RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SMCPP49901 116 aaPredicted RBP8.4□□□□□ -1.06
DEPDC1-204ENST00000489862 PRSS12P56730 875 aa8.4□□□□□ -1.06
DEPDC1-204ENST00000489862 CERKQ8TCT0 537 aa8.4□□□□□ -1.06
DEPDC1-204ENST00000489862 SLC16A10Q8TF71 515 aa8.4□□□□□ -1.06
DEPDC1-204ENST00000489862 PCDHB3Q9Y5E6 796 aa8.4□□□□□ -1.06
DEPDC1-204ENST00000489862 MAP3K7O43318 606 aa8.4□□□□□ -1.07
DEPDC1-204ENST00000489862 EN1Q05925 392 aaPredicted RBP8.38□□□□□ -1.07
DEPDC1-204ENST00000489862 FOXC1Q12948 553 aa8.38□□□□□ -1.07
DEPDC1-204ENST00000489862 SENP2Q9HC62 589 aa8.38□□□□□ -1.07
DEPDC1-204ENST00000489862 LCE2CQ5TA81 110 aa8.37□□□□□ -1.07
DEPDC1-204ENST00000489862 PPEF1O14829 653 aaPredicted RBP8.36□□□□□ -1.07
DEPDC1-204ENST00000489862 CYP4X1Q8N118 509 aa8.35□□□□□ -1.07
DEPDC1-204ENST00000489862 S1PR4O95977 384 aa8.34□□□□□ -1.07
DEPDC1-204ENST00000489862 TSR1Q2NL82 804 aaKnown RBP8.34□□□□□ -1.07
DEPDC1-204ENST00000489862 DDX12PQ92771 950 aa8.34□□□□□ -1.07
DEPDC1-204ENST00000489862 PKD2L1Q9P0L9 805 aa8.34□□□□□ -1.07
DEPDC1-204ENST00000489862 NBR1Q14596 966 aa8.32□□□□□ -1.08
DEPDC1-204ENST00000489862 BLOC1S3Q6QNY0 202 aa8.32□□□□□ -1.08
DEPDC1-204ENST00000489862 FAM198AQ9UFP1 575 aa8.32□□□□□ -1.08
DEPDC1-204ENST00000489862 SWT1Q5T5J6 900 aaKnown RBP8.32□□□□□ -1.08
DEPDC1-204ENST00000489862 NUDT18Q6ZVK8 323 aa8.32□□□□□ -1.08
DEPDC1-204ENST00000489862 KIFC2Q96AC6 838 aa8.32□□□□□ -1.08
DEPDC1-204ENST00000489862 TRIM47Q96LD4 638 aa8.32□□□□□ -1.08
DEPDC1-204ENST00000489862 TOR4AQ9NXH8 423 aa8.32□□□□□ -1.08
DEPDC1-204ENST00000489862 SNRPBP14678 240 aaKnown RBP8.31□□□□□ -1.08
DEPDC1-204ENST00000489862 ATP13A2Q9NQ11 1180 aa8.3□□□□□ -1.08
DEPDC1-204ENST00000489862 TLL1O43897 1013 aa8.29□□□□□ -1.08
DEPDC1-204ENST00000489862 IRF7Q92985 503 aa8.29□□□□□ -1.08
DEPDC1-204ENST00000489862 DNAJC5Q9H3Z4 198 aa8.29□□□□□ -1.08
DEPDC1-204ENST00000489862 C3orf80F5H4A9 247 aa8.28□□□□□ -1.08
DEPDC1-204ENST00000489862 ADH1BP00325 375 aa8.27□□□□□ -1.09
DEPDC1-204ENST00000489862 LORP23490 312 aaPredicted RBP8.27□□□□□ -1.09
DEPDC1-204ENST00000489862 GMPRP36959 345 aa8.27□□□□□ -1.09
DEPDC1-204ENST00000489862 DPYSL4O14531 572 aa8.26□□□□□ -1.09
DEPDC1-204ENST00000489862 CHGAP10645 457 aaKnown RBP8.26□□□□□ -1.09
DEPDC1-204ENST00000489862 KCTD17Q8N5Z5 321 aa8.26□□□□□ -1.09
DEPDC1-204ENST00000489862 SLC6A16Q9GZN6 736 aa8.26□□□□□ -1.09
DEPDC1-204ENST00000489862 RBM27Q9P2N5 1060 aaKnown RBP8.26□□□□□ -1.09
DEPDC1-204ENST00000489862 RPIAP49247 311 aa8.25□□□□□ -1.09
DEPDC1-204ENST00000489862 CD2BP2O95400 341 aaKnown RBP8.25□□□□□ -1.09
DEPDC1-204ENST00000489862 TTC24A2A3L6 582 aaPredicted RBP8.24□□□□□ -1.09
DEPDC1-204ENST00000489862 KCNMA1Q12791 1236 aa8.24□□□□□ -1.09
DEPDC1-204ENST00000489862 NPAS3Q8IXF0 933 aa8.24□□□□□ -1.09
DEPDC1-204ENST00000489862 NXF1Q9UBU9 619 aaKnown RBP8.24□□□□□ -1.09
DEPDC1-204ENST00000489862 NKX1-1Q15270 411 aaPredicted RBP8.23□□□□□ -1.09
DEPDC1-204ENST00000489862 PLA2G2CQ5R387 149 aa8.23□□□□□ -1.09
DEPDC1-204ENST00000489862 KMT5BQ4FZB7 885 aa8.22□□□□□ -1.09
DEPDC1-204ENST00000489862 NR1I2O75469 434 aa8.21□□□□□ -1.1
DEPDC1-204ENST00000489862 CAMK2BQ13554 666 aa8.21□□□□□ -1.1
DEPDC1-204ENST00000489862 TMEM151AQ8N4L1 468 aa8.18□□□□□ -1.1
DEPDC1-204ENST00000489862 ACTN4O43707 911 aaKnown RBP8.18□□□□□ -1.1
DEPDC1-204ENST00000489862 DCAF8L2P0C7V8 631 aa8.18□□□□□ -1.1
DEPDC1-204ENST00000489862 SPDYE16A6NNV3 312 aaPredicted RBP8.14□□□□□ -1.11
DEPDC1-204ENST00000489862 SNIP1Q8TAD8 396 aaKnown RBP8.14□□□□□ -1.11
DEPDC1-204ENST00000489862 XP32Q5T750 250 aa8.13□□□□□ -1.11
DEPDC1-204ENST00000489862 GDF11O95390 407 aa8.12□□□□□ -1.11
DEPDC1-204ENST00000489862 SMPD1P17405 629 aa8.12□□□□□ -1.11
DEPDC1-204ENST00000489862 RTN4Q9NQC3 1192 aaKnown RBP8.12□□□□□ -1.11
DEPDC1-204ENST00000489862 H3BM21 787 aa8.11□□□□□ -1.11
DEPDC1-204ENST00000489862 PDIA6Q15084 440 aa8.11□□□□□ -1.11
DEPDC1-204ENST00000489862 RNF225M0QZC1 329 aaPredicted RBP8.11□□□□□ -1.11
DEPDC1-204ENST00000489862 AMER1Q5JTC6 1135 aaPredicted RBP8.11□□□□□ -1.11
DEPDC1-204ENST00000489862 TTC13Q8NBP0 860 aa8.11□□□□□ -1.11
DEPDC1-204ENST00000489862 ZBTB24O43167 697 aaPredicted RBP8.09□□□□□ -1.11
DEPDC1-204ENST00000489862 SPSB2Q99619 263 aa8.08□□□□□ -1.12
DEPDC1-204ENST00000489862 IGHA1P01876 353 aa8.07□□□□□ -1.12
DEPDC1-204ENST00000489862 RASSF7Q02833 373 aa8.07□□□□□ -1.12
DEPDC1-204ENST00000489862 PADI6Q6TGC4 694 aa8.07□□□□□ -1.12
DEPDC1-204ENST00000489862 EYA1Q99502 592 aa8.07□□□□□ -1.12
DEPDC1-204ENST00000489862 WNT7AO00755 349 aa8.07□□□□□ -1.12
DEPDC1-204ENST00000489862 CFHP08603 1231 aa8.07□□□□□ -1.12
DEPDC1-204ENST00000489862 GSK3AP49840 483 aa8.07□□□□□ -1.12
DEPDC1-204ENST00000489862 GTPBP6O43824 516 aaPredicted RBP8.06□□□□□ -1.12
DEPDC1-204ENST00000489862 DNAJB2P25686 324 aa8.06□□□□□ -1.12
DEPDC1-204ENST00000489862 KRTAP4-8Q9BYQ9 185 aa8.06□□□□□ -1.12
DEPDC1-204ENST00000489862 FCF1Q9Y324 198 aaKnown RBP8.06□□□□□ -1.12
DEPDC1-204ENST00000489862 SCUBE3Q8IX30 993 aa8.05□□□□□ -1.12
DEPDC1-204ENST00000489862 CDHR5Q9HBB8 845 aa8.05□□□□□ -1.12
DEPDC1-204ENST00000489862 GRXCR2A6NFK2 248 aa8.04□□□□□ -1.12
DEPDC1-204ENST00000489862 VEGFBP49765 207 aa8.04□□□□□ -1.12
DEPDC1-204ENST00000489862 ERBB4Q15303 1308 aa8.04□□□□□ -1.12
DEPDC1-204ENST00000489862 PRIM1P49642 420 aaKnown RBP8.03□□□□□ -1.12
DEPDC1-204ENST00000489862 HPS1Q92902 700 aa8.02□□□□□ -1.13
DEPDC1-204ENST00000489862 J3QL48 77 aa8.01□□□□□ -1.13
DEPDC1-204ENST00000489862 REPIN1Q9BWE0 567 aaKnown RBP8.01□□□□□ -1.13
DEPDC1-204ENST00000489862 CADPS2Q86UW7 1296 aa7.99□□□□□ -1.13
DEPDC1-204ENST00000489862 TMEM134Q9H6X4 195 aa7.99□□□□□ -1.13
DEPDC1-204ENST00000489862 GPAT2Q6NUI2 795 aa7.98□□□□□ -1.13
DEPDC1-204ENST00000489862 FOXK2Q01167 660 aa7.97□□□□□ -1.13
DEPDC1-204ENST00000489862 RBM46Q8TBY0 533 aaKnown RBP7.97□□□□□ -1.13
DEPDC1-204ENST00000489862 MRGPRX2Q96LB1 330 aa7.97□□□□□ -1.13
DEPDC1-204ENST00000489862 DNMT3AQ9Y6K1 912 aaPredicted RBP7.96□□□□□ -1.13
DEPDC1-204ENST00000489862 OSBPP22059 807 aa7.96□□□□□ -1.14
DEPDC1-204ENST00000489862 RSPH4AQ5TD94 716 aa7.96□□□□□ -1.14
DEPDC1-204ENST00000489862 BBXQ8WY36 941 aaPredicted RBP7.96□□□□□ -1.14
DEPDC1-204ENST00000489862 PSMG3-AS1Q96PY0 264 aa7.95□□□□□ -1.14
DEPDC1-204ENST00000489862 VSIG8P0DPA2 414 aa7.94□□□□□ -1.14
DEPDC1-204ENST00000489862 NPDC1Q9NQX5 325 aaPredicted RBP7.93□□□□□ -1.14
DEPDC1-204ENST00000489862 TRIM32Q13049 653 aa7.92□□□□□ -1.14
DEPDC1-204ENST00000489862 PUS10Q3MIT2 529 aaKnown RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms