RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 TNRQ92752 1358 aa18.83■□□□□ 0.61
UPF3A-210ENST00000493727 CAMSAP2Q08AD1 1489 aa18.82■□□□□ 0.6
UPF3A-210ENST00000493727 VWDEQ8N2E2 1590 aa18.81■□□□□ 0.6
UPF3A-210ENST00000493727 SHANK2Q9UPX8 1470 aa18.81■□□□□ 0.6
UPF3A-210ENST00000493727 MED1Q15648 1581 aaPredicted RBP18.81■□□□□ 0.6
UPF3A-210ENST00000493727 FBXO31Q5XUX0 539 aaPredicted RBP18.8■□□□□ 0.6
UPF3A-210ENST00000493727 DEPDC5O75140 1603 aa18.79■□□□□ 0.6
UPF3A-210ENST00000493727 ALKQ9UM73 1620 aa18.79■□□□□ 0.6
UPF3A-210ENST00000493727 PHF12Q96QT6 1004 aa18.79■□□□□ 0.6
UPF3A-210ENST00000493727 NLRP1Q9C000 1473 aa18.78■□□□□ 0.6
UPF3A-210ENST00000493727 ARHGEF5Q12774 1597 aa18.78■□□□□ 0.6
UPF3A-210ENST00000493727 MED14O60244 1454 aa18.77■□□□□ 0.6
UPF3A-210ENST00000493727 KIF3BO15066 747 aa18.77■□□□□ 0.6
UPF3A-210ENST00000493727 CHRM1P11229 460 aaPredicted RBP18.77■□□□□ 0.6
UPF3A-210ENST00000493727 MAP3K1Q13233 1512 aa18.77■□□□□ 0.6
UPF3A-210ENST00000493727 RNF17Q9BXT8 1623 aaKnown RBP18.77■□□□□ 0.6
UPF3A-210ENST00000493727 LRRC9Q6ZRR7 1453 aa18.77■□□□□ 0.59
UPF3A-210ENST00000493727 UGGT1Q9NYU2 1555 aa18.76■□□□□ 0.59
UPF3A-210ENST00000493727 PYGBP11216 843 aa18.76■□□□□ 0.59
UPF3A-210ENST00000493727 MIA2Q96PC5 1412 aa18.75■□□□□ 0.59
UPF3A-210ENST00000493727 HSPA1LP34931 641 aa18.75■□□□□ 0.59
UPF3A-210ENST00000493727 KIF12Q96FN5 646 aa18.75■□□□□ 0.59
UPF3A-210ENST00000493727 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.75■□□□□ 0.59
UPF3A-210ENST00000493727 IQGAP1P46940 1657 aa18.74■□□□□ 0.59
UPF3A-210ENST00000493727 STRCP1A6NGW2 1772 aa18.73■□□□□ 0.59
UPF3A-210ENST00000493727 ZC3H13Q5T200 1668 aaKnown RBP18.73■□□□□ 0.59
UPF3A-210ENST00000493727 TSPY4P0CV99 314 aa18.73■□□□□ 0.59
UPF3A-210ENST00000493727 TSPY10P0CW01 314 aa18.73■□□□□ 0.59
UPF3A-210ENST00000493727 NPHP4O75161 1426 aaPredicted RBP18.72■□□□□ 0.59
UPF3A-210ENST00000493727 WASHC2CQ9Y4E1 1318 aa18.72■□□□□ 0.59
UPF3A-210ENST00000493727 ABCC3O15438 1527 aa18.71■□□□□ 0.59
UPF3A-210ENST00000493727 TOM1O60784 492 aa18.71■□□□□ 0.59
UPF3A-210ENST00000493727 MAST1Q9Y2H9 1570 aa18.71■□□□□ 0.59
UPF3A-210ENST00000493727 ECM2O94769 699 aaPredicted RBP18.7■□□□□ 0.58
UPF3A-210ENST00000493727 PIP4K2BP78356 416 aa18.7■□□□□ 0.58
UPF3A-210ENST00000493727 ANKLE2Q86XL3 938 aa18.7■□□□□ 0.58
UPF3A-210ENST00000493727 MROH1Q8NDA8 1641 aa18.7■□□□□ 0.58
UPF3A-210ENST00000493727 EIF2AK4Q9P2K8 1649 aaKnown RBP18.7■□□□□ 0.58
UPF3A-210ENST00000493727 SYNMO15061 1565 aa18.69■□□□□ 0.58
UPF3A-210ENST00000493727 THEMISQ8N1K5 641 aaPredicted RBP18.69■□□□□ 0.58
UPF3A-210ENST00000493727 MAP3K13O43283 966 aa18.67■□□□□ 0.58
UPF3A-210ENST00000493727 ERVK-7P63135 1459 aa18.66■□□□□ 0.58
UPF3A-210ENST00000493727 MYOM3Q5VTT5 1437 aa18.66■□□□□ 0.58
UPF3A-210ENST00000493727 LRRC7Q96NW7 1537 aa18.65■□□□□ 0.58
UPF3A-210ENST00000493727 CEP152O94986 1710 aa18.65■□□□□ 0.58
UPF3A-210ENST00000493727 UBR1Q8IWV7 1749 aa18.65■□□□□ 0.58
UPF3A-210ENST00000493727 PPARGC1BQ86YN6 1023 aaKnown RBP18.64■□□□□ 0.57
UPF3A-210ENST00000493727 SP7Q8TDD2 431 aaPredicted RBP18.64■□□□□ 0.57
UPF3A-210ENST00000493727 CLCN6P51797 869 aa18.62■□□□□ 0.57
UPF3A-210ENST00000493727 KANK4Q5T7N3 995 aaPredicted RBP18.62■□□□□ 0.57
UPF3A-210ENST00000493727 SGIP1Q9BQI5 828 aa18.62■□□□□ 0.57
UPF3A-210ENST00000493727 CFAP65Q6ZU64 1925 aaKnown RBP18.62■□□□□ 0.57
UPF3A-210ENST00000493727 XIRP1Q702N8 1843 aaKnown RBP18.59■□□□□ 0.57
UPF3A-210ENST00000493727 GABBR2O75899 941 aa18.59■□□□□ 0.57
UPF3A-210ENST00000493727 RNF25Q96BH1 459 aaPredicted RBP18.59■□□□□ 0.57
UPF3A-210ENST00000493727 PCDHB13Q9Y5F0 798 aa18.59■□□□□ 0.57
UPF3A-210ENST00000493727 ARHGAP23Q9P227 1491 aa18.58■□□□□ 0.57
UPF3A-210ENST00000493727 MS4A3Q96HJ5 214 aa18.58■□□□□ 0.56
UPF3A-210ENST00000493727 SLIT1O75093 1534 aa18.58■□□□□ 0.56
UPF3A-210ENST00000493727 PRDM15P57071 1507 aaPredicted RBP18.58■□□□□ 0.56
UPF3A-210ENST00000493727 SCAF11Q99590 1463 aaKnown RBP18.58■□□□□ 0.56
UPF3A-210ENST00000493727 RGL2O15211 777 aa18.57■□□□□ 0.56
UPF3A-210ENST00000493727 DUOX2Q9NRD8 1548 aa18.57■□□□□ 0.56
UPF3A-210ENST00000493727 CROCC2H7BZ55 1655 aa18.56■□□□□ 0.56
UPF3A-210ENST00000493727 GALR2O43603 387 aaPredicted RBP18.55■□□□□ 0.56
UPF3A-210ENST00000493727 IFNL1Q8IU54 200 aa18.55■□□□□ 0.56
UPF3A-210ENST00000493727 PTPN23Q9H3S7 1636 aa18.55■□□□□ 0.56
UPF3A-210ENST00000493727 ARHGAP31Q2M1Z3 1444 aa18.54■□□□□ 0.56
UPF3A-210ENST00000493727 PCDHB8Q9UN66 801 aa18.53■□□□□ 0.56
UPF3A-210ENST00000493727 ZNF467Q7Z7K2 595 aaPredicted RBP18.51■□□□□ 0.55
UPF3A-210ENST00000493727 ERBINQ96RT1 1412 aa18.5■□□□□ 0.55
UPF3A-210ENST00000493727 PIK3C2BO00750 1634 aa18.5■□□□□ 0.55
UPF3A-210ENST00000493727 LTKP29376 864 aa18.5■□□□□ 0.55
UPF3A-210ENST00000493727 KIF15Q9NS87 1388 aa18.5■□□□□ 0.55
UPF3A-210ENST00000493727 KDM5AP29375 1690 aaKnown RBP18.5■□□□□ 0.55
UPF3A-210ENST00000493727 ABCC5O15440 1437 aa18.49■□□□□ 0.55
UPF3A-210ENST00000493727 FGD6Q6ZV73 1430 aa18.49■□□□□ 0.55
UPF3A-210ENST00000493727 RIOK3O14730 519 aaKnown RBP18.48■□□□□ 0.55
UPF3A-210ENST00000493727 DAPK1P53355 1430 aa18.48■□□□□ 0.55
UPF3A-210ENST00000493727 RGS17Q9UGC6 210 aaPredicted RBP18.45■□□□□ 0.54
UPF3A-210ENST00000493727 TMEM2Q9UHN6 1383 aa18.44■□□□□ 0.54
UPF3A-210ENST00000493727 TXNDC2Q86VQ3 553 aa18.44■□□□□ 0.54
UPF3A-210ENST00000493727 TRPC6Q9Y210 931 aa18.44■□□□□ 0.54
UPF3A-210ENST00000493727 LMTK2Q8IWU2 1503 aa18.44■□□□□ 0.54
UPF3A-210ENST00000493727 KANK1Q14678 1352 aa18.43■□□□□ 0.54
UPF3A-210ENST00000493727 ANKRD30AQ9BXX3 1397 aa18.43■□□□□ 0.54
UPF3A-210ENST00000493727 RRP7BPQ9NSQ0 103 aa18.43■□□□□ 0.54
UPF3A-210ENST00000493727 FAM135BQ49AJ0 1406 aa18.42■□□□□ 0.54
UPF3A-210ENST00000493727 EFCAB6Q5THR3 1501 aa18.42■□□□□ 0.54
UPF3A-210ENST00000493727 TET3O43151 1660 aa18.41■□□□□ 0.54
UPF3A-210ENST00000493727 NWD1Q149M9 1564 aa18.4■□□□□ 0.54
UPF3A-210ENST00000493727 ROBO1Q9Y6N7 1651 aa18.39■□□□□ 0.53
UPF3A-210ENST00000493727 EID1Q9Y6B2 187 aa18.39■□□□□ 0.53
UPF3A-210ENST00000493727 TMEM94Q12767 1356 aa18.38■□□□□ 0.53
UPF3A-210ENST00000493727 NOS1P29475 1434 aa18.37■□□□□ 0.53
UPF3A-210ENST00000493727 ADGRB3O60242 1522 aa18.37■□□□□ 0.53
UPF3A-210ENST00000493727 VGFO15240 615 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-210ENST00000493727 ADGRL2O95490 1459 aa18.36■□□□□ 0.53
UPF3A-210ENST00000493727 NKTRP30414 1462 aaKnown RBP18.36■□□□□ 0.53
UPF3A-210ENST00000493727 PDAP1Q13442 181 aaKnown RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms