RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 EVC2Q86UK5 1308 aa10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 AAMPQ13685 434 aa10.54□□□□□ -0.72
LIMCH1-216ENST00000512820 C14orf37Q86TY3 774 aa10.54□□□□□ -0.72
LIMCH1-216ENST00000512820 TCP11L2Q8N4U5 519 aa10.54□□□□□ -0.72
LIMCH1-216ENST00000512820 DDX19BQ9UMR2 479 aa10.54□□□□□ -0.72
LIMCH1-216ENST00000512820 ARHGAP5Q13017 1502 aa10.54□□□□□ -0.72
LIMCH1-216ENST00000512820 AFAP1Q8N556 730 aa10.53□□□□□ -0.72
LIMCH1-216ENST00000512820 TCOF1Q13428 1488 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-216ENST00000512820 SLFN5Q08AF3 891 aa10.53□□□□□ -0.72
LIMCH1-216ENST00000512820 ANKRD45Q5TZF3 282 aa10.53□□□□□ -0.72
LIMCH1-216ENST00000512820 CHMP5Q9NZZ3 219 aa10.53□□□□□ -0.72
LIMCH1-216ENST00000512820 PLB1Q6P1J6 1458 aa10.53□□□□□ -0.72
LIMCH1-216ENST00000512820 SOX12O15370 315 aa10.53□□□□□ -0.72
LIMCH1-216ENST00000512820 LAMC3Q9Y6N6 1575 aa10.52□□□□□ -0.72
LIMCH1-216ENST00000512820 ZBTB7CA1YPR0 619 aa10.52□□□□□ -0.72
LIMCH1-216ENST00000512820 DNAJC5BQ9UF47 199 aa10.52□□□□□ -0.72
LIMCH1-216ENST00000512820 ELL2O00472 640 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-216ENST00000512820 MTHFSP49914 203 aa10.52□□□□□ -0.73
LIMCH1-216ENST00000512820 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.52□□□□□ -0.73
LIMCH1-216ENST00000512820 C22orf23Q9BZE7 217 aa10.52□□□□□ -0.73
LIMCH1-216ENST00000512820 VGFO15240 615 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-216ENST00000512820 MCCP23508 829 aa10.51□□□□□ -0.73
LIMCH1-216ENST00000512820 PDZRN3Q9UPQ7 1066 aa10.51□□□□□ -0.73
LIMCH1-216ENST00000512820 PLCB2Q00722 1185 aa10.51□□□□□ -0.73
LIMCH1-216ENST00000512820 ARHGEF11O15085 1522 aa10.51□□□□□ -0.73
LIMCH1-216ENST00000512820 RIPK4P57078 832 aa10.5□□□□□ -0.73
LIMCH1-216ENST00000512820 ANO8Q9HCE9 1232 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-216ENST00000512820 DHX29Q7Z478 1369 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-216ENST00000512820 PLEKHG5O94827 1062 aa10.5□□□□□ -0.73
LIMCH1-216ENST00000512820 TMEM132EQ6IEE7 984 aa10.49□□□□□ -0.73
LIMCH1-216ENST00000512820 MAGI1Q96QZ7 1491 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-216ENST00000512820 MLECQ14165 292 aa10.49□□□□□ -0.73
LIMCH1-216ENST00000512820 RTF1Q92541 710 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-216ENST00000512820 DIAPH1O60610 1272 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-216ENST00000512820 DUSP27Q5VZP5 1158 aa10.48□□□□□ -0.73
LIMCH1-216ENST00000512820 LNPKQ9C0E8 428 aa10.48□□□□□ -0.73
LIMCH1-216ENST00000512820 GPATCH8Q9UKJ3 1502 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-216ENST00000512820 MINK1Q8N4C8 1332 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-216ENST00000512820 LMOD3Q0VAK6 560 aa10.48□□□□□ -0.73
LIMCH1-216ENST00000512820 SLC12A5Q9H2X9 1139 aa10.48□□□□□ -0.73
LIMCH1-216ENST00000512820 CCDC141Q6ZP82 1450 aa10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 RALGAPBQ86X10 1494 aa10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 OS9Q13438 667 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 SKOR2Q2VWA4 1001 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 DISP3Q9P2K9 1392 aa10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 PLEKHH2Q8IVE3 1493 aa10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 CTTNBP2Q8WZ74 1663 aa10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 GGNBP2Q9H3C7 697 aa10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 DDX49Q9Y6V7 483 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-216ENST00000512820 WWC1Q8IX03 1113 aa10.46□□□□□ -0.73
LIMCH1-216ENST00000512820 KIF16BQ96L93 1317 aa10.46□□□□□ -0.73
LIMCH1-216ENST00000512820 SCAPERQ9BY12 1400 aa10.46□□□□□ -0.74
LIMCH1-216ENST00000512820 CABP2Q9NPB3 220 aa10.46□□□□□ -0.74
LIMCH1-216ENST00000512820 NINLQ9Y2I6 1382 aa10.46□□□□□ -0.74
LIMCH1-216ENST00000512820 GRIN2AQ12879 1464 aa10.45□□□□□ -0.74
LIMCH1-216ENST00000512820 HMMRO75330 724 aa10.45□□□□□ -0.74
LIMCH1-216ENST00000512820 HDGFP51858 240 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-216ENST00000512820 EXOSC9Q06265 439 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-216ENST00000512820 ST18O60284 1047 aa10.45□□□□□ -0.74
LIMCH1-216ENST00000512820 WDR63Q8IWG1 891 aa10.45□□□□□ -0.74
LIMCH1-216ENST00000512820 SLC4A10Q6U841 1118 aa10.45□□□□□ -0.74
LIMCH1-216ENST00000512820 PARD3Q8TEW0 1356 aa10.45□□□□□ -0.74
LIMCH1-216ENST00000512820 KCNJ4P48050 445 aa10.44□□□□□ -0.74
LIMCH1-216ENST00000512820 TSR2Q969E8 191 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-216ENST00000512820 NUP153P49790 1475 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-216ENST00000512820 TRAK2O60296 914 aa10.44□□□□□ -0.74
LIMCH1-216ENST00000512820 RNF123Q5XPI4 1314 aa10.44□□□□□ -0.74
LIMCH1-216ENST00000512820 TEX14Q8IWB6 1497 aa10.43□□□□□ -0.74
LIMCH1-216ENST00000512820 ZNF608Q9ULD9 1512 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-216ENST00000512820 FOXD4L5Q5VV16 416 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-216ENST00000512820 FOXD4L4Q8WXT5 416 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-216ENST00000512820 STK31Q9BXU1 1019 aa10.43□□□□□ -0.74
LIMCH1-216ENST00000512820 TRIM6-TRIM34B2RNG4 842 aa10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 MVPQ14764 893 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 NOL8Q76FK4 1167 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 MRE11P49959 708 aa10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 HSP90AA2PQ14568 343 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 FAM43AQ8N2R8 423 aa10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 NKTRP30414 1462 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 API5Q9BZZ5 524 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 SYAP1Q96A49 352 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 LRPPRCP42704 1394 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 PZPP20742 1482 aa10.42□□□□□ -0.74
LIMCH1-216ENST00000512820 KIAA1211Q6ZU35 1233 aa10.41□□□□□ -0.74
LIMCH1-216ENST00000512820 KIF14Q15058 1648 aa10.41□□□□□ -0.74
LIMCH1-216ENST00000512820 NOB1Q9ULX3 412 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-216ENST00000512820 HMOX1P09601 288 aa10.41□□□□□ -0.74
LIMCH1-216ENST00000512820 RARSP54136 660 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-216ENST00000512820 GOLGA6L4A6NEF3 574 aa10.4□□□□□ -0.74
LIMCH1-216ENST00000512820 COG3Q96JB2 828 aa10.4□□□□□ -0.74
LIMCH1-216ENST00000512820 WDR62O43379 1518 aa10.4□□□□□ -0.74
LIMCH1-216ENST00000512820 PER1O15534 1290 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-216ENST00000512820 GNAI1P63096 354 aa10.4□□□□□ -0.74
LIMCH1-216ENST00000512820 SPATA31E1Q6ZUB1 1445 aa10.4□□□□□ -0.75
LIMCH1-216ENST00000512820 IGHDP01880 384 aa10.4□□□□□ -0.75
LIMCH1-216ENST00000512820 PRAG1Q86YV5 1406 aa10.39□□□□□ -0.75
LIMCH1-216ENST00000512820 KIAA2012Q0VF49 1180 aa10.39□□□□□ -0.75
LIMCH1-216ENST00000512820 ATF7IPQ6VMQ6 1270 aa10.39□□□□□ -0.75
LIMCH1-216ENST00000512820 TESK2Q96S53 571 aa10.39□□□□□ -0.75
LIMCH1-216ENST00000512820 CT47B1P0C2W7 299 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 149.3 ms