RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 CNTLNQ9NXG0 1405 aa9.98□□□□□ -0.81
SYNE1-229ENST00000490866 PRDM15P57071 1507 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-229ENST00000490866 RNF17Q9BXT8 1623 aaKnown RBP9.97□□□□□ -0.81
SYNE1-229ENST00000490866 TONSLQ96HA7 1378 aa9.97□□□□□ -0.81
SYNE1-229ENST00000490866 PZPP20742 1482 aa9.97□□□□□ -0.81
SYNE1-229ENST00000490866 COL17A1Q9UMD9 1497 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-229ENST00000490866 FRMPD1Q5SYB0 1578 aa9.97□□□□□ -0.81
SYNE1-229ENST00000490866 NUBP1P53384 320 aa9.96□□□□□ -0.82
SYNE1-229ENST00000490866 KLHL34Q8N239 644 aa9.96□□□□□ -0.82
SYNE1-229ENST00000490866 ARID4BQ4LE39 1312 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-229ENST00000490866 VWDEQ8N2E2 1590 aa9.96□□□□□ -0.82
SYNE1-229ENST00000490866 ABCA6Q8N139 1617 aa9.96□□□□□ -0.82
SYNE1-229ENST00000490866 ZC3H13Q5T200 1668 aaKnown RBP9.96□□□□□ -0.82
SYNE1-229ENST00000490866 HDGFP51858 240 aaKnown RBP9.95□□□□□ -0.82
SYNE1-229ENST00000490866 CCDC144AA2RUR9 1427 aa9.95□□□□□ -0.82
SYNE1-229ENST00000490866 YEATS2Q9ULM3 1422 aa9.95□□□□□ -0.82
SYNE1-229ENST00000490866 ARHGEF40Q8TER5 1519 aa9.95□□□□□ -0.82
SYNE1-229ENST00000490866 TET3O43151 1660 aa9.94□□□□□ -0.82
SYNE1-229ENST00000490866 NEUROD1Q13562 356 aa9.94□□□□□ -0.82
SYNE1-229ENST00000490866 PTPRTO14522 1441 aa9.93□□□□□ -0.82
SYNE1-229ENST00000490866 RPGRIP1LQ68CZ1 1315 aa9.93□□□□□ -0.82
SYNE1-229ENST00000490866 RASEFQ8IZ41 740 aa9.93□□□□□ -0.82
SYNE1-229ENST00000490866 TSPYL2Q9H2G4 693 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-229ENST00000490866 SLC24A1O60721 1099 aa9.92□□□□□ -0.82
SYNE1-229ENST00000490866 PPP1R15AO75807 674 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-229ENST00000490866 FAM212AQ96EL1 285 aa9.92□□□□□ -0.82
SYNE1-229ENST00000490866 CCDC61Q9Y6R9 512 aa9.91□□□□□ -0.82
SYNE1-229ENST00000490866 NEURL4Q96JN8 1562 aa9.91□□□□□ -0.82
SYNE1-229ENST00000490866 SIN3AQ96ST3 1273 aa9.9□□□□□ -0.82
SYNE1-229ENST00000490866 EFCAB6Q5THR3 1501 aa9.89□□□□□ -0.83
SYNE1-229ENST00000490866 IFNLR1Q8IU57 520 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-229ENST00000490866 ZMYM3Q14202 1370 aa9.88□□□□□ -0.83
SYNE1-229ENST00000490866 ABCC3O15438 1527 aa9.88□□□□□ -0.83
SYNE1-229ENST00000490866 SPOCK2Q92563 424 aa9.88□□□□□ -0.83
SYNE1-229ENST00000490866 MROH1Q8NDA8 1641 aa9.88□□□□□ -0.83
SYNE1-229ENST00000490866 TRPM2O94759 1503 aa9.87□□□□□ -0.83
SYNE1-229ENST00000490866 VGFO15240 615 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-229ENST00000490866 GSE1Q14687 1217 aa9.87□□□□□ -0.83
SYNE1-229ENST00000490866 NOS1P29475 1434 aa9.86□□□□□ -0.83
SYNE1-229ENST00000490866 NPATQ14207 1427 aa9.86□□□□□ -0.83
SYNE1-229ENST00000490866 L3MBTL2Q969R5 705 aa9.86□□□□□ -0.83
SYNE1-229ENST00000490866 PHF12Q96QT6 1004 aa9.86□□□□□ -0.83
SYNE1-229ENST00000490866 SGIP1Q9BQI5 828 aa9.86□□□□□ -0.83
SYNE1-229ENST00000490866 DCAF8Q5TAQ9 597 aa9.85□□□□□ -0.83
SYNE1-229ENST00000490866 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.85□□□□□ -0.83
SYNE1-229ENST00000490866 MROH2AA6NES4 1674 aa9.85□□□□□ -0.83
SYNE1-229ENST00000490866 E9PCH4 1651 aa9.85□□□□□ -0.83
SYNE1-229ENST00000490866 CAMSAP1Q5T5Y3 1602 aa9.85□□□□□ -0.83
SYNE1-229ENST00000490866 SPHKAPQ2M3C7 1700 aa9.85□□□□□ -0.83
SYNE1-229ENST00000490866 MLECQ14165 292 aa9.84□□□□□ -0.83
SYNE1-229ENST00000490866 DCAF11Q8TEB1 546 aa9.84□□□□□ -0.83
SYNE1-229ENST00000490866 KIF12Q96FN5 646 aa9.84□□□□□ -0.83
SYNE1-229ENST00000490866 PLA2R1Q13018 1463 aa9.84□□□□□ -0.83
SYNE1-229ENST00000490866 SETD1BQ9UPS6 1966 aaKnown RBP9.83□□□□□ -0.84
SYNE1-229ENST00000490866 KIF1BO60333 1816 aa9.82□□□□□ -0.84
SYNE1-229ENST00000490866 IDI1Q13907 227 aa9.82□□□□□ -0.84
SYNE1-229ENST00000490866 UHRF1BP1Q6BDS2 1440 aa9.82□□□□□ -0.84
SYNE1-229ENST00000490866 NLRP1Q9C000 1473 aa9.81□□□□□ -0.84
SYNE1-229ENST00000490866 RGL3Q3MIN7 710 aa9.81□□□□□ -0.84
SYNE1-229ENST00000490866 ZNF326Q5BKZ1 582 aaKnown RBP9.81□□□□□ -0.84
SYNE1-229ENST00000490866 THEMISQ8N1K5 641 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-229ENST00000490866 DCBLD2Q96PD2 775 aa9.81□□□□□ -0.84
SYNE1-229ENST00000490866 CEP152O94986 1710 aa9.81□□□□□ -0.84
SYNE1-229ENST00000490866 ZFYVE9O95405 1425 aa9.81□□□□□ -0.84
SYNE1-229ENST00000490866 SPATA31E1Q6ZUB1 1445 aa9.81□□□□□ -0.84
SYNE1-229ENST00000490866 SPATA31D1Q6ZQQ2 1576 aa9.8□□□□□ -0.84
SYNE1-229ENST00000490866 ERVK-7P63135 1459 aa9.79□□□□□ -0.84
SYNE1-229ENST00000490866 GALR2O43603 387 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-229ENST00000490866 CHGAP10645 457 aaKnown RBP9.79□□□□□ -0.84
SYNE1-229ENST00000490866 CHRM1P11229 460 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-229ENST00000490866 EIF4G2P78344 907 aaKnown RBP eCLIP9.79□□□□□ -0.84
SYNE1-229ENST00000490866 KDM5AP29375 1690 aaKnown RBP9.79□□□□□ -0.84
SYNE1-229ENST00000490866 CLTCQ00610 1675 aaKnown RBP9.79□□□□□ -0.84
SYNE1-229ENST00000490866 TNRQ92752 1358 aa9.78□□□□□ -0.84
SYNE1-229ENST00000490866 ZNF316A6NFI3 1004 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-229ENST00000490866 EID1Q9Y6B2 187 aa9.78□□□□□ -0.84
SYNE1-229ENST00000490866 PREX1Q8TCU6 1659 aa9.77□□□□□ -0.84
SYNE1-229ENST00000490866 FBXO31Q5XUX0 539 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-229ENST00000490866 KDM2AQ9Y2K7 1162 aa9.77□□□□□ -0.85
SYNE1-229ENST00000490866 PIK3C2BO00750 1634 aa9.77□□□□□ -0.85
SYNE1-229ENST00000490866 CFAP65Q6ZU64 1925 aaKnown RBP9.76□□□□□ -0.85
SYNE1-229ENST00000490866 MAP3K13O43283 966 aa9.76□□□□□ -0.85
SYNE1-229ENST00000490866 MS4A3Q96HJ5 214 aa9.76□□□□□ -0.85
SYNE1-229ENST00000490866 MYOM2P54296 1465 aa9.76□□□□□ -0.85
SYNE1-229ENST00000490866 FER1L4A9Z1Z3 1794 aa9.75□□□□□ -0.85
SYNE1-229ENST00000490866 CDCA8Q53HL2 280 aa9.75□□□□□ -0.85
SYNE1-229ENST00000490866 CLTCL1P53675 1640 aa9.74□□□□□ -0.85
SYNE1-229ENST00000490866 CARD11Q9BXL7 1154 aa9.74□□□□□ -0.85
SYNE1-229ENST00000490866 C14orf93Q9H972 538 aaKnown RBP9.74□□□□□ -0.85
SYNE1-229ENST00000490866 EIF3AQ14152 1382 aaKnown RBP9.74□□□□□ -0.85
SYNE1-229ENST00000490866 ADAMTSL3P82987 1691 aa9.74□□□□□ -0.85
SYNE1-229ENST00000490866 PRAG1Q86YV5 1406 aa9.73□□□□□ -0.85
SYNE1-229ENST00000490866 PCDHB13Q9Y5F0 798 aa9.73□□□□□ -0.85
SYNE1-229ENST00000490866 ROCK2O75116 1388 aaKnown RBP9.73□□□□□ -0.85
SYNE1-229ENST00000490866 KIAA1210Q9ULL0 1709 aa9.73□□□□□ -0.85
SYNE1-229ENST00000490866 ADGRB3O60242 1522 aa9.72□□□□□ -0.85
SYNE1-229ENST00000490866 SYNMO15061 1565 aa9.72□□□□□ -0.85
SYNE1-229ENST00000490866 GPRASP1Q5JY77 1395 aa9.72□□□□□ -0.85
SYNE1-229ENST00000490866 TMEM131LA2VDJ0 1609 aa9.71□□□□□ -0.85
SYNE1-229ENST00000490866 SIGLEC1Q9BZZ2 1709 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms