RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SLC4A3P48751 1232 aa7.48□□□□□ -1.21
VPS41-212ENST00000482217 EYA1Q99502 592 aa7.48□□□□□ -1.21
VPS41-212ENST00000482217 TSR3Q9UJK0 312 aaKnown RBP7.48□□□□□ -1.21
VPS41-212ENST00000482217 C3orf80F5H4A9 247 aa7.47□□□□□ -1.21
VPS41-212ENST00000482217 OATP04181 439 aa7.47□□□□□ -1.21
VPS41-212ENST00000482217 BCAMP50895 628 aa7.47□□□□□ -1.21
VPS41-212ENST00000482217 AMHR2Q16671 573 aa7.47□□□□□ -1.21
VPS41-212ENST00000482217 ADGRG1Q9Y653 693 aa7.47□□□□□ -1.21
VPS41-212ENST00000482217 DNAJB2P25686 324 aa7.46□□□□□ -1.22
VPS41-212ENST00000482217 SAMD7Q7Z3H4 446 aa7.46□□□□□ -1.22
VPS41-212ENST00000482217 SLF2Q8IX21 1173 aa7.45□□□□□ -1.22
VPS41-212ENST00000482217 PPP4CP60510 307 aa7.44□□□□□ -1.22
VPS41-212ENST00000482217 KDM4CQ9H3R0 1056 aa7.44□□□□□ -1.22
VPS41-212ENST00000482217 HPS5Q9UPZ3 1129 aa7.44□□□□□ -1.22
VPS41-212ENST00000482217 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.43□□□□□ -1.22
VPS41-212ENST00000482217 GPBP1L1Q9HC44 474 aaPredicted RBP7.43□□□□□ -1.22
VPS41-212ENST00000482217 WBP1LQ9NX94 342 aa7.43□□□□□ -1.22
VPS41-212ENST00000482217 PLA2G2EQ9NZK7 142 aa7.43□□□□□ -1.22
VPS41-212ENST00000482217 IFFO2Q5TF58 517 aa7.42□□□□□ -1.22
VPS41-212ENST00000482217 PXYLP1Q8TE99 480 aa7.42□□□□□ -1.22
VPS41-212ENST00000482217 TMEM134Q9H6X4 195 aa7.42□□□□□ -1.22
VPS41-212ENST00000482217 RCCD1A6NED2 376 aa7.41□□□□□ -1.22
VPS41-212ENST00000482217 SWT1Q5T5J6 900 aaKnown RBP7.41□□□□□ -1.22
VPS41-212ENST00000482217 METTL3Q86U44 580 aaKnown RBP7.41□□□□□ -1.22
VPS41-212ENST00000482217 PARP9Q8IXQ6 854 aa7.41□□□□□ -1.22
VPS41-212ENST00000482217 TTLL12Q14166 644 aaPredicted RBP7.4□□□□□ -1.22
VPS41-212ENST00000482217 HOMEZQ8IX15 550 aa7.4□□□□□ -1.22
VPS41-212ENST00000482217 PRR14Q9BWN1 585 aa7.4□□□□□ -1.22
VPS41-212ENST00000482217 RNF40O75150 1001 aa7.39□□□□□ -1.23
VPS41-212ENST00000482217 ITGBL1O95965 494 aaPredicted RBP7.39□□□□□ -1.23
VPS41-212ENST00000482217 CLCN1P35523 988 aa7.39□□□□□ -1.23
VPS41-212ENST00000482217 FAM161AQ3B820 660 aa7.38□□□□□ -1.23
VPS41-212ENST00000482217 DDRGK1Q96HY6 314 aa7.38□□□□□ -1.23
VPS41-212ENST00000482217 TMUB1Q9BVT8 246 aa7.38□□□□□ -1.23
VPS41-212ENST00000482217 GPCPD1Q9NPB8 672 aa7.38□□□□□ -1.23
VPS41-212ENST00000482217 RSPH4AQ5TD94 716 aa7.37□□□□□ -1.23
VPS41-212ENST00000482217 PHOX2BQ99453 314 aa7.37□□□□□ -1.23
VPS41-212ENST00000482217 GIGYF2Q6Y7W6 1299 aaKnown RBP7.36□□□□□ -1.23
VPS41-212ENST00000482217 MDM2Q00987 491 aaPredicted RBP7.35□□□□□ -1.23
VPS41-212ENST00000482217 IL27Q8NEV9 243 aa7.35□□□□□ -1.23
VPS41-212ENST00000482217 GTF3C3Q9Y5Q9 886 aa7.35□□□□□ -1.23
VPS41-212ENST00000482217 KCNC4Q03721 635 aa7.34□□□□□ -1.23
VPS41-212ENST00000482217 REPIN1Q9BWE0 567 aaKnown RBP7.34□□□□□ -1.23
VPS41-212ENST00000482217 FAM117AQ9C073 453 aa7.34□□□□□ -1.23
VPS41-212ENST00000482217 KMT5BQ4FZB7 885 aa7.33□□□□□ -1.24
VPS41-212ENST00000482217 SULF1Q8IWU6 871 aa7.33□□□□□ -1.24
VPS41-212ENST00000482217 MS4A1P11836 297 aa7.32□□□□□ -1.24
VPS41-212ENST00000482217 APLP1P51693 650 aa7.32□□□□□ -1.24
VPS41-212ENST00000482217 IL21Q9HBE4 155 aa7.32□□□□□ -1.24
VPS41-212ENST00000482217 PLEKHG3A1L390 1219 aa7.31□□□□□ -1.24
VPS41-212ENST00000482217 SSTR3P32745 418 aaPredicted RBP7.31□□□□□ -1.24
VPS41-212ENST00000482217 TJAP1Q5JTD0 557 aa7.31□□□□□ -1.24
VPS41-212ENST00000482217 FAM217BQ9NTX9 383 aaPredicted RBP7.31□□□□□ -1.24
VPS41-212ENST00000482217 ACTN4O43707 911 aaKnown RBP7.3□□□□□ -1.24
VPS41-212ENST00000482217 CFHP08603 1231 aa7.3□□□□□ -1.24
VPS41-212ENST00000482217 MTRQ99707 1265 aa7.3□□□□□ -1.24
VPS41-212ENST00000482217 GOPCQ9HD26 462 aa7.3□□□□□ -1.24
VPS41-212ENST00000482217 A0A0G2JS52 829 aa7.29□□□□□ -1.24
VPS41-212ENST00000482217 RGS20O76081 388 aa7.29□□□□□ -1.24
VPS41-212ENST00000482217 SLC10A3P09131 477 aa7.29□□□□□ -1.24
VPS41-212ENST00000482217 ERICH6Q7L0X2 663 aa7.29□□□□□ -1.24
VPS41-212ENST00000482217 NLRP7Q8WX94 980 aa7.29□□□□□ -1.24
VPS41-212ENST00000482217 PCDHB3Q9Y5E6 796 aa7.29□□□□□ -1.24
VPS41-212ENST00000482217 RANGAP1P46060 587 aaPredicted RBP7.28□□□□□ -1.24
VPS41-212ENST00000482217 RDH13Q8NBN7 331 aa7.27□□□□□ -1.25
VPS41-212ENST00000482217 BEGAINQ9BUH8 593 aa7.27□□□□□ -1.25
VPS41-212ENST00000482217 RSPH6AQ9H0K4 717 aa7.27□□□□□ -1.25
VPS41-212ENST00000482217 DDX11L8A8MPP1 907 aa7.26□□□□□ -1.25
VPS41-212ENST00000482217 DIXDC1Q155Q3 683 aa7.25□□□□□ -1.25
VPS41-212ENST00000482217 ZPR1O75312 459 aa7.24□□□□□ -1.25
VPS41-212ENST00000482217 NR1I2O75469 434 aa7.24□□□□□ -1.25
VPS41-212ENST00000482217 COPS2P61201 443 aa7.24□□□□□ -1.25
VPS41-212ENST00000482217 SH3D19Q5HYK7 790 aa7.24□□□□□ -1.25
VPS41-212ENST00000482217 CD46P15529 392 aa7.23□□□□□ -1.25
VPS41-212ENST00000482217 GCGRP47871 477 aa7.23□□□□□ -1.25
VPS41-212ENST00000482217 PODXL2Q9NZ53 605 aa7.23□□□□□ -1.25
VPS41-212ENST00000482217 GGCXP38435 758 aa7.22□□□□□ -1.25
VPS41-212ENST00000482217 SKIV2LQ15477 1246 aaKnown RBP7.22□□□□□ -1.25
VPS41-212ENST00000482217 GRIPAP1Q4V328 841 aa7.22□□□□□ -1.25
VPS41-212ENST00000482217 BLOC1S3Q6QNY0 202 aa7.22□□□□□ -1.25
VPS41-212ENST00000482217 ZNF516Q92618 1163 aa7.22□□□□□ -1.25
VPS41-212ENST00000482217 PCMTD1Q96MG8 357 aaPredicted RBP7.22□□□□□ -1.25
VPS41-212ENST00000482217 ATP6V1AP38606 617 aa7.21□□□□□ -1.26
VPS41-212ENST00000482217 TTBK1Q5TCY1 1321 aaPredicted RBP7.21□□□□□ -1.26
VPS41-212ENST00000482217 USP46P62068 366 aa7.2□□□□□ -1.26
VPS41-212ENST00000482217 FUT2Q10981 343 aa7.19□□□□□ -1.26
VPS41-212ENST00000482217 MORN1Q5T089 497 aa7.19□□□□□ -1.26
VPS41-212ENST00000482217 MYSM1Q5VVJ2 828 aa7.19□□□□□ -1.26
VPS41-212ENST00000482217 TBC1D2Q9BYX2 928 aa7.19□□□□□ -1.26
VPS41-212ENST00000482217 KDM4AO75164 1064 aa7.18□□□□□ -1.26
VPS41-212ENST00000482217 NUTM1Q86Y26 1132 aa7.18□□□□□ -1.26
VPS41-212ENST00000482217 SCUBE3Q8IX30 993 aa7.18□□□□□ -1.26
VPS41-212ENST00000482217 SPIRE2Q8WWL2 714 aa7.18□□□□□ -1.26
VPS41-212ENST00000482217 SALL2Q9Y467 1007 aaPredicted RBP7.18□□□□□ -1.26
VPS41-212ENST00000482217 ADH1BP00325 375 aa7.17□□□□□ -1.26
VPS41-212ENST00000482217 PPP1R18Q6NYC8 613 aa7.17□□□□□ -1.26
VPS41-212ENST00000482217 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.17□□□□□ -1.26
VPS41-212ENST00000482217 GJA5P36382 358 aa7.16□□□□□ -1.26
VPS41-212ENST00000482217 CLK2P49760 499 aaKnown RBP7.16□□□□□ -1.26
VPS41-212ENST00000482217 TUSC1Q2TAM9 212 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms