RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 FBXO41Q8TF61 875 aa7.96□□□□□ -1.14
CCDC39-205ENST00000485055 UGGT1Q9NYU2 1555 aa7.96□□□□□ -1.14
CCDC39-205ENST00000485055 EFCAB6Q5THR3 1501 aa7.95□□□□□ -1.14
CCDC39-205ENST00000485055 HSP90B1P14625 803 aaKnown RBP7.95□□□□□ -1.14
CCDC39-205ENST00000485055 IQGAP1P46940 1657 aa7.94□□□□□ -1.14
CCDC39-205ENST00000485055 ZMYND15Q9H091 742 aa7.94□□□□□ -1.14
CCDC39-205ENST00000485055 NOS1P29475 1434 aa7.94□□□□□ -1.14
CCDC39-205ENST00000485055 UBE2Q2Q8WVN8 375 aa7.93□□□□□ -1.14
CCDC39-205ENST00000485055 NWD1Q149M9 1564 aa7.93□□□□□ -1.14
CCDC39-205ENST00000485055 ZNF644Q9H582 1327 aaPredicted RBP7.93□□□□□ -1.14
CCDC39-205ENST00000485055 ATP1B4Q9UN42 357 aaPredicted RBP7.92□□□□□ -1.14
CCDC39-205ENST00000485055 KANK4Q5T7N3 995 aaPredicted RBP7.92□□□□□ -1.14
CCDC39-205ENST00000485055 TNRQ92752 1358 aa7.92□□□□□ -1.14
CCDC39-205ENST00000485055 RGL2O15211 777 aa7.91□□□□□ -1.14
CCDC39-205ENST00000485055 RSPH6AQ9H0K4 717 aa7.91□□□□□ -1.14
CCDC39-205ENST00000485055 RRBP1Q9P2E9 1410 aaKnown RBP7.91□□□□□ -1.14
CCDC39-205ENST00000485055 SLC4A2P04920 1241 aa7.91□□□□□ -1.14
CCDC39-205ENST00000485055 NEUROD2Q15784 382 aa7.91□□□□□ -1.14
CCDC39-205ENST00000485055 ANKRD30AQ9BXX3 1397 aa7.9□□□□□ -1.14
CCDC39-205ENST00000485055 TSPY4P0CV99 314 aa7.9□□□□□ -1.14
CCDC39-205ENST00000485055 TSPY10P0CW01 314 aa7.9□□□□□ -1.14
CCDC39-205ENST00000485055 ATXN8OSP0DMR3 200 aa7.9□□□□□ -1.14
CCDC39-205ENST00000485055 FOXD1Q16676 465 aa7.9□□□□□ -1.14
CCDC39-205ENST00000485055 DIP2AQ14689 1571 aa7.9□□□□□ -1.14
CCDC39-205ENST00000485055 ADGRB3O60242 1522 aa7.9□□□□□ -1.14
CCDC39-205ENST00000485055 ECM2O94769 699 aaPredicted RBP7.9□□□□□ -1.15
CCDC39-205ENST00000485055 XIRP1Q702N8 1843 aaKnown RBP7.89□□□□□ -1.15
CCDC39-205ENST00000485055 STRCP1A6NGW2 1772 aa7.89□□□□□ -1.15
CCDC39-205ENST00000485055 E9PCH4 1651 aa7.89□□□□□ -1.15
CCDC39-205ENST00000485055 TMEM131LA2VDJ0 1609 aa7.88□□□□□ -1.15
CCDC39-205ENST00000485055 KIF15Q9NS87 1388 aa7.88□□□□□ -1.15
CCDC39-205ENST00000485055 ACIN1Q9UKV3 1341 aaKnown RBP7.88□□□□□ -1.15
CCDC39-205ENST00000485055 BRD2P25440 801 aaKnown RBP7.88□□□□□ -1.15
CCDC39-205ENST00000485055 CERKQ8TCT0 537 aa7.88□□□□□ -1.15
CCDC39-205ENST00000485055 PRAG1Q86YV5 1406 aa7.87□□□□□ -1.15
CCDC39-205ENST00000485055 ALKQ9UM73 1620 aa7.87□□□□□ -1.15
CCDC39-205ENST00000485055 KCTD17Q8N5Z5 321 aa7.87□□□□□ -1.15
CCDC39-205ENST00000485055 NCOA3Q9Y6Q9 1424 aa7.86□□□□□ -1.15
CCDC39-205ENST00000485055 CHD2O14647 1828 aaKnown RBP7.86□□□□□ -1.15
CCDC39-205ENST00000485055 RAD21O60216 631 aa7.86□□□□□ -1.15
CCDC39-205ENST00000485055 HMGB1P09429 215 aaKnown RBP7.86□□□□□ -1.15
CCDC39-205ENST00000485055 ILDR1Q86SU0 546 aaPredicted RBP7.86□□□□□ -1.15
CCDC39-205ENST00000485055 ESF1Q9H501 851 aaKnown RBP7.86□□□□□ -1.15
CCDC39-205ENST00000485055 SPHKAPQ2M3C7 1700 aa7.86□□□□□ -1.15
CCDC39-205ENST00000485055 ZNF777Q9ULD5 760 aaPredicted RBP7.86□□□□□ -1.15
CCDC39-205ENST00000485055 PUS7Q96PZ0 661 aaKnown RBP7.85□□□□□ -1.15
CCDC39-205ENST00000485055 KANK1Q14678 1352 aa7.85□□□□□ -1.15
CCDC39-205ENST00000485055 CEBPAP49715 358 aaPredicted RBP7.85□□□□□ -1.15
CCDC39-205ENST00000485055 SCAF11Q99590 1463 aaKnown RBP7.84□□□□□ -1.15
CCDC39-205ENST00000485055 NPHP4O75161 1426 aaPredicted RBP7.84□□□□□ -1.15
CCDC39-205ENST00000485055 ZFYVE9O95405 1425 aa7.84□□□□□ -1.15
CCDC39-205ENST00000485055 MAPK8IP2Q13387 824 aaPredicted RBP7.84□□□□□ -1.15
CCDC39-205ENST00000485055 KIF3BO15066 747 aa7.84□□□□□ -1.15
CCDC39-205ENST00000485055 THEMISQ8N1K5 641 aaPredicted RBP7.84□□□□□ -1.15
CCDC39-205ENST00000485055 NKTRP30414 1462 aaKnown RBP7.84□□□□□ -1.16
CCDC39-205ENST00000485055 ANKRD50Q9ULJ7 1429 aa7.83□□□□□ -1.16
CCDC39-205ENST00000485055 CHGAP10645 457 aaKnown RBP7.83□□□□□ -1.16
CCDC39-205ENST00000485055 FOXD4L5Q5VV16 416 aaPredicted RBP7.83□□□□□ -1.16
CCDC39-205ENST00000485055 FOXD4L4Q8WXT5 416 aaPredicted RBP7.83□□□□□ -1.16
CCDC39-205ENST00000485055 MTMR7Q9Y216 660 aa7.83□□□□□ -1.16
CCDC39-205ENST00000485055 MYO5BQ9ULV0 1848 aa7.83□□□□□ -1.16
CCDC39-205ENST00000485055 BCL11AQ9H165 835 aa7.83□□□□□ -1.16
CCDC39-205ENST00000485055 WASHC2CQ9Y4E1 1318 aa7.83□□□□□ -1.16
CCDC39-205ENST00000485055 SETBP1Q9Y6X0 1596 aa7.83□□□□□ -1.16
CCDC39-205ENST00000485055 LAMC1P11047 1609 aa7.83□□□□□ -1.16
CCDC39-205ENST00000485055 PDE4CQ08493 712 aa7.82□□□□□ -1.16
CCDC39-205ENST00000485055 MLECQ14165 292 aa7.82□□□□□ -1.16
CCDC39-205ENST00000485055 POLR3GLQ9BT43 218 aa7.82□□□□□ -1.16
CCDC39-205ENST00000485055 TRPM2O94759 1503 aa7.82□□□□□ -1.16
CCDC39-205ENST00000485055 APBB1O00213 710 aa7.81□□□□□ -1.16
CCDC39-205ENST00000485055 PIK3R4Q99570 1358 aa7.81□□□□□ -1.16
CCDC39-205ENST00000485055 SETD1AO15047 1707 aaKnown RBP7.81□□□□□ -1.16
CCDC39-205ENST00000485055 LMOD2Q6P5Q4 547 aa7.81□□□□□ -1.16
CCDC39-205ENST00000485055 RGS22Q8NE09 1264 aa7.81□□□□□ -1.16
CCDC39-205ENST00000485055 SLC52A1Q9NWF4 448 aa7.81□□□□□ -1.16
CCDC39-205ENST00000485055 RBM25P49756 843 aaKnown RBP7.81□□□□□ -1.16
CCDC39-205ENST00000485055 HSPA2P54652 639 aa7.81□□□□□ -1.16
CCDC39-205ENST00000485055 ATF5Q9Y2D1 282 aaPredicted RBP7.81□□□□□ -1.16
CCDC39-205ENST00000485055 TMEM2Q9UHN6 1383 aa7.81□□□□□ -1.16
CCDC39-205ENST00000485055 XRN1Q8IZH2 1706 aaKnown RBP7.8□□□□□ -1.16
CCDC39-205ENST00000485055 IFT172Q9UG01 1749 aa7.8□□□□□ -1.16
CCDC39-205ENST00000485055 LRRC7Q96NW7 1537 aa7.8□□□□□ -1.16
CCDC39-205ENST00000485055 NRXN3Q9Y4C0 1643 aa7.79□□□□□ -1.16
CCDC39-205ENST00000485055 KIF1BO60333 1816 aa7.79□□□□□ -1.16
CCDC39-205ENST00000485055 GGT6Q6P531 493 aa7.79□□□□□ -1.16
CCDC39-205ENST00000485055 ANKLE2Q86XL3 938 aa7.79□□□□□ -1.16
CCDC39-205ENST00000485055 HFM1A2PYH4 1435 aa7.79□□□□□ -1.16
CCDC39-205ENST00000485055 PLEKHG1Q9ULL1 1385 aa7.79□□□□□ -1.16
CCDC39-205ENST00000485055 MYT1LQ9UL68 1186 aa7.78□□□□□ -1.16
CCDC39-205ENST00000485055 PPLO60437 1756 aa7.77□□□□□ -1.17
CCDC39-205ENST00000485055 PIAS4Q8N2W9 510 aaPredicted RBP7.77□□□□□ -1.17
CCDC39-205ENST00000485055 FBXO31Q5XUX0 539 aaPredicted RBP7.77□□□□□ -1.17
CCDC39-205ENST00000485055 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.77□□□□□ -1.17
CCDC39-205ENST00000485055 KNDC1Q76NI1 1749 aa7.76□□□□□ -1.17
CCDC39-205ENST00000485055 NAIPQ13075 1403 aa7.76□□□□□ -1.17
CCDC39-205ENST00000485055 NCKAP5LQ9HCH0 1330 aa7.76□□□□□ -1.17
CCDC39-205ENST00000485055 SLC24A3Q9HC58 644 aa7.76□□□□□ -1.17
CCDC39-205ENST00000485055 CLTCL1P53675 1640 aa7.75□□□□□ -1.17
CCDC39-205ENST00000485055 MYCNP04198 464 aaPredicted RBP7.75□□□□□ -1.17
CCDC39-205ENST00000485055 NEXMIFQ5QGS0 1516 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms