RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 PRR14Q9BWN1 585 aa11.37□□□□□ -0.59
SMC4-227ENST00000497984 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.37□□□□□ -0.59
SMC4-227ENST00000497984 GPR37O15354 613 aa11.36□□□□□ -0.59
SMC4-227ENST00000497984 ZPR1O75312 459 aa11.36□□□□□ -0.59
SMC4-227ENST00000497984 HIC1Q14526 733 aa11.36□□□□□ -0.59
SMC4-227ENST00000497984 PXYLP1Q8TE99 480 aa11.36□□□□□ -0.59
SMC4-227ENST00000497984 PCDHB3Q9Y5E6 796 aa11.36□□□□□ -0.59
SMC4-227ENST00000497984 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.35□□□□□ -0.59
SMC4-227ENST00000497984 PRKD2Q9BZL6 878 aa11.35□□□□□ -0.59
SMC4-227ENST00000497984 HAP1P54257 671 aaPredicted RBP11.34□□□□□ -0.59
SMC4-227ENST00000497984 BLOC1S3Q6QNY0 202 aa11.34□□□□□ -0.59
SMC4-227ENST00000497984 KDM2AQ9Y2K7 1162 aa11.34□□□□□ -0.59
SMC4-227ENST00000497984 SLC10A3P09131 477 aa11.33□□□□□ -0.6
SMC4-227ENST00000497984 FECHP22830 423 aa11.33□□□□□ -0.6
SMC4-227ENST00000497984 SMYD5Q6GMV2 418 aa11.33□□□□□ -0.6
SMC4-227ENST00000497984 ACTN4O43707 911 aaKnown RBP11.32□□□□□ -0.6
SMC4-227ENST00000497984 OATP04181 439 aa11.32□□□□□ -0.6
SMC4-227ENST00000497984 CFHP08603 1231 aa11.31□□□□□ -0.6
SMC4-227ENST00000497984 METTL3Q86U44 580 aaKnown RBP11.31□□□□□ -0.6
SMC4-227ENST00000497984 V9GY48 417 aaPredicted RBP11.31□□□□□ -0.6
SMC4-227ENST00000497984 GNPATO15228 680 aa11.3□□□□□ -0.6
SMC4-227ENST00000497984 KMT5BQ4FZB7 885 aa11.3□□□□□ -0.6
SMC4-227ENST00000497984 TMUB1Q9BVT8 246 aa11.28□□□□□ -0.6
SMC4-227ENST00000497984 TLL1O43897 1013 aa11.27□□□□□ -0.61
SMC4-227ENST00000497984 GGCXP38435 758 aa11.27□□□□□ -0.61
SMC4-227ENST00000497984 LAPTM4AQ15012 233 aa11.26□□□□□ -0.61
SMC4-227ENST00000497984 GFRA3O60609 400 aa11.25□□□□□ -0.61
SMC4-227ENST00000497984 RNF223E7ERA6 249 aa11.23□□□□□ -0.61
SMC4-227ENST00000497984 TRAF7Q6Q0C0 670 aa11.23□□□□□ -0.61
SMC4-227ENST00000497984 EMID1Q96A84 441 aaPredicted RBP11.22□□□□□ -0.61
SMC4-227ENST00000497984 NRG2O14511 850 aaPredicted RBP11.2□□□□□ -0.62
SMC4-227ENST00000497984 GPIHBP1Q8IV16 184 aa11.2□□□□□ -0.62
SMC4-227ENST00000497984 NLRP7Q8WX94 980 aa11.2□□□□□ -0.62
SMC4-227ENST00000497984 PHOX2BQ99453 314 aa11.2□□□□□ -0.62
SMC4-227ENST00000497984 DAXXQ9UER7 740 aaPredicted RBP11.2□□□□□ -0.62
SMC4-227ENST00000497984 NR1I2O75469 434 aa11.19□□□□□ -0.62
SMC4-227ENST00000497984 S1PR4O95977 384 aa11.18□□□□□ -0.62
SMC4-227ENST00000497984 ADH1BP00325 375 aa11.18□□□□□ -0.62
SMC4-227ENST00000497984 PUS10Q3MIT2 529 aaKnown RBP11.17□□□□□ -0.62
SMC4-227ENST00000497984 RSPH4AQ5TD94 716 aa11.17□□□□□ -0.62
SMC4-227ENST00000497984 SCUBE3Q8IX30 993 aa11.17□□□□□ -0.62
SMC4-227ENST00000497984 ANKLE1Q8NAG6 615 aa11.17□□□□□ -0.62
SMC4-227ENST00000497984 PPEF1O14829 653 aaPredicted RBP11.16□□□□□ -0.62
SMC4-227ENST00000497984 VSIG10Q8N0Z9 540 aa11.16□□□□□ -0.62
SMC4-227ENST00000497984 DDX11L8A8MPP1 907 aa11.14□□□□□ -0.63
SMC4-227ENST00000497984 SLC19A1P41440 591 aa11.14□□□□□ -0.63
SMC4-227ENST00000497984 RDH13Q8NBN7 331 aa11.14□□□□□ -0.63
SMC4-227ENST00000497984 PDZRN3Q9UPQ7 1066 aa11.14□□□□□ -0.63
SMC4-227ENST00000497984 TRIM67Q6ZTA4 783 aa11.13□□□□□ -0.63
SMC4-227ENST00000497984 MORN1Q5T089 497 aa11.12□□□□□ -0.63
SMC4-227ENST00000497984 LIAT1Q6ZQX7 453 aa11.12□□□□□ -0.63
SMC4-227ENST00000497984 SLC6A16Q9GZN6 736 aa11.12□□□□□ -0.63
SMC4-227ENST00000497984 FUT2Q10981 343 aa11.11□□□□□ -0.63
SMC4-227ENST00000497984 SPRYD7Q5W111 196 aa11.11□□□□□ -0.63
SMC4-227ENST00000497984 GCGRP47871 477 aa11.1□□□□□ -0.63
SMC4-227ENST00000497984 SPSB2Q99619 263 aa11.1□□□□□ -0.63
SMC4-227ENST00000497984 PLA2G2CQ5R387 149 aa11.09□□□□□ -0.63
SMC4-227ENST00000497984 SULF1Q8IWU6 871 aa11.09□□□□□ -0.63
SMC4-227ENST00000497984 THAP11Q96EK4 314 aa11.09□□□□□ -0.63
SMC4-227ENST00000497984 ATP6V1AP38606 617 aa11.08□□□□□ -0.64
SMC4-227ENST00000497984 MAP2K5Q13163 448 aa11.08□□□□□ -0.64
SMC4-227ENST00000497984 ZNF598Q86UK7 904 aaKnown RBP11.08□□□□□ -0.64
SMC4-227ENST00000497984 SLC27A5Q9Y2P5 690 aa11.06□□□□□ -0.64
SMC4-227ENST00000497984 ZNF775Q96BV0 537 aaPredicted RBP11.05□□□□□ -0.64
SMC4-227ENST00000497984 PRR20EP86478 221 aa11.04□□□□□ -0.64
SMC4-227ENST00000497984 PRR20CP86479 221 aa11.04□□□□□ -0.64
SMC4-227ENST00000497984 PRR20DP86480 221 aa11.04□□□□□ -0.64
SMC4-227ENST00000497984 PRR20BP86481 221 aa11.04□□□□□ -0.64
SMC4-227ENST00000497984 PRR20AP86496 221 aa11.04□□□□□ -0.64
SMC4-227ENST00000497984 IRF6O14896 467 aa11.03□□□□□ -0.64
SMC4-227ENST00000497984 ZNF697Q5TEC3 545 aa11.03□□□□□ -0.64
SMC4-227ENST00000497984 ZNF787Q6DD87 383 aa11.03□□□□□ -0.64
SMC4-227ENST00000497984 FAM160A2Q8N612 972 aaPredicted RBP11.03□□□□□ -0.64
SMC4-227ENST00000497984 TULP1O00294 542 aaPredicted RBP11.02□□□□□ -0.65
SMC4-227ENST00000497984 CD46P15529 392 aa11.02□□□□□ -0.65
SMC4-227ENST00000497984 SALL2Q9Y467 1007 aaPredicted RBP11.02□□□□□ -0.65
SMC4-227ENST00000497984 GDF9O60383 454 aa11.01□□□□□ -0.65
SMC4-227ENST00000497984 FMNL1O95466 1100 aaPredicted RBP11.01□□□□□ -0.65
SMC4-227ENST00000497984 BRICD5Q6PL45 260 aa11.01□□□□□ -0.65
SMC4-227ENST00000497984 MINK1Q8N4C8 1332 aaPredicted RBP11□□□□□ -0.65
SMC4-227ENST00000497984 RNF19BQ6ZMZ0 732 aa10.99□□□□□ -0.65
SMC4-227ENST00000497984 PRDM9Q9NQV7 894 aa10.98□□□□□ -0.65
SMC4-227ENST00000497984 FCF1Q9Y324 198 aaKnown RBP10.98□□□□□ -0.65
SMC4-227ENST00000497984 MDM2Q00987 491 aaPredicted RBP10.97□□□□□ -0.65
SMC4-227ENST00000497984 CCDC102AQ96A19 550 aa10.97□□□□□ -0.65
SMC4-227ENST00000497984 TNFRSF10AO00220 468 aa10.96□□□□□ -0.65
SMC4-227ENST00000497984 GRIPAP1Q4V328 841 aa10.96□□□□□ -0.65
SMC4-227ENST00000497984 MSS51Q4VC12 460 aa10.96□□□□□ -0.65
SMC4-227ENST00000497984 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.96□□□□□ -0.651e-6■■■■■ 406.9
SMC4-227ENST00000497984 RPIAP49247 311 aa10.95□□□□□ -0.66
SMC4-227ENST00000497984 PKD2L1Q9P0L9 805 aa10.95□□□□□ -0.66
SMC4-227ENST00000497984 DGAT1O75907 488 aa10.94□□□□□ -0.66
SMC4-227ENST00000497984 KDM4AO75164 1064 aa10.93□□□□□ -0.66
SMC4-227ENST00000497984 MYT1Q01538 1121 aa10.93□□□□□ -0.66
SMC4-227ENST00000497984 PKDCCQ504Y2 493 aa10.93□□□□□ -0.66
SMC4-227ENST00000497984 Q3C1V9 767 aa10.91□□□□□ -0.66
SMC4-227ENST00000497984 FAM187AA6NFU0 413 aa10.9□□□□□ -0.66
SMC4-227ENST00000497984 LMOD2Q6P5Q4 547 aa10.9□□□□□ -0.66
SMC4-227ENST00000497984 HLA-CQ95604 372 aa10.9□□□□□ -0.66
SMC4-227ENST00000497984 FAM217BQ9NTX9 383 aaPredicted RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms