RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 RBM46Q8TBY0 533 aaKnown RBP12.7□□□□□ -0.38
SCN1A-206ENST00000491429 TMEM134Q9H6X4 195 aa12.7□□□□□ -0.38
SCN1A-206ENST00000491429 GGCXP38435 758 aa12.69□□□□□ -0.38
SCN1A-206ENST00000491429 TRAF7Q6Q0C0 670 aa12.69□□□□□ -0.38
SCN1A-206ENST00000491429 PRR14Q9BWN1 585 aa12.68□□□□□ -0.38
SCN1A-206ENST00000491429 RCCD1A6NED2 376 aa12.67□□□□□ -0.38
SCN1A-206ENST00000491429 SEMA3EO15041 775 aa12.66□□□□□ -0.38
SCN1A-206ENST00000491429 TLL1O43897 1013 aa12.65□□□□□ -0.38
SCN1A-206ENST00000491429 TMUB1Q9BVT8 246 aa12.65□□□□□ -0.38
SCN1A-206ENST00000491429 PDZRN3Q9UPQ7 1066 aa12.64□□□□□ -0.39
SCN1A-206ENST00000491429 RNF223E7ERA6 249 aa12.62□□□□□ -0.39
SCN1A-206ENST00000491429 FCHSD2O94868 740 aa12.62□□□□□ -0.39
SCN1A-206ENST00000491429 CFHP08603 1231 aa12.62□□□□□ -0.39
SCN1A-206ENST00000491429 P3H3Q8IVL6 736 aa12.62□□□□□ -0.39
SCN1A-206ENST00000491429 ACTN4O43707 911 aaKnown RBP12.61□□□□□ -0.39
SCN1A-206ENST00000491429 EMID1Q96A84 441 aaPredicted RBP12.61□□□□□ -0.39
SCN1A-206ENST00000491429 SLC10A3P09131 477 aa12.6□□□□□ -0.39
SCN1A-206ENST00000491429 KMT5BQ4FZB7 885 aa12.59□□□□□ -0.39
SCN1A-206ENST00000491429 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.57□□□□□ -0.4
SCN1A-206ENST00000491429 PPEF1O14829 653 aaPredicted RBP12.56□□□□□ -0.4
SCN1A-206ENST00000491429 S1PR4O95977 384 aa12.56□□□□□ -0.4
SCN1A-206ENST00000491429 SLC19A1P41440 591 aa12.56□□□□□ -0.4
SCN1A-206ENST00000491429 PXYLP1Q8TE99 480 aa12.56□□□□□ -0.4
SCN1A-206ENST00000491429 TRIM67Q6ZTA4 783 aa12.55□□□□□ -0.4
SCN1A-206ENST00000491429 RBM26Q5T8P6 1007 aaKnown RBP12.53□□□□□ -0.4
SCN1A-206ENST00000491429 OATP04181 439 aa12.52□□□□□ -0.41
SCN1A-206ENST00000491429 ANKLE1Q8NAG6 615 aa12.52□□□□□ -0.41
SCN1A-206ENST00000491429 HIC1Q14526 733 aa12.51□□□□□ -0.41
SCN1A-206ENST00000491429 METTL3Q86U44 580 aaKnown RBP12.51□□□□□ -0.41
SCN1A-206ENST00000491429 TESPA1A2RU30 521 aaPredicted RBP12.5□□□□□ -0.41
SCN1A-206ENST00000491429 ADH1BP00325 375 aa12.5□□□□□ -0.41
SCN1A-206ENST00000491429 FECHP22830 423 aa12.5□□□□□ -0.41
SCN1A-206ENST00000491429 SPRYD7Q5W111 196 aa12.5□□□□□ -0.41
SCN1A-206ENST00000491429 NR1I2O75469 434 aa12.49□□□□□ -0.41
SCN1A-206ENST00000491429 LIAT1Q6ZQX7 453 aa12.49□□□□□ -0.41
SCN1A-206ENST00000491429 PUS10Q3MIT2 529 aaKnown RBP12.48□□□□□ -0.41
SCN1A-206ENST00000491429 ZNF598Q86UK7 904 aaKnown RBP12.46□□□□□ -0.41
SCN1A-206ENST00000491429 SCUBE3Q8IX30 993 aa12.46□□□□□ -0.41
SCN1A-206ENST00000491429 GPR37O15354 613 aa12.45□□□□□ -0.42
SCN1A-206ENST00000491429 PLA2G2CQ5R387 149 aa12.45□□□□□ -0.42
SCN1A-206ENST00000491429 ZNF787Q6DD87 383 aa12.45□□□□□ -0.42
SCN1A-206ENST00000491429 SLC6A16Q9GZN6 736 aa12.45□□□□□ -0.42
SCN1A-206ENST00000491429 GNPATO15228 680 aa12.43□□□□□ -0.42
SCN1A-206ENST00000491429 ZNF697Q5TEC3 545 aa12.43□□□□□ -0.42
SCN1A-206ENST00000491429 NLRP7Q8WX94 980 aa12.43□□□□□ -0.42
SCN1A-206ENST00000491429 PRR20EP86478 221 aa12.41□□□□□ -0.42
SCN1A-206ENST00000491429 PRR20CP86479 221 aa12.41□□□□□ -0.42
SCN1A-206ENST00000491429 PRR20DP86480 221 aa12.41□□□□□ -0.42
SCN1A-206ENST00000491429 PRR20BP86481 221 aa12.41□□□□□ -0.42
SCN1A-206ENST00000491429 PRR20AP86496 221 aa12.41□□□□□ -0.42
SCN1A-206ENST00000491429 PLCB2Q00722 1185 aa12.41□□□□□ -0.42
SCN1A-206ENST00000491429 RSPH4AQ5TD94 716 aa12.41□□□□□ -0.42
SCN1A-206ENST00000491429 TNFRSF10AO00220 468 aa12.4□□□□□ -0.42
SCN1A-206ENST00000491429 PKDCCQ504Y2 493 aa12.4□□□□□ -0.42
SCN1A-206ENST00000491429 SMYD5Q6GMV2 418 aa12.4□□□□□ -0.42
SCN1A-206ENST00000491429 RDH13Q8NBN7 331 aa12.4□□□□□ -0.42
SCN1A-206ENST00000491429 SPSB2Q99619 263 aa12.39□□□□□ -0.43
SCN1A-206ENST00000491429 DAXXQ9UER7 740 aaPredicted RBP12.39□□□□□ -0.43
SCN1A-206ENST00000491429 GDF9O60383 454 aa12.38□□□□□ -0.43
SCN1A-206ENST00000491429 MYT1Q01538 1121 aa12.38□□□□□ -0.43
SCN1A-206ENST00000491429 DDX11L8A8MPP1 907 aa12.37□□□□□ -0.43
SCN1A-206ENST00000491429 DGAT1O75907 488 aa12.37□□□□□ -0.43
SCN1A-206ENST00000491429 PHOX2BQ99453 314 aa12.37□□□□□ -0.43
SCN1A-206ENST00000491429 FUT2Q10981 343 aa12.36□□□□□ -0.43
SCN1A-206ENST00000491429 MORN1Q5T089 497 aa12.36□□□□□ -0.43
SCN1A-206ENST00000491429 FAM187AA6NFU0 413 aa12.34□□□□□ -0.43
SCN1A-206ENST00000491429 THAP11Q96EK4 314 aa12.33□□□□□ -0.44
SCN1A-206ENST00000491429 ZNF775Q96BV0 537 aaPredicted RBP12.32□□□□□ -0.44
SCN1A-206ENST00000491429 POTECB2RU33 542 aa12.31□□□□□ -0.44
SCN1A-206ENST00000491429 ATP6V1AP38606 617 aa12.31□□□□□ -0.44
SCN1A-206ENST00000491429 PKD2L1Q9P0L9 805 aa12.31□□□□□ -0.44
SCN1A-206ENST00000491429 SLC27A5Q9Y2P5 690 aa12.31□□□□□ -0.44
SCN1A-206ENST00000491429 GCGRP47871 477 aa12.3□□□□□ -0.44
SCN1A-206ENST00000491429 FAM160A2Q8N612 972 aaPredicted RBP12.3□□□□□ -0.44
SCN1A-206ENST00000491429 FOXC1Q12948 553 aa12.29□□□□□ -0.44
SCN1A-206ENST00000491429 FCF1Q9Y324 198 aaKnown RBP12.29□□□□□ -0.44
SCN1A-206ENST00000491429 GPIHBP1Q8IV16 184 aa12.28□□□□□ -0.44
SCN1A-206ENST00000491429 PRDM9Q9NQV7 894 aa12.28□□□□□ -0.44
SCN1A-206ENST00000491429 ST8SIA5O15466 376 aa12.27□□□□□ -0.45
SCN1A-206ENST00000491429 SULF1Q8IWU6 871 aa12.27□□□□□ -0.45
SCN1A-206ENST00000491429 FMNL1O95466 1100 aaPredicted RBP12.26□□□□□ -0.45
SCN1A-206ENST00000491429 RPIAP49247 311 aa12.25□□□□□ -0.45
SCN1A-206ENST00000491429 BRICD5Q6PL45 260 aa12.24□□□□□ -0.45
SCN1A-206ENST00000491429 HAP1P54257 671 aaPredicted RBP12.23□□□□□ -0.45
SCN1A-206ENST00000491429 RNF19BQ6ZMZ0 732 aa12.23□□□□□ -0.45
SCN1A-206ENST00000491429 AAASQ9NRG9 546 aa12.23□□□□□ -0.45
SCN1A-206ENST00000491429 KDM2AQ9Y2K7 1162 aa12.22□□□□□ -0.45
SCN1A-206ENST00000491429 SALL2Q9Y467 1007 aaPredicted RBP12.22□□□□□ -0.45
SCN1A-206ENST00000491429 LMOD2Q6P5Q4 547 aa12.21□□□□□ -0.45
SCN1A-206ENST00000491429 CD2BP2O95400 341 aaKnown RBP12.19□□□□□ -0.46
SCN1A-206ENST00000491429 MSS51Q4VC12 460 aa12.18□□□□□ -0.46
SCN1A-206ENST00000491429 TOR4AQ9NXH8 423 aa12.18□□□□□ -0.46
SCN1A-206ENST00000491429 CD46P15529 392 aa12.15□□□□□ -0.46
SCN1A-206ENST00000491429 GRIPAP1Q4V328 841 aa12.15□□□□□ -0.46
SCN1A-206ENST00000491429 CYP4X1Q8N118 509 aa12.15□□□□□ -0.46
SCN1A-206ENST00000491429 DACH1Q9UI36 760 aa12.15□□□□□ -0.46
SCN1A-206ENST00000491429 MAP2K5Q13163 448 aa12.14□□□□□ -0.47
SCN1A-206ENST00000491429 ZBTB24O43167 697 aaPredicted RBP12.12□□□□□ -0.47
SCN1A-206ENST00000491429 CRIPAKQ8N1N5 446 aa12.12□□□□□ -0.47
SCN1A-206ENST00000491429 AVPP01185 164 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms