RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.71□□□□□ -0.21
NUP54-209ENST00000510569 FECHP22830 423 aa13.7□□□□□ -0.22
NUP54-209ENST00000510569 GPIHBP1Q8IV16 184 aa13.7□□□□□ -0.22
NUP54-209ENST00000510569 MTRQ99707 1265 aa13.7□□□□□ -0.22
NUP54-209ENST00000510569 METTL3Q86U44 580 aaKnown RBP13.69□□□□□ -0.22
NUP54-209ENST00000510569 IL21Q9HBE4 155 aa13.68□□□□□ -0.22
NUP54-209ENST00000510569 PRR14Q9BWN1 585 aa13.66□□□□□ -0.22
NUP54-209ENST00000510569 TULP1O00294 542 aaPredicted RBP13.63□□□□□ -0.23
NUP54-209ENST00000510569 ZNF516Q92618 1163 aa13.6□□□□□ -0.23
NUP54-209ENST00000510569 SLC10A3P09131 477 aa13.59□□□□□ -0.23
NUP54-209ENST00000510569 ACTN4O43707 911 aaKnown RBP13.57□□□□□ -0.24
NUP54-209ENST00000510569 CFHP08603 1231 aa13.57□□□□□ -0.24
NUP54-209ENST00000510569 KMT5BQ4FZB7 885 aa13.57□□□□□ -0.24
NUP54-209ENST00000510569 PCDHB3Q9Y5E6 796 aa13.57□□□□□ -0.24
NUP54-209ENST00000510569 COPS2P61201 443 aa13.56□□□□□ -0.24
NUP54-209ENST00000510569 PHOX2BQ99453 314 aa13.54□□□□□ -0.24
NUP54-209ENST00000510569 ZPR1O75312 459 aa13.53□□□□□ -0.24
NUP54-209ENST00000510569 MAP2K5Q13163 448 aa13.53□□□□□ -0.24
NUP54-209ENST00000510569 BLOC1S3Q6QNY0 202 aa13.53□□□□□ -0.24
NUP54-209ENST00000510569 DAXXQ9UER7 740 aaPredicted RBP13.53□□□□□ -0.24
NUP54-209ENST00000510569 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.51□□□□□ -0.25
NUP54-209ENST00000510569 NKX2-3Q8TAU0 364 aa13.51□□□□□ -0.25
NUP54-209ENST00000510569 RSPH4AQ5TD94 716 aa13.5□□□□□ -0.25
NUP54-209ENST00000510569 NLRP7Q8WX94 980 aa13.5□□□□□ -0.25
NUP54-209ENST00000510569 PPP1R18Q6NYC8 613 aa13.49□□□□□ -0.25
NUP54-209ENST00000510569 MINK1Q8N4C8 1332 aaPredicted RBP13.46□□□□□ -0.25
NUP54-209ENST00000510569 IRF6O14896 467 aa13.46□□□□□ -0.25
NUP54-209ENST00000510569 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.46□□□□□ -0.25
NUP54-209ENST00000510569 SULF1Q8IWU6 871 aa13.45□□□□□ -0.26
NUP54-209ENST00000510569 LMOD2Q6P5Q4 547 aa13.44□□□□□ -0.26
NUP54-209ENST00000510569 DDX11L8A8MPP1 907 aa13.43□□□□□ -0.26
NUP54-209ENST00000510569 TLL1O43897 1013 aa13.43□□□□□ -0.26
NUP54-209ENST00000510569 RDH13Q8NBN7 331 aa13.43□□□□□ -0.26
NUP54-209ENST00000510569 NR1I2O75469 434 aa13.42□□□□□ -0.26
NUP54-209ENST00000510569 GGCXP38435 758 aa13.42□□□□□ -0.26
NUP54-209ENST00000510569 TMUB1Q9BVT8 246 aa13.42□□□□□ -0.26
NUP54-209ENST00000510569 IRX2Q9BZI1 471 aaPredicted RBP13.42□□□□□ -0.26
NUP54-209ENST00000510569 CCDC102AQ96A19 550 aa13.4□□□□□ -0.26
NUP54-209ENST00000510569 GCGRP47871 477 aa13.39□□□□□ -0.27
NUP54-209ENST00000510569 V9GY48 417 aaPredicted RBP13.38□□□□□ -0.27
NUP54-209ENST00000510569 ADH1BP00325 375 aa13.37□□□□□ -0.27
NUP54-209ENST00000510569 PRKD2Q9BZL6 878 aa13.37□□□□□ -0.27
NUP54-209ENST00000510569 FUT2Q10981 343 aa13.36□□□□□ -0.27
NUP54-209ENST00000510569 PUS10Q3MIT2 529 aaKnown RBP13.36□□□□□ -0.27
NUP54-209ENST00000510569 SCUBE3Q8IX30 993 aa13.36□□□□□ -0.27
NUP54-209ENST00000510569 CD46P15529 392 aa13.34□□□□□ -0.27
NUP54-209ENST00000510569 MORN1Q5T089 497 aa13.34□□□□□ -0.27
NUP54-209ENST00000510569 RNF223E7ERA6 249 aa13.33□□□□□ -0.28
NUP54-209ENST00000510569 ATP6V1AP38606 617 aa13.33□□□□□ -0.28
NUP54-209ENST00000510569 MDM2Q00987 491 aaPredicted RBP13.33□□□□□ -0.28
NUP54-209ENST00000510569 S1PR4O95977 384 aa13.32□□□□□ -0.28
NUP54-209ENST00000510569 ZMYND10O75800 440 aa13.31□□□□□ -0.28
NUP54-209ENST00000510569 BARGINQ6ZT62 677 aa13.31□□□□□ -0.28
NUP54-209ENST00000510569 ANKLE1Q8NAG6 615 aa13.3□□□□□ -0.28
NUP54-209ENST00000510569 ZC3H15Q8WU90 426 aaKnown RBP13.3□□□□□ -0.28
NUP54-209ENST00000510569 THAP11Q96EK4 314 aa13.29□□□□□ -0.28
NUP54-209ENST00000510569 GPCPD1Q9NPB8 672 aa13.29□□□□□ -0.28
NUP54-209ENST00000510569 CLCN1P35523 988 aa13.28□□□□□ -0.28
NUP54-209ENST00000510569 SPSB2Q99619 263 aa13.28□□□□□ -0.28
NUP54-209ENST00000510569 SLC6A16Q9GZN6 736 aa13.28□□□□□ -0.28
NUP54-209ENST00000510569 SLC27A5Q9Y2P5 690 aa13.27□□□□□ -0.29
NUP54-209ENST00000510569 SALL2Q9Y467 1007 aaPredicted RBP13.27□□□□□ -0.29
NUP54-209ENST00000510569 EMID1Q96A84 441 aaPredicted RBP13.26□□□□□ -0.29
NUP54-209ENST00000510569 GRIPAP1Q4V328 841 aa13.25□□□□□ -0.29
NUP54-209ENST00000510569 FAM217BQ9NTX9 383 aaPredicted RBP13.25□□□□□ -0.29
NUP54-209ENST00000510569 LAPTM4AQ15012 233 aa13.24□□□□□ -0.29
NUP54-209ENST00000510569 PPEF1O14829 653 aaPredicted RBP13.23□□□□□ -0.29
NUP54-209ENST00000510569 KDM4AO75164 1064 aa13.22□□□□□ -0.29
NUP54-209ENST00000510569 FMNL1O95466 1100 aaPredicted RBP13.22□□□□□ -0.29
NUP54-209ENST00000510569 KRI1Q8N9T8 703 aaKnown RBP13.22□□□□□ -0.29
NUP54-209ENST00000510569 USP46P62068 366 aa13.21□□□□□ -0.29
NUP54-209ENST00000510569 BRICD5Q6PL45 260 aa13.21□□□□□ -0.29
NUP54-209ENST00000510569 SLC19A1P41440 591 aa13.2□□□□□ -0.3
NUP54-209ENST00000510569 AMHR2Q16671 573 aa13.2□□□□□ -0.3
NUP54-209ENST00000510569 REPIN1Q9BWE0 567 aaKnown RBP13.2□□□□□ -0.3
NUP54-209ENST00000510569 GFRA3O60609 400 aa13.19□□□□□ -0.3
NUP54-209ENST00000510569 FAM160A2Q8N612 972 aaPredicted RBP13.19□□□□□ -0.3
NUP54-209ENST00000510569 RNF19BQ6ZMZ0 732 aa13.18□□□□□ -0.3
NUP54-209ENST00000510569 NRG2O14511 850 aaPredicted RBP13.17□□□□□ -0.3
NUP54-209ENST00000510569 Q3C1V9 767 aa13.17□□□□□ -0.3
NUP54-209ENST00000510569 MSS51Q4VC12 460 aa13.17□□□□□ -0.3
NUP54-209ENST00000510569 PLA2G2CQ5R387 149 aa13.17□□□□□ -0.3
NUP54-209ENST00000510569 SPRYD7Q5W111 196 aa13.17□□□□□ -0.3
NUP54-209ENST00000510569 HOXA2O43364 376 aa13.16□□□□□ -0.3
NUP54-209ENST00000510569 LIAT1Q6ZQX7 453 aa13.16□□□□□ -0.3
NUP54-209ENST00000510569 Q6ZNB5 142 aa13.15□□□□□ -0.3
NUP54-209ENST00000510569 PRDM9Q9NQV7 894 aa13.14□□□□□ -0.31
NUP54-209ENST00000510569 TTLL12Q14166 644 aaPredicted RBP13.13□□□□□ -0.31
NUP54-209ENST00000510569 TRIM67Q6ZTA4 783 aa13.13□□□□□ -0.31
NUP54-209ENST00000510569 ZNF598Q86UK7 904 aaKnown RBP13.13□□□□□ -0.31
NUP54-209ENST00000510569 HLA-CQ95604 372 aa13.13□□□□□ -0.31
NUP54-209ENST00000510569 PDZRN3Q9UPQ7 1066 aa13.12□□□□□ -0.31
NUP54-209ENST00000510569 SSTR3P32745 418 aaPredicted RBP13.11□□□□□ -0.31
NUP54-209ENST00000510569 FCF1Q9Y324 198 aaKnown RBP13.11□□□□□ -0.31
NUP54-209ENST00000510569 GIGYF2Q6Y7W6 1299 aaKnown RBP13.1□□□□□ -0.31
NUP54-209ENST00000510569 LCE2BO14633 110 aa13.08□□□□□ -0.32
NUP54-209ENST00000510569 TRIM66O15016 1216 aa13.08□□□□□ -0.32
NUP54-209ENST00000510569 RPIAP49247 311 aa13.08□□□□□ -0.32
NUP54-209ENST00000510569 MMP16P51512 607 aa13.08□□□□□ -0.32
NUP54-209ENST00000510569 ZNF697Q5TEC3 545 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms