RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 ADAMTS8Q9UP79 889 aa14.93□□□□□ -0.02
CHMP3-209ENST00000494623 MSH5O43196 834 aa14.93□□□□□ -0.02
CHMP3-209ENST00000494623 PRKCSHP14314 528 aaPredicted RBP14.93□□□□□ -0.02
CHMP3-209ENST00000494623 PPP2R1AP30153 589 aa14.93□□□□□ -0.02
CHMP3-209ENST00000494623 AMER1Q5JTC6 1135 aaPredicted RBP14.92□□□□□ -0.02
CHMP3-209ENST00000494623 IQGAP1P46940 1657 aa14.92□□□□□ -0.02
CHMP3-209ENST00000494623 EIF3AQ14152 1382 aaKnown RBP14.91□□□□□ -0.02
CHMP3-209ENST00000494623 FANCIQ9NVI1 1328 aa14.91□□□□□ -0.02
CHMP3-209ENST00000494623 CD109Q6YHK3 1445 aa14.9□□□□□ -0.02
CHMP3-209ENST00000494623 EXOC6Q8TAG9 804 aa14.9□□□□□ -0.02
CHMP3-209ENST00000494623 MROH1Q8NDA8 1641 aa14.9□□□□□ -0.02
CHMP3-209ENST00000494623 WDR43Q15061 677 aaKnown RBP eCLIP14.89□□□□□ -0.03
CHMP3-209ENST00000494623 KIDINS220Q9ULH0 1771 aa14.89□□□□□ -0.03
CHMP3-209ENST00000494623 ZNF518AQ6AHZ1 1483 aa14.89□□□□□ -0.03
CHMP3-209ENST00000494623 BLMP54132 1417 aaPredicted RBP14.88□□□□□ -0.03
CHMP3-209ENST00000494623 EFCAB6Q5THR3 1501 aa14.86□□□□□ -0.03
CHMP3-209ENST00000494623 PLIN1O60240 522 aa14.86□□□□□ -0.03
CHMP3-209ENST00000494623 INSRP06213 1382 aa14.86□□□□□ -0.03
CHMP3-209ENST00000494623 SLC24A1O60721 1099 aa14.85□□□□□ -0.03
CHMP3-209ENST00000494623 RAPGEF3O95398 923 aa14.85□□□□□ -0.03
CHMP3-209ENST00000494623 MAP3K4Q9Y6R4 1608 aa14.84□□□□□ -0.03
CHMP3-209ENST00000494623 SYNMO15061 1565 aa14.84□□□□□ -0.03
CHMP3-209ENST00000494623 MYOM2P54296 1465 aa14.84□□□□□ -0.03
CHMP3-209ENST00000494623 ASXL1Q8IXJ9 1541 aa14.84□□□□□ -0.03
CHMP3-209ENST00000494623 PPRC1Q5VV67 1664 aaKnown RBP14.84□□□□□ -0.03
CHMP3-209ENST00000494623 KIF1BO60333 1816 aa14.84□□□□□ -0.03
CHMP3-209ENST00000494623 TRAK1Q9UPV9 953 aa14.84□□□□□ -0.03
CHMP3-209ENST00000494623 NOS1P29475 1434 aa14.84□□□□□ -0.03
CHMP3-209ENST00000494623 CARD14Q9BXL6 1004 aa14.83□□□□□ -0.04
CHMP3-209ENST00000494623 ABCA6Q8N139 1617 aa14.82□□□□□ -0.04
CHMP3-209ENST00000494623 POGZQ7Z3K3 1410 aa14.82□□□□□ -0.04
CHMP3-209ENST00000494623 CFAP65Q6ZU64 1925 aaKnown RBP14.82□□□□□ -0.04
CHMP3-209ENST00000494623 KIAA1210Q9ULL0 1709 aa14.82□□□□□ -0.04
CHMP3-209ENST00000494623 NEURL4Q96JN8 1562 aa14.82□□□□□ -0.04
CHMP3-209ENST00000494623 ERVK-7P63135 1459 aa14.81□□□□□ -0.04
CHMP3-209ENST00000494623 TMEM132EQ6IEE7 984 aa14.81□□□□□ -0.04
CHMP3-209ENST00000494623 ERICH6Q7L0X2 663 aa14.81□□□□□ -0.04
CHMP3-209ENST00000494623 NPATQ14207 1427 aa14.81□□□□□ -0.04
CHMP3-209ENST00000494623 ZMYM4Q5VZL5 1548 aa14.81□□□□□ -0.04
CHMP3-209ENST00000494623 LMTK2Q8IWU2 1503 aa14.81□□□□□ -0.04
CHMP3-209ENST00000494623 NUTM2DQ5VT03 806 aaPredicted RBP14.81□□□□□ -0.04
CHMP3-209ENST00000494623 CCDC146Q8IYE0 955 aa14.81□□□□□ -0.04
CHMP3-209ENST00000494623 CENPJQ9HC77 1338 aaPredicted RBP14.8□□□□□ -0.04
CHMP3-209ENST00000494623 MLH3Q9UHC1 1453 aa14.8□□□□□ -0.04
CHMP3-209ENST00000494623 MROH2AA6NES4 1674 aa14.8□□□□□ -0.04
CHMP3-209ENST00000494623 PLEKHH1Q9ULM0 1364 aa14.79□□□□□ -0.04
CHMP3-209ENST00000494623 KDM5AP29375 1690 aaKnown RBP14.79□□□□□ -0.04
CHMP3-209ENST00000494623 NPC1L1Q9UHC9 1359 aa14.79□□□□□ -0.04
CHMP3-209ENST00000494623 C14orf93Q9H972 538 aaKnown RBP14.79□□□□□ -0.04
CHMP3-209ENST00000494623 MYOM1P52179 1685 aa14.78□□□□□ -0.04
CHMP3-209ENST00000494623 PIK3C2GO75747 1445 aa14.78□□□□□ -0.04
CHMP3-209ENST00000494623 FRMPD1Q5SYB0 1578 aa14.78□□□□□ -0.04
CHMP3-209ENST00000494623 GOLGA2Q08379 1002 aa14.77□□□□□ -0.04
CHMP3-209ENST00000494623 CRBNQ96SW2 442 aa14.77□□□□□ -0.04
CHMP3-209ENST00000494623 NRXN1Q9ULB1 1477 aa14.77□□□□□ -0.04
CHMP3-209ENST00000494623 DUSP27Q5VZP5 1158 aa14.76□□□□□ -0.05
CHMP3-209ENST00000494623 SLC12A5Q9H2X9 1139 aa14.76□□□□□ -0.05
CHMP3-209ENST00000494623 SENP3Q9H4L4 574 aaPredicted RBP14.76□□□□□ -0.05
CHMP3-209ENST00000494623 ADGRB3O60242 1522 aa14.76□□□□□ -0.05
CHMP3-209ENST00000494623 APAF1O14727 1248 aa14.76□□□□□ -0.05
CHMP3-209ENST00000494623 CFAP74Q9C0B2 1584 aa14.76□□□□□ -0.05
CHMP3-209ENST00000494623 IFT172Q9UG01 1749 aa14.76□□□□□ -0.05
CHMP3-209ENST00000494623 HECW2Q9P2P5 1572 aa14.75□□□□□ -0.05
CHMP3-209ENST00000494623 BCL11AQ9H165 835 aa14.75□□□□□ -0.05
CHMP3-209ENST00000494623 C20orf194Q5TEA3 1177 aa14.75□□□□□ -0.05
CHMP3-209ENST00000494623 RPGRIP1LQ68CZ1 1315 aa14.75□□□□□ -0.05
CHMP3-209ENST00000494623 TNNT2P45379 298 aaPredicted RBP14.74□□□□□ -0.05
CHMP3-209ENST00000494623 ZNF521Q96K83 1311 aa14.74□□□□□ -0.05
CHMP3-209ENST00000494623 SBNO2Q9Y2G9 1366 aa14.73□□□□□ -0.05
CHMP3-209ENST00000494623 SLFN5Q08AF3 891 aa14.72□□□□□ -0.05
CHMP3-209ENST00000494623 MORC1Q86VD1 984 aa14.72□□□□□ -0.05
CHMP3-209ENST00000494623 ABCC3O15438 1527 aa14.72□□□□□ -0.05
CHMP3-209ENST00000494623 VGFO15240 615 aaPredicted RBP14.72□□□□□ -0.05
CHMP3-209ENST00000494623 IDI1Q13907 227 aa14.71□□□□□ -0.05
CHMP3-209ENST00000494623 SPINK5Q9NQ38 1064 aaPredicted RBP14.71□□□□□ -0.06
CHMP3-209ENST00000494623 NEO1Q92859 1461 aa14.71□□□□□ -0.06
CHMP3-209ENST00000494623 NSD3Q9BZ95 1437 aa14.7□□□□□ -0.06
CHMP3-209ENST00000494623 TCERG1O14776 1098 aaKnown RBP14.7□□□□□ -0.06
CHMP3-209ENST00000494623 CYB5RLQ6IPT4 315 aa14.7□□□□□ -0.06
CHMP3-209ENST00000494623 SETBP1Q9Y6X0 1596 aa14.7□□□□□ -0.06
CHMP3-209ENST00000494623 SAFB2Q14151 953 aaKnown RBP eCLIP14.7□□□□□ -0.06
CHMP3-209ENST00000494623 PPLO60437 1756 aa14.69□□□□□ -0.06
CHMP3-209ENST00000494623 ANP32AP39687 249 aaKnown RBP14.69□□□□□ -0.06
CHMP3-209ENST00000494623 MYO3AQ8NEV4 1616 aa14.68□□□□□ -0.06
CHMP3-209ENST00000494623 STK26Q9P289 416 aa14.68□□□□□ -0.06
CHMP3-209ENST00000494623 ADGRB1O14514 1584 aa14.68□□□□□ -0.06
CHMP3-209ENST00000494623 SKAP1Q86WV1 359 aa14.67□□□□□ -0.06
CHMP3-209ENST00000494623 TRMT2AQ8IZ69 625 aaKnown RBP14.67□□□□□ -0.06
CHMP3-209ENST00000494623 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.67□□□□□ -0.06
CHMP3-209ENST00000494623 CABP2Q9NPB3 220 aa14.66□□□□□ -0.06
CHMP3-209ENST00000494623 NOP58Q9Y2X3 529 aaKnown RBP14.66□□□□□ -0.06
CHMP3-209ENST00000494623 CAMSAP1Q5T5Y3 1602 aa14.66□□□□□ -0.06
CHMP3-209ENST00000494623 EVC2Q86UK5 1308 aa14.66□□□□□ -0.06
CHMP3-209ENST00000494623 PDE4AP27815 886 aa14.66□□□□□ -0.06
CHMP3-209ENST00000494623 NEUROD2Q15784 382 aa14.66□□□□□ -0.06
CHMP3-209ENST00000494623 DMRT2Q9Y5R5 561 aa14.66□□□□□ -0.06
CHMP3-209ENST00000494623 YEATS2Q9ULM3 1422 aa14.66□□□□□ -0.06
CHMP3-209ENST00000494623 SIGLEC1Q9BZZ2 1709 aa14.65□□□□□ -0.06
CHMP3-209ENST00000494623 POLR3AO14802 1390 aaPredicted RBP14.65□□□□□ -0.06
CHMP3-209ENST00000494623 DIP2CQ9Y2E4 1556 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms