RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 KDM5CP41229 1560 aa7.88□□□□□ -1.15
VPS13D-209ENST00000487188 RALGAPBQ86X10 1494 aa7.88□□□□□ -1.15
VPS13D-209ENST00000487188 TMF1P82094 1093 aa7.87□□□□□ -1.15
VPS13D-209ENST00000487188 CALD1Q05682 793 aaKnown RBP7.87□□□□□ -1.15
VPS13D-209ENST00000487188 CFDP1Q9UEE9 299 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-209ENST00000487188 ZNF644Q9H582 1327 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-209ENST00000487188 BCAR3O75815 825 aa7.87□□□□□ -1.15
VPS13D-209ENST00000487188 TNNT2P45379 298 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-209ENST00000487188 CENPJQ9HC77 1338 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-209ENST00000487188 ZMYM4Q5VZL5 1548 aa7.87□□□□□ -1.15
VPS13D-209ENST00000487188 PTMSP20962 102 aa7.87□□□□□ -1.15
VPS13D-209ENST00000487188 R3HCC1Q9Y3T6 440 aaKnown RBP7.87□□□□□ -1.15
VPS13D-209ENST00000487188 NUP155O75694 1391 aa7.87□□□□□ -1.15
VPS13D-209ENST00000487188 BLMP54132 1417 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-209ENST00000487188 IGHDP01880 384 aa7.86□□□□□ -1.15
VPS13D-209ENST00000487188 NCLP19338 710 aaKnown RBP7.86□□□□□ -1.15
VPS13D-209ENST00000487188 TBC1D32Q96NH3 1257 aa7.86□□□□□ -1.15
VPS13D-209ENST00000487188 PANK1Q8TE04 598 aa7.86□□□□□ -1.15
VPS13D-209ENST00000487188 CCDC173Q0VFZ6 552 aa7.86□□□□□ -1.15
VPS13D-209ENST00000487188 C22orf23Q9BZE7 217 aa7.86□□□□□ -1.15
VPS13D-209ENST00000487188 SKOR2Q2VWA4 1001 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-209ENST00000487188 RWDD1Q9H446 243 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-209ENST00000487188 ANTXR1Q9H6X2 564 aa7.86□□□□□ -1.15
VPS13D-209ENST00000487188 USP19O94966 1318 aa7.86□□□□□ -1.15
VPS13D-209ENST00000487188 NASPP49321 788 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-209ENST00000487188 E9PSI1 815 aa7.85□□□□□ -1.15
VPS13D-209ENST00000487188 ABCC5O15440 1437 aa7.85□□□□□ -1.15
VPS13D-209ENST00000487188 ZSCAN30Q86W11 494 aa7.85□□□□□ -1.15
VPS13D-209ENST00000487188 ERBB4Q15303 1308 aa7.84□□□□□ -1.15
VPS13D-209ENST00000487188 APAF1O14727 1248 aa7.84□□□□□ -1.15
VPS13D-209ENST00000487188 SLFN5Q08AF3 891 aa7.84□□□□□ -1.15
VPS13D-209ENST00000487188 PDZRN3Q9UPQ7 1066 aa7.84□□□□□ -1.15
VPS13D-209ENST00000487188 SAMD9Q5K651 1589 aa7.84□□□□□ -1.15
VPS13D-209ENST00000487188 UHRF1BP1LA0JNW5 1464 aa7.84□□□□□ -1.15
VPS13D-209ENST00000487188 ANKRD30AQ9BXX3 1397 aa7.84□□□□□ -1.15
VPS13D-209ENST00000487188 PLEKHH1Q9ULM0 1364 aa7.84□□□□□ -1.15
VPS13D-209ENST00000487188 FOXD4L1Q9NU39 408 aa7.84□□□□□ -1.16
VPS13D-209ENST00000487188 CDK13Q14004 1512 aaKnown RBP7.84□□□□□ -1.16
VPS13D-209ENST00000487188 MBD5Q9P267 1494 aa7.84□□□□□ -1.16
VPS13D-209ENST00000487188 PDE3AQ14432 1141 aa7.83□□□□□ -1.16
VPS13D-209ENST00000487188 NEUROD2Q15784 382 aa7.83□□□□□ -1.16
VPS13D-209ENST00000487188 MAGI3Q5TCQ9 1506 aa7.83□□□□□ -1.16
VPS13D-209ENST00000487188 PZPP20742 1482 aa7.83□□□□□ -1.16
VPS13D-209ENST00000487188 DNTTIP2Q5QJE6 756 aaKnown RBP7.83□□□□□ -1.16
VPS13D-209ENST00000487188 FTSJ3Q8IY81 847 aaKnown RBP7.83□□□□□ -1.16
VPS13D-209ENST00000487188 INSRP06213 1382 aa7.83□□□□□ -1.16
VPS13D-209ENST00000487188 EPRSP07814 1512 aaKnown RBP7.83□□□□□ -1.16
VPS13D-209ENST00000487188 UQCRHLA0A096LP55 91 aa7.82□□□□□ -1.16
VPS13D-209ENST00000487188 PTMAP06454 111 aaKnown RBP7.82□□□□□ -1.16
VPS13D-209ENST00000487188 UQCRHP07919 91 aa7.82□□□□□ -1.16
VPS13D-209ENST00000487188 PPP2R1AP30153 589 aa7.82□□□□□ -1.16
VPS13D-209ENST00000487188 NKTRP30414 1462 aaKnown RBP7.82□□□□□ -1.16
VPS13D-209ENST00000487188 MTERF4Q7Z6M4 381 aaKnown RBP7.82□□□□□ -1.16
VPS13D-209ENST00000487188 DDX49Q9Y6V7 483 aaKnown RBP7.82□□□□□ -1.16
VPS13D-209ENST00000487188 DIP2BQ9P265 1576 aa7.82□□□□□ -1.16
VPS13D-209ENST00000487188 NINLQ9Y2I6 1382 aa7.82□□□□□ -1.16
VPS13D-209ENST00000487188 TSPY4P0CV99 314 aa7.81□□□□□ -1.16
VPS13D-209ENST00000487188 TSPY10P0CW01 314 aa7.81□□□□□ -1.16
VPS13D-209ENST00000487188 PRDM10Q9NQV6 1147 aa7.81□□□□□ -1.16
VPS13D-209ENST00000487188 CARMIL2Q6F5E8 1435 aa7.81□□□□□ -1.16
VPS13D-209ENST00000487188 ABCC2Q92887 1545 aa7.81□□□□□ -1.16
VPS13D-209ENST00000487188 ABCA8O94911 1581 aa7.81□□□□□ -1.16
VPS13D-209ENST00000487188 OFD1O75665 1012 aa7.81□□□□□ -1.16
VPS13D-209ENST00000487188 UHRF1BP1Q6BDS2 1440 aa7.81□□□□□ -1.16
VPS13D-209ENST00000487188 ZHX1Q9UKY1 873 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-209ENST00000487188 BCL2L13Q9BXK5 485 aa7.8□□□□□ -1.16
VPS13D-209ENST00000487188 PTPRGP23470 1445 aa7.8□□□□□ -1.16
VPS13D-209ENST00000487188 ZBTB7CA1YPR0 619 aa7.8□□□□□ -1.16
VPS13D-209ENST00000487188 PER1O15534 1290 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-209ENST00000487188 NBPF1Q3BBV0 1214 aa7.8□□□□□ -1.16
VPS13D-209ENST00000487188 ANKRD50Q9ULJ7 1429 aa7.8□□□□□ -1.16
VPS13D-209ENST00000487188 TNPO1Q92973 898 aaKnown RBP7.8□□□□□ -1.16
VPS13D-209ENST00000487188 LRRIQ1Q96JM4 1722 aa7.8□□□□□ -1.16
VPS13D-209ENST00000487188 ABCC10Q5T3U5 1492 aa7.8□□□□□ -1.16
VPS13D-209ENST00000487188 CSPP1Q1MSJ5 1256 aa7.79□□□□□ -1.16
VPS13D-209ENST00000487188 CDCA8Q53HL2 280 aa7.79□□□□□ -1.16
VPS13D-209ENST00000487188 DNMT1P26358 1616 aaKnown RBP7.79□□□□□ -1.16
VPS13D-209ENST00000487188 ZCCHC11Q5TAX3 1644 aaKnown RBP7.79□□□□□ -1.16
VPS13D-209ENST00000487188 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.79□□□□□ -1.166e-8■■■■□ 25.9
VPS13D-209ENST00000487188 ERBINQ96RT1 1412 aa7.79□□□□□ -1.16
VPS13D-209ENST00000487188 ARHGEF12Q9NZN5 1544 aa7.79□□□□□ -1.16
VPS13D-209ENST00000487188 CIZ1Q9ULV3 898 aaPredicted RBP7.78□□□□□ -1.16
VPS13D-209ENST00000487188 PPRC1Q5VV67 1664 aaKnown RBP7.78□□□□□ -1.16
VPS13D-209ENST00000487188 DISP3Q9P2K9 1392 aa7.78□□□□□ -1.16
VPS13D-209ENST00000487188 AAMPQ13685 434 aa7.78□□□□□ -1.16
VPS13D-209ENST00000487188 CCDC144AA2RUR9 1427 aa7.78□□□□□ -1.16
VPS13D-209ENST00000487188 XPCQ01831 940 aaPredicted RBP7.78□□□□□ -1.16
VPS13D-209ENST00000487188 GAS2L3Q86XJ1 694 aa7.78□□□□□ -1.16
VPS13D-209ENST00000487188 SMAP1Q8IYB5 467 aaPredicted RBP7.78□□□□□ -1.16
VPS13D-209ENST00000487188 GLI2P10070 1586 aa7.77□□□□□ -1.17
VPS13D-209ENST00000487188 PLB1Q6P1J6 1458 aa7.77□□□□□ -1.17
VPS13D-209ENST00000487188 SPINK5Q9NQ38 1064 aaPredicted RBP7.77□□□□□ -1.17
VPS13D-209ENST00000487188 TERF1P54274 439 aa7.76□□□□□ -1.17
VPS13D-209ENST00000487188 RRP7AQ9Y3A4 280 aaKnown RBP7.76□□□□□ -1.17
VPS13D-209ENST00000487188 COL17A1Q9UMD9 1497 aaPredicted RBP7.76□□□□□ -1.17
VPS13D-209ENST00000487188 VIRMAQ69YN4 1812 aaKnown RBP7.76□□□□□ -1.17
VPS13D-209ENST00000487188 PCDHB15Q9Y5E8 787 aa7.76□□□□□ -1.17
VPS13D-209ENST00000487188 DYNC1I1O14576 645 aa7.76□□□□□ -1.17
VPS13D-209ENST00000487188 RIPK4P57078 832 aa7.76□□□□□ -1.17
VPS13D-209ENST00000487188 CAVIN1Q6NZI2 390 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms