RNA–Protein interactions for RNA: ENST00000491541.1

SREBF2-208, Transcript of sterol regulatory element binding transcription factor 2, human

TSL 1 (best)

Gene SREBF2, Length 4,043 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF2-208	ENST00000491541	CNGB1	Q14028	1251 aa	Predicted RBP	13.82	□□□□□ -0.2
SREBF2-208	ENST00000491541	FANCA	O15360	1455 aa		13.82	□□□□□ -0.2
SREBF2-208	ENST00000491541	ADGRB3	O60242	1522 aa		13.82	□□□□□ -0.2
SREBF2-208	ENST00000491541	SALL2	Q9Y467	1007 aa	Predicted RBP	13.82	□□□□□ -0.2
SREBF2-208	ENST00000491541	STAC3	Q96MF2	364 aa		13.81	□□□□□ -0.2
SREBF2-208	ENST00000491541	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.81	□□□□□ -0.2
SREBF2-208	ENST00000491541	NGEF	Q8N5V2	710 aa		13.81	□□□□□ -0.2
SREBF2-208	ENST00000491541	B4GALNT3	Q6L9W6	998 aa		13.8	□□□□□ -0.2
SREBF2-208	ENST00000491541	AAMP	Q13685	434 aa		13.79	□□□□□ -0.2
SREBF2-208	ENST00000491541	TDRD9	Q8NDG6	1382 aa	Known RBP	13.79	□□□□□ -0.2
SREBF2-208	ENST00000491541	QRICH2	Q9H0J4	1663 aa		13.78	□□□□□ -0.2
SREBF2-208	ENST00000491541	PPM1G	O15355	546 aa	Predicted RBP	13.77	□□□□□ -0.2
SREBF2-208	ENST00000491541	MED14	O60244	1454 aa		13.77	□□□□□ -0.21
SREBF2-208	ENST00000491541	UGGT1	Q9NYU2	1555 aa		13.77	□□□□□ -0.21
SREBF2-208	ENST00000491541	ANP32A	P39687	249 aa	Known RBP	13.76	□□□□□ -0.21
SREBF2-208	ENST00000491541	SETD1A	O15047	1707 aa	Known RBP	13.76	□□□□□ -0.21
SREBF2-208	ENST00000491541	NPM2	Q86SE8	214 aa	Known RBP	13.76	□□□□□ -0.21
SREBF2-208	ENST00000491541	EFCAB6	Q5THR3	1501 aa		13.75	□□□□□ -0.21
SREBF2-208	ENST00000491541	PHF23	Q9BUL5	403 aa	Predicted RBP	13.75	□□□□□ -0.21
SREBF2-208	ENST00000491541	USP54	Q70EL1	1684 aa		13.75	□□□□□ -0.21
SREBF2-208	ENST00000491541	CHD1	O14646	1710 aa		13.75	□□□□□ -0.21
SREBF2-208	ENST00000491541	FAM50A	Q14320	339 aa	Known RBP	13.75	□□□□□ -0.21
SREBF2-208	ENST00000491541	CFAP74	Q9C0B2	1584 aa		13.74	□□□□□ -0.21
SREBF2-208	ENST00000491541	TESK2	Q96S53	571 aa		13.74	□□□□□ -0.21
SREBF2-208	ENST00000491541	USP19	O94966	1318 aa		13.74	□□□□□ -0.21
SREBF2-208	ENST00000491541	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.74	□□□□□ -0.21
SREBF2-208	ENST00000491541	FAM43A	Q8N2R8	423 aa		13.73	□□□□□ -0.21
SREBF2-208	ENST00000491541	ITSN1	Q15811	1721 aa		13.73	□□□□□ -0.21
SREBF2-208	ENST00000491541	PRG4	Q92954	1404 aa	Predicted RBP	13.73	□□□□□ -0.21
SREBF2-208	ENST00000491541	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.72	□□□□□ -0.21
SREBF2-208	ENST00000491541	KIF20B	Q96Q89	1820 aa		13.72	□□□□□ -0.21
SREBF2-208	ENST00000491541	IL27	Q8NEV9	243 aa		13.71	□□□□□ -0.22
SREBF2-208	ENST00000491541	DDRGK1	Q96HY6	314 aa		13.71	□□□□□ -0.22
SREBF2-208	ENST00000491541	PLB1	Q6P1J6	1458 aa		13.7	□□□□□ -0.22
SREBF2-208	ENST00000491541	RSPH4A	Q5TD94	716 aa		13.7	□□□□□ -0.22
SREBF2-208	ENST00000491541	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.7	□□□□□ -0.22
SREBF2-208	ENST00000491541	HECW2	Q9P2P5	1572 aa		13.7	□□□□□ -0.22
SREBF2-208	ENST00000491541	FAM9B	Q8IZU0	186 aa		13.7	□□□□□ -0.22
SREBF2-208	ENST00000491541	SCAF11	Q99590	1463 aa	Known RBP	13.7	□□□□□ -0.22
SREBF2-208	ENST00000491541	C8orf34	Q49A92	452 aa		13.7	□□□□□ -0.22
SREBF2-208	ENST00000491541	COL3A1	P02461	1466 aa	Predicted RBP	13.69	□□□□□ -0.22
SREBF2-208	ENST00000491541	NLRP13	Q86W25	1043 aa		13.69	□□□□□ -0.22
SREBF2-208	ENST00000491541	ABCC3	O15438	1527 aa		13.69	□□□□□ -0.22
SREBF2-208	ENST00000491541	TMEM131L	A2VDJ0	1609 aa		13.68	□□□□□ -0.22
SREBF2-208	ENST00000491541	LRRC7	Q96NW7	1537 aa		13.68	□□□□□ -0.22
SREBF2-208	ENST00000491541	NKTR	P30414	1462 aa	Known RBP	13.68	□□□□□ -0.22
SREBF2-208	ENST00000491541	DDIT3	P35638	169 aa		13.68	□□□□□ -0.22
SREBF2-208	ENST00000491541	PDE4A	P27815	886 aa		13.68	□□□□□ -0.22
SREBF2-208	ENST00000491541	CRYBG1	Q9Y4K1	1723 aa		13.68	□□□□□ -0.22
SREBF2-208	ENST00000491541	ASXL2	Q76L83	1435 aa		13.68	□□□□□ -0.22
SREBF2-208	ENST00000491541	FSD2	A1L4K1	749 aa		13.67	□□□□□ -0.22
SREBF2-208	ENST00000491541	ANTXR1	Q9H6X2	564 aa		13.67	□□□□□ -0.22
SREBF2-208	ENST00000491541	ERVK-7	P63135	1459 aa		13.66	□□□□□ -0.22
SREBF2-208	ENST00000491541	MRS2	Q9HD23	443 aa		13.66	□□□□□ -0.22
SREBF2-208	ENST00000491541	KNDC1	Q76NI1	1749 aa		13.66	□□□□□ -0.22
SREBF2-208	ENST00000491541	SENP3-EIF4A1	A0A087X0R7	540 aa		13.66	□□□□□ -0.22
SREBF2-208	ENST00000491541	POLR3GL	Q9BT43	218 aa		13.65	□□□□□ -0.22
SREBF2-208	ENST00000491541	NRK	Q7Z2Y5	1582 aa		13.65	□□□□□ -0.22
SREBF2-208	ENST00000491541	KIDINS220	Q9ULH0	1771 aa		13.65	□□□□□ -0.22
SREBF2-208	ENST00000491541	CAMSAP1	Q5T5Y3	1602 aa		13.65	□□□□□ -0.22
SREBF2-208	ENST00000491541	RIMS1	Q86UR5	1692 aa	Known RBP	13.65	□□□□□ -0.22
SREBF2-208	ENST00000491541	LAS1L	Q9Y4W2	734 aa	Known RBP	13.65	□□□□□ -0.22
SREBF2-208	ENST00000491541	POLR3A	O14802	1390 aa	Predicted RBP	13.64	□□□□□ -0.23
SREBF2-208	ENST00000491541	PPIP5K1	Q6PFW1	1433 aa		13.64	□□□□□ -0.23
SREBF2-208	ENST00000491541	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.63	□□□□□ -0.23
SREBF2-208	ENST00000491541	PUS7	Q96PZ0	661 aa	Known RBP	13.62	□□□□□ -0.23
SREBF2-208	ENST00000491541	ISY1	Q9ULR0	285 aa	Known RBP	13.62	□□□□□ -0.23
SREBF2-208	ENST00000491541	DISP3	Q9P2K9	1392 aa		13.62	□□□□□ -0.23
SREBF2-208	ENST00000491541	NEXMIF	Q5QGS0	1516 aa		13.62	□□□□□ -0.23
SREBF2-208	ENST00000491541	CLEC17A	Q6ZS10	378 aa		13.61	□□□□□ -0.23
SREBF2-208	ENST00000491541	CARMIL2	Q6F5E8	1435 aa		13.61	□□□□□ -0.23
SREBF2-208	ENST00000491541	DIP2A	Q14689	1571 aa		13.6	□□□□□ -0.23
SREBF2-208	ENST00000491541	NUP155	O75694	1391 aa		13.6	□□□□□ -0.23
SREBF2-208	ENST00000491541	ARHGEF40	Q8TER5	1519 aa		13.6	□□□□□ -0.23
SREBF2-208	ENST00000491541	SIGLEC1	Q9BZZ2	1709 aa		13.6	□□□□□ -0.23
SREBF2-208	ENST00000491541	PLEKHH1	Q9ULM0	1364 aa		13.6	□□□□□ -0.23
SREBF2-208	ENST00000491541	GSE1	Q14687	1217 aa		13.59	□□□□□ -0.23
SREBF2-208	ENST00000491541	NALCN	Q8IZF0	1738 aa		13.59	□□□□□ -0.23
SREBF2-208	ENST00000491541	RSPH6A	Q9H0K4	717 aa		13.59	□□□□□ -0.23
SREBF2-208	ENST00000491541	NEFM	P07197	916 aa		13.59	□□□□□ -0.23
SREBF2-208	ENST00000491541	RCAN3	Q9UKA8	241 aa		13.59	□□□□□ -0.23
SREBF2-208	ENST00000491541	RGPD1	P0DJD0	1748 aa		13.58	□□□□□ -0.23
SREBF2-208	ENST00000491541	GLI2	P10070	1586 aa		13.58	□□□□□ -0.23
SREBF2-208	ENST00000491541	DUSP27	Q5VZP5	1158 aa		13.58	□□□□□ -0.24
SREBF2-208	ENST00000491541	KLHL34	Q8N239	644 aa		13.58	□□□□□ -0.24
SREBF2-208	ENST00000491541	P3H3	Q8IVL6	736 aa		13.57	□□□□□ -0.24
SREBF2-208	ENST00000491541	PLCH2	O75038	1416 aa		13.56	□□□□□ -0.24
SREBF2-208	ENST00000491541	AKAP12	Q02952	1782 aa		13.56	□□□□□ -0.24
SREBF2-208	ENST00000491541	CGNL1	Q0VF96	1302 aa		13.56	□□□□□ -0.24
SREBF2-208	ENST00000491541	MON2	Q7Z3U7	1717 aa		13.55	□□□□□ -0.24
SREBF2-208	ENST00000491541	TERF1	P54274	439 aa		13.54	□□□□□ -0.24
SREBF2-208	ENST00000491541	ZFYVE9	O95405	1425 aa		13.54	□□□□□ -0.24
SREBF2-208	ENST00000491541	CCDC27	Q2M243	656 aa		13.54	□□□□□ -0.24
SREBF2-208	ENST00000491541	LRRC37A3	O60309	1634 aa		13.54	□□□□□ -0.24
SREBF2-208	ENST00000491541	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.53	□□□□□ -0.24
SREBF2-208	ENST00000491541	PREX1	Q8TCU6	1659 aa		13.53	□□□□□ -0.24
SREBF2-208	ENST00000491541	DAXX	Q9UER7	740 aa	Predicted RBP	13.53	□□□□□ -0.24
SREBF2-208	ENST00000491541	ATP7A	Q04656	1500 aa		13.53	□□□□□ -0.24
SREBF2-208	ENST00000491541	PIK3R4	Q99570	1358 aa		13.52	□□□□□ -0.24
SREBF2-208	ENST00000491541	RIMBP3C	A6NJZ7	1639 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms