RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 PRKRIP1Q9H875 184 aaPredicted RBP20.67■□□□□ 0.9
VCAN-211ENST00000513984 SCAF11Q99590 1463 aaKnown RBP20.67■□□□□ 0.9
VCAN-211ENST00000513984 TESK2Q96S53 571 aa20.65■□□□□ 0.9
VCAN-211ENST00000513984 MYO5BQ9ULV0 1848 aa20.63■□□□□ 0.89
VCAN-211ENST00000513984 SETBP1Q9Y6X0 1596 aa20.63■□□□□ 0.89
VCAN-211ENST00000513984 POLR3GLQ9BT43 218 aa20.62■□□□□ 0.89
VCAN-211ENST00000513984 CLTCQ00610 1675 aaKnown RBP20.62■□□□□ 0.89
VCAN-211ENST00000513984 ADGRF5Q8IZF2 1346 aa20.62■□□□□ 0.89
VCAN-211ENST00000513984 PPP6R1Q9UPN7 881 aa20.62■□□□□ 0.89
VCAN-211ENST00000513984 RPGRIP1LQ68CZ1 1315 aa20.61■□□□□ 0.89
VCAN-211ENST00000513984 NEXMIFQ5QGS0 1516 aa20.6■□□□□ 0.89
VCAN-211ENST00000513984 DISP3Q9P2K9 1392 aa20.6■□□□□ 0.89
VCAN-211ENST00000513984 PIK3C2GO75747 1445 aa20.6■□□□□ 0.89
VCAN-211ENST00000513984 MYO3AQ8NEV4 1616 aa20.59■□□□□ 0.89
VCAN-211ENST00000513984 GTF3C3Q9Y5Q9 886 aa20.58■□□□□ 0.89
VCAN-211ENST00000513984 EIF3AQ14152 1382 aaKnown RBP20.58■□□□□ 0.89
VCAN-211ENST00000513984 TMEM131LA2VDJ0 1609 aa20.58■□□□□ 0.88
VCAN-211ENST00000513984 ERVK-7P63135 1459 aa20.57■□□□□ 0.88
VCAN-211ENST00000513984 CHGAP10645 457 aaKnown RBP20.57■□□□□ 0.88
VCAN-211ENST00000513984 TMF1P82094 1093 aa20.56■□□□□ 0.88
VCAN-211ENST00000513984 SLC52A1Q9NWF4 448 aa20.56■□□□□ 0.88
VCAN-211ENST00000513984 CFAP70Q5T0N1 1121 aa20.55■□□□□ 0.88
VCAN-211ENST00000513984 SPATA31D1Q6ZQQ2 1576 aa20.54■□□□□ 0.88
VCAN-211ENST00000513984 ADGRB1O14514 1584 aa20.53■□□□□ 0.88
VCAN-211ENST00000513984 IDI1Q13907 227 aa20.52■□□□□ 0.88
VCAN-211ENST00000513984 KDM5AP29375 1690 aaKnown RBP20.52■□□□□ 0.87
VCAN-211ENST00000513984 KTN1Q86UP2 1357 aaKnown RBP20.52■□□□□ 0.87
VCAN-211ENST00000513984 ZFYVE9O95405 1425 aa20.51■□□□□ 0.87
VCAN-211ENST00000513984 MYOM1P52179 1685 aa20.51■□□□□ 0.87
VCAN-211ENST00000513984 CCDC184Q52MB2 194 aa20.5■□□□□ 0.87
VCAN-211ENST00000513984 C14orf93Q9H972 538 aaKnown RBP20.49■□□□□ 0.87
VCAN-211ENST00000513984 MRS2Q9HD23 443 aa20.48■□□□□ 0.87
VCAN-211ENST00000513984 SBNO2Q9Y2G9 1366 aa20.47■□□□□ 0.87
VCAN-211ENST00000513984 QRICH2Q9H0J4 1663 aa20.46■□□□□ 0.87
VCAN-211ENST00000513984 VGFO15240 615 aaPredicted RBP20.46■□□□□ 0.87
VCAN-211ENST00000513984 CDCA8Q53HL2 280 aa20.46■□□□□ 0.87
VCAN-211ENST00000513984 SLC24A1O60721 1099 aa20.46■□□□□ 0.87
VCAN-211ENST00000513984 ARHGEF28Q8N1W1 1705 aaKnown RBP20.45■□□□□ 0.86
VCAN-211ENST00000513984 PER1O15534 1290 aaPredicted RBP20.45■□□□□ 0.86
VCAN-211ENST00000513984 FBXO31Q5XUX0 539 aaPredicted RBP20.45■□□□□ 0.86
VCAN-211ENST00000513984 RALBP1Q15311 655 aa20.43■□□□□ 0.86
VCAN-211ENST00000513984 PARD3Q8TEW0 1356 aa20.42■□□□□ 0.86
VCAN-211ENST00000513984 MLECQ14165 292 aa20.4■□□□□ 0.86
VCAN-211ENST00000513984 MYBBP1AQ9BQG0 1328 aaKnown RBP20.4■□□□□ 0.86
VCAN-211ENST00000513984 PANK3Q9H999 370 aa20.39■□□□□ 0.86
VCAN-211ENST00000513984 ASXL1Q8IXJ9 1541 aa20.39■□□□□ 0.85
VCAN-211ENST00000513984 CENPJQ9HC77 1338 aaPredicted RBP20.38■□□□□ 0.85
VCAN-211ENST00000513984 A2ML1A8K2U0 1454 aa20.38■□□□□ 0.85
VCAN-211ENST00000513984 BRD4O60885 1362 aaPredicted RBP20.38■□□□□ 0.85
VCAN-211ENST00000513984 HNRNPUQ00839 825 aaKnown RBP eCLIP20.38■□□□□ 0.85
VCAN-211ENST00000513984 ZMYM3Q14202 1370 aa20.37■□□□□ 0.85
VCAN-211ENST00000513984 CNGB1Q14028 1251 aaPredicted RBP20.36■□□□□ 0.85
VCAN-211ENST00000513984 FAM9BQ8IZU0 186 aa20.36■□□□□ 0.85
VCAN-211ENST00000513984 NUTM2DQ5VT03 806 aaPredicted RBP20.35■□□□□ 0.85
VCAN-211ENST00000513984 TMEM132EQ6IEE7 984 aa20.34■□□□□ 0.85
VCAN-211ENST00000513984 ESF1Q9H501 851 aaKnown RBP20.34■□□□□ 0.85
VCAN-211ENST00000513984 TRAK1Q9UPV9 953 aa20.34■□□□□ 0.85
VCAN-211ENST00000513984 SETD1AO15047 1707 aaKnown RBP20.34■□□□□ 0.85
VCAN-211ENST00000513984 ALKQ9UM73 1620 aa20.33■□□□□ 0.85
VCAN-211ENST00000513984 NLRP13Q86W25 1043 aa20.3■□□□□ 0.84
VCAN-211ENST00000513984 TMC1Q8TDI8 760 aa20.3■□□□□ 0.84
VCAN-211ENST00000513984 STAG3Q9UJ98 1225 aa20.3■□□□□ 0.84
VCAN-211ENST00000513984 PNISRQ8TF01 805 aaKnown RBP20.3■□□□□ 0.84
VCAN-211ENST00000513984 UBR1Q8IWV7 1749 aa20.29■□□□□ 0.84
VCAN-211ENST00000513984 RIMS2Q9UQ26 1411 aa20.29■□□□□ 0.84
VCAN-211ENST00000513984 NPC1L1Q9UHC9 1359 aa20.29■□□□□ 0.84
VCAN-211ENST00000513984 FER1L4A9Z1Z3 1794 aa20.28■□□□□ 0.84
VCAN-211ENST00000513984 LRPPRCP42704 1394 aaKnown RBP20.28■□□□□ 0.84
VCAN-211ENST00000513984 ZBED9Q6R2W3 1325 aa20.28■□□□□ 0.84
VCAN-211ENST00000513984 KNSTRNQ9Y448 316 aa20.27■□□□□ 0.84
VCAN-211ENST00000513984 TULP4Q9NRJ4 1543 aa20.27■□□□□ 0.84
VCAN-211ENST00000513984 TNRQ92752 1358 aa20.27■□□□□ 0.84
VCAN-211ENST00000513984 CC2D1BQ5T0F9 858 aaKnown RBP20.27■□□□□ 0.84
VCAN-211ENST00000513984 PTPRMP28827 1452 aa20.27■□□□□ 0.83
VCAN-211ENST00000513984 NRXN3Q9Y4C0 1643 aa20.27■□□□□ 0.83
VCAN-211ENST00000513984 C3P01024 1663 aa20.26■□□□□ 0.83
VCAN-211ENST00000513984 AMER1Q5JTC6 1135 aaPredicted RBP20.26■□□□□ 0.83
VCAN-211ENST00000513984 YTHDC2Q9H6S0 1430 aaKnown RBP20.25■□□□□ 0.83
VCAN-211ENST00000513984 TRHP20396 242 aaPredicted RBP20.24■□□□□ 0.83
VCAN-211ENST00000513984 PUS7Q96PZ0 661 aaKnown RBP20.24■□□□□ 0.83
VCAN-211ENST00000513984 USP32Q8NFA0 1604 aa20.23■□□□□ 0.83
VCAN-211ENST00000513984 DLC1Q96QB1 1528 aa20.22■□□□□ 0.83
VCAN-211ENST00000513984 EVC2Q86UK5 1308 aa20.2■□□□□ 0.82
VCAN-211ENST00000513984 NLRP1Q9C000 1473 aa20.2■□□□□ 0.82
VCAN-211ENST00000513984 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.2■□□□□ 0.82
VCAN-211ENST00000513984 KNDC1Q76NI1 1749 aa20.19■□□□□ 0.82
VCAN-211ENST00000513984 INSRP06213 1382 aa20.19■□□□□ 0.82
VCAN-211ENST00000513984 CARD14Q9BXL6 1004 aa20.16■□□□□ 0.82
VCAN-211ENST00000513984 STK26Q9P289 416 aa20.16■□□□□ 0.82
VCAN-211ENST00000513984 SUPT16HQ9Y5B9 1047 aaKnown RBP20.16■□□□□ 0.82
VCAN-211ENST00000513984 TMEM2Q9UHN6 1383 aa20.15■□□□□ 0.82
VCAN-211ENST00000513984 PPP2R1AP30153 589 aa20.14■□□□□ 0.81
VCAN-211ENST00000513984 HDGFP51858 240 aaKnown RBP20.13■□□□□ 0.81
VCAN-211ENST00000513984 SENP3Q9H4L4 574 aaPredicted RBP20.13■□□□□ 0.81
VCAN-211ENST00000513984 NINLQ9Y2I6 1382 aa20.13■□□□□ 0.81
VCAN-211ENST00000513984 NSD3Q9BZ95 1437 aa20.12■□□□□ 0.81
VCAN-211ENST00000513984 ABCC11Q96J66 1382 aa20.12■□□□□ 0.81
VCAN-211ENST00000513984 PRAM1Q96QH2 718 aa20.12■□□□□ 0.81
VCAN-211ENST00000513984 BLMP54132 1417 aaPredicted RBP20.12■□□□□ 0.81
VCAN-211ENST00000513984 SLC12A5Q9H2X9 1139 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms