLDND1-229ENST00000513988 SF3B2Q13435 895 aaKnown RBP12.82□□□□□ -0.36
CLDND1-229ENST00000513988 C14orf37Q86TY3 774 aa12.82□□□□□ -0.36
CLDND1-229ENST00000513988 GPATCH8Q9UKJ3 1502 aaKnown RBP12.82□□□□□ -0.36
CLDND1-229ENST00000513988 CFDP1Q9UEE9 299 aaPredicted RBP12.81□□□□□ -0.36
CLDND1-229ENST00000513988 USP21Q9UK80 565 aa12.81□□□□□ -0.36
CLDND1-229ENST00000513988 ADAMTS2O95450 1211 aa12.8□□□□□ -0.36
CLDND1-229ENST00000513988 CADPS2Q86UW7 1296 aa12.8□□□□□ -0.36
CLDND1-229ENST00000513988 TMEM2Q9UHN6 1383 aa12.8□□□□□ -0.36
CLDND1-229ENST00000513988 SETD5Q9C0A6 1442 aa12.79□□□□□ -0.36
CLDND1-229ENST00000513988 ATF3P18847 181 aa12.79□□□□□ -0.36
CLDND1-229ENST00000513988 BCL9LQ86UU0 1499 aa12.78□□□□□ -0.36
CLDND1-229ENST00000513988 BRINP3Q76B58 766 aa12.78□□□□□ -0.36
CLDND1-229ENST00000513988 LRRC59Q96AG4 307 aaKnown RBP12.78□□□□□ -0.36
CLDND1-229ENST00000513988 CFAP65Q6ZU64 1925 aaKnown RBP12.78□□□□□ -0.36
CLDND1-229ENST00000513988 TET3O43151 1660 aa12.77□□□□□ -0.36
CLDND1-229ENST00000513988 CCDC18Q5T9S5 1454 aa12.77□□□□□ -0.37
CLDND1-229ENST00000513988 MAST1Q9Y2H9 1570 aa12.77□□□□□ -0.37
CLDND1-229ENST00000513988 BCANQ96GW7 911 aa12.76□□□□□ -0.37
CLDND1-229ENST00000513988 STAG3Q9UJ98 1225 aa12.76□□□□□ -0.37
CLDND1-229ENST00000513988 ATRNO75882 1429 aa12.76□□□□□ -0.37
CLDND1-229ENST00000513988 NCOA3Q9Y6Q9 1424 aa12.76□□□□□ -0.37
CLDND1-229ENST00000513988 PNPLA6Q8IY17 1366 aa12.75□□□□□ -0.37
CLDND1-229ENST00000513988 C19orf44Q9H6X5 657 aa12.74□□□□□ -0.37
CLDND1-229ENST00000513988 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.74□□□□□ -0.37
CLDND1-229ENST00000513988 CAMSAP2Q08AD1 1489 aa12.73□□□□□ -0.37
CLDND1-229ENST00000513988 C1QTNF8P60827 252 aa12.73□□□□□ -0.37
CLDND1-229ENST00000513988 MROH1Q8NDA8 1641 aa12.73□□□□□ -0.37
CLDND1-229ENST00000513988 CCNB3Q8WWL7 1395 aa12.72□□□□□ -0.37
CLDND1-229ENST00000513988 EHMT2Q96KQ7 1210 aa12.72□□□□□ -0.37
CLDND1-229ENST00000513988 PIK3C2BO00750 1634 aa12.72□□□□□ -0.37
CLDND1-229ENST00000513988 ASXL1Q8IXJ9 1541 aa12.72□□□□□ -0.37
CLDND1-229ENST00000513988 ARHGAP35Q9NRY4 1499 aa12.72□□□□□ -0.37
CLDND1-229ENST00000513988 MBD5Q9P267 1494 aa12.72□□□□□ -0.37
CLDND1-229ENST00000513988 CEP350Q5VT06 3117 aa12.71□□□□□ -0.37
CLDND1-229ENST00000513988 ABCB7O75027 752 aa12.71□□□□□ -0.37
CLDND1-229ENST00000513988 FNBP4Q8N3X1 1017 aaPredicted RBP12.71□□□□□ -0.37
CLDND1-229ENST00000513988 ZNF784Q8NCA9 323 aaPredicted RBP12.71□□□□□ -0.37
CLDND1-229ENST00000513988 ZNF644Q9H582 1327 aaPredicted RBP12.7□□□□□ -0.38
CLDND1-229ENST00000513988 UNC13BO14795 1591 aa12.7□□□□□ -0.38
CLDND1-229ENST00000513988 CHD2O14647 1828 aaKnown RBP12.7□□□□□ -0.38
CLDND1-229ENST00000513988 R3HDM1Q15032 1099 aaKnown RBP12.7□□□□□ -0.38
CLDND1-229ENST00000513988 EFCAB6Q5THR3 1501 aa12.7□□□□□ -0.38
CLDND1-229ENST00000513988 BAG6P46379 1132 aa12.68□□□□□ -0.38
CLDND1-229ENST00000513988 MYCNP04198 464 aaPredicted RBP12.67□□□□□ -0.38
CLDND1-229ENST00000513988 SAMD1Q6SPF0 538 aaPredicted RBP12.67□□□□□ -0.38
CLDND1-229ENST00000513988 CEP152O94986 1710 aa12.67□□□□□ -0.38
CLDND1-229ENST00000513988 PTCH1Q13635 1447 aa12.66□□□□□ -0.38
CLDND1-229ENST00000513988 GJD4Q96KN9 370 aaPredicted RBP12.66□□□□□ -0.38
CLDND1-229ENST00000513988 CCDC141Q6ZP82 1450 aa12.65□□□□□ -0.38
CLDND1-229ENST00000513988 CASKIN1Q8WXD9 1431 aa12.64□□□□□ -0.39
CLDND1-229ENST00000513988 APLP2Q06481 763 aa12.64□□□□□ -0.39
CLDND1-229ENST00000513988 DDX17Q92841 729 aaKnown RBP12.64□□□□□ -0.39
CLDND1-229ENST00000513988 ZNF219Q9P2Y4 722 aaPredicted RBP12.64□□□□□ -0.39
CLDND1-229ENST00000513988 SPHKAPQ2M3C7 1700 aa12.63□□□□□ -0.39
CLDND1-229ENST00000513988 FOXD4L1Q9NU39 408 aa12.62□□□□□ -0.39
CLDND1-229ENST00000513988 BRWD3Q6RI45 1802 aa12.62□□□□□ -0.39
CLDND1-229ENST00000513988 DCCP43146 1447 aa12.62□□□□□ -0.39
CLDND1-229ENST00000513988 EEA1Q15075 1411 aa12.62□□□□□ -0.39
CLDND1-229ENST00000513988 PPP1R15AO75807 674 aaPredicted RBP12.61□□□□□ -0.39
CLDND1-229ENST00000513988 PPP1R1BQ9UD71 204 aaPredicted RBP12.61□□□□□ -0.39
CLDND1-229ENST00000513988 ARHGAP31Q2M1Z3 1444 aa12.61□□□□□ -0.39
CLDND1-229ENST00000513988 MST1RQ04912 1400 aa12.6□□□□□ -0.39
CLDND1-229ENST00000513988 PLEKHG1Q9ULL1 1385 aa12.59□□□□□ -0.39
CLDND1-229ENST00000513988 ZBTB22O15209 634 aa12.59□□□□□ -0.39
CLDND1-229ENST00000513988 UBTFP17480 764 aaKnown RBP12.59□□□□□ -0.39
CLDND1-229ENST00000513988 IDI1Q13907 227 aa12.59□□□□□ -0.39
CLDND1-229ENST00000513988 EN1Q05925 392 aaPredicted RBP12.58□□□□□ -0.4
CLDND1-229ENST00000513988 TBX22Q9Y458 520 aa12.58□□□□□ -0.4
CLDND1-229ENST00000513988 EIF2AK4Q9P2K8 1649 aaKnown RBP12.58□□□□□ -0.4
CLDND1-229ENST00000513988 RALGAPBQ86X10 1494 aa12.58□□□□□ -0.4
CLDND1-229ENST00000513988 NINLQ9Y2I6 1382 aa12.57□□□□□ -0.4
CLDND1-229ENST00000513988 RSPH4AQ5TD94 716 aa12.57□□□□□ -0.4
CLDND1-229ENST00000513988 SEPT12Q8IYM1 358 aa12.57□□□□□ -0.4
CLDND1-229ENST00000513988 ADGRB3O60242 1522 aa12.57□□□□□ -0.4
CLDND1-229ENST00000513988 GLI3P10071 1580 aa12.56□□□□□ -0.4
CLDND1-229ENST00000513988 TSPY4P0CV99 314 aa12.55□□□□□ -0.4
CLDND1-229ENST00000513988 TSPY10P0CW01 314 aa12.55□□□□□ -0.4
CLDND1-229ENST00000513988 KRT27Q7Z3Y8 459 aa12.55□□□□□ -0.4
CLDND1-229ENST00000513988 CAMTA1Q9Y6Y1 1673 aa12.54□□□□□ -0.4
CLDND1-229ENST00000513988 FYCO1Q9BQS8 1478 aa12.54□□□□□ -0.4
CLDND1-229ENST00000513988 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.54□□□□□ -0.4
CLDND1-229ENST00000513988 HDGFP51858 240 aaKnown RBP12.53□□□□□ -0.4
CLDND1-229ENST00000513988 MTUS2Q5JR59 1369 aa12.53□□□□□ -0.4
CLDND1-229ENST00000513988 PIK3R4Q99570 1358 aa12.53□□□□□ -0.4
CLDND1-229ENST00000513988 GIGYF1O75420 1035 aaPredicted RBP12.52□□□□□ -0.41
CLDND1-229ENST00000513988 UNC5CLQ8IV45 518 aa12.52□□□□□ -0.41
CLDND1-229ENST00000513988 ATF5Q9Y2D1 282 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms