RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 EIF4G3O43432 1585 aaKnown RBP18.53■□□□□ 0.56
HDAC6-220ENST00000477528 HSP90AB1P08238 724 aaKnown RBP18.53■□□□□ 0.56
HDAC6-220ENST00000477528 CFAP44Q96MT7 982 aa18.53■□□□□ 0.56
HDAC6-220ENST00000477528 EID1Q9Y6B2 187 aa18.53■□□□□ 0.56
HDAC6-220ENST00000477528 ZKSCAN2Q63HK3 967 aa18.52■□□□□ 0.56
HDAC6-220ENST00000477528 COG6Q9Y2V7 657 aa18.52■□□□□ 0.56
HDAC6-220ENST00000477528 BCL2L13Q9BXK5 485 aa18.52■□□□□ 0.55
HDAC6-220ENST00000477528 LMOD2Q6P5Q4 547 aa18.51■□□□□ 0.55
HDAC6-220ENST00000477528 DNMT1P26358 1616 aaKnown RBP18.51■□□□□ 0.55
HDAC6-220ENST00000477528 FAM69CQ0P6D2 419 aa18.51■□□□□ 0.55
HDAC6-220ENST00000477528 DIAPH1O60610 1272 aaKnown RBP18.5■□□□□ 0.55
HDAC6-220ENST00000477528 RALGAPBQ86X10 1494 aa18.5■□□□□ 0.55
HDAC6-220ENST00000477528 TARBP1Q13395 1621 aaKnown RBP18.49■□□□□ 0.55
HDAC6-220ENST00000477528 CABP2Q9NPB3 220 aa18.48■□□□□ 0.55
HDAC6-220ENST00000477528 COG3Q96JB2 828 aa18.48■□□□□ 0.55
HDAC6-220ENST00000477528 RPGRIP1LQ68CZ1 1315 aa18.48■□□□□ 0.55
HDAC6-220ENST00000477528 SHANK2Q9UPX8 1470 aa18.48■□□□□ 0.55
HDAC6-220ENST00000477528 NUP160Q12769 1436 aa18.47■□□□□ 0.55
HDAC6-220ENST00000477528 MTHFSP49914 203 aa18.47■□□□□ 0.55
HDAC6-220ENST00000477528 TRHP20396 242 aaPredicted RBP18.47■□□□□ 0.55
HDAC6-220ENST00000477528 MAGI3Q5TCQ9 1506 aa18.46■□□□□ 0.55
HDAC6-220ENST00000477528 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.46■□□□□ 0.54
HDAC6-220ENST00000477528 ADGRL1O94910 1474 aa18.45■□□□□ 0.54
HDAC6-220ENST00000477528 SLC12A5Q9H2X9 1139 aa18.44■□□□□ 0.54
HDAC6-220ENST00000477528 SLC52A1Q9NWF4 448 aa18.44■□□□□ 0.54
HDAC6-220ENST00000477528 GGNBP2Q9H3C7 697 aa18.44■□□□□ 0.54
HDAC6-220ENST00000477528 NCLP19338 710 aaKnown RBP18.44■□□□□ 0.54
HDAC6-220ENST00000477528 AAMPQ13685 434 aa18.44■□□□□ 0.54
HDAC6-220ENST00000477528 NGDNQ8NEJ9 315 aaKnown RBP18.44■□□□□ 0.54
HDAC6-220ENST00000477528 RIPK4P57078 832 aa18.43■□□□□ 0.54
HDAC6-220ENST00000477528 TCP11L2Q8N4U5 519 aa18.43■□□□□ 0.54
HDAC6-220ENST00000477528 PZPP20742 1482 aa18.43■□□□□ 0.54
HDAC6-220ENST00000477528 PLCH2O75038 1416 aa18.43■□□□□ 0.54
HDAC6-220ENST00000477528 PAK3O75914 559 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-220ENST00000477528 SYCP2Q9BX26 1530 aa18.42■□□□□ 0.54
HDAC6-220ENST00000477528 MFAP1P55081 439 aaKnown RBP18.42■□□□□ 0.54
HDAC6-220ENST00000477528 DZIP1LQ8IYY4 767 aaKnown RBP18.42■□□□□ 0.54
HDAC6-220ENST00000477528 SPRYD3Q8NCJ5 442 aa18.42■□□□□ 0.54
HDAC6-220ENST00000477528 ADGRL2O95490 1459 aa18.42■□□□□ 0.54
HDAC6-220ENST00000477528 DUOX2Q9NRD8 1548 aa18.41■□□□□ 0.54
HDAC6-220ENST00000477528 SLKQ9H2G2 1235 aaPredicted RBP18.41■□□□□ 0.54
HDAC6-220ENST00000477528 DDX19BQ9UMR2 479 aa18.41■□□□□ 0.54
HDAC6-220ENST00000477528 FAM135AQ9P2D6 1515 aa18.41■□□□□ 0.54
HDAC6-220ENST00000477528 USP35Q9P2H5 1018 aa18.41■□□□□ 0.54
HDAC6-220ENST00000477528 NUTM2FA1L443 756 aa18.4■□□□□ 0.54
HDAC6-220ENST00000477528 TRIM44Q96DX7 344 aaPredicted RBP18.4■□□□□ 0.54
HDAC6-220ENST00000477528 RAPGEF3O95398 923 aa18.4■□□□□ 0.54
HDAC6-220ENST00000477528 OS9Q13438 667 aaPredicted RBP18.4■□□□□ 0.54
HDAC6-220ENST00000477528 STK31Q9BXU1 1019 aa18.4■□□□□ 0.54
HDAC6-220ENST00000477528 GCC2Q8IWJ2 1684 aa18.39■□□□□ 0.53
HDAC6-220ENST00000477528 FANCAO15360 1455 aa18.39■□□□□ 0.53
HDAC6-220ENST00000477528 AMPHP49418 695 aa18.39■□□□□ 0.53
HDAC6-220ENST00000477528 SCAF11Q99590 1463 aaKnown RBP18.38■□□□□ 0.53
HDAC6-220ENST00000477528 ARHGEF12Q9NZN5 1544 aa18.38■□□□□ 0.53
HDAC6-220ENST00000477528 APBB1O00213 710 aa18.38■□□□□ 0.53
HDAC6-220ENST00000477528 CD109Q6YHK3 1445 aa18.38■□□□□ 0.53
HDAC6-220ENST00000477528 PRAG1Q86YV5 1406 aa18.38■□□□□ 0.53
HDAC6-220ENST00000477528 DISP3Q9P2K9 1392 aa18.37■□□□□ 0.53
HDAC6-220ENST00000477528 PANK1Q8TE04 598 aa18.37■□□□□ 0.53
HDAC6-220ENST00000477528 CHMP4AQ9BY43 222 aa18.37■□□□□ 0.53
HDAC6-220ENST00000477528 ELL2O00472 640 aaPredicted RBP18.37■□□□□ 0.53
HDAC6-220ENST00000477528 PRAM1Q96QH2 718 aa18.36■□□□□ 0.53
HDAC6-220ENST00000477528 HMMRO75330 724 aa18.36■□□□□ 0.53
HDAC6-220ENST00000477528 PDE3AQ14432 1141 aa18.36■□□□□ 0.53
HDAC6-220ENST00000477528 TEX14Q8IWB6 1497 aa18.36■□□□□ 0.53
HDAC6-220ENST00000477528 DHX29Q7Z478 1369 aaKnown RBP18.36■□□□□ 0.53
HDAC6-220ENST00000477528 MCCP23508 829 aa18.35■□□□□ 0.53
HDAC6-220ENST00000477528 KIF16BQ96L93 1317 aa18.35■□□□□ 0.53
HDAC6-220ENST00000477528 L1TD1Q5T7N2 865 aaKnown RBP18.34■□□□□ 0.53
HDAC6-220ENST00000477528 ADGRF5Q8IZF2 1346 aa18.34■□□□□ 0.53
HDAC6-220ENST00000477528 NSD3Q9BZ95 1437 aa18.32■□□□□ 0.52
HDAC6-220ENST00000477528 SLC4A3P48751 1232 aa18.32■□□□□ 0.52
HDAC6-220ENST00000477528 GNAI1P63096 354 aa18.32■□□□□ 0.52
HDAC6-220ENST00000477528 SLFN5Q08AF3 891 aa18.32■□□□□ 0.52
HDAC6-220ENST00000477528 WDR63Q8IWG1 891 aa18.32■□□□□ 0.52
HDAC6-220ENST00000477528 CEP170Q5SW79 1584 aa18.32■□□□□ 0.52
HDAC6-220ENST00000477528 UHRF1BP1Q6BDS2 1440 aa18.31■□□□□ 0.52
HDAC6-220ENST00000477528 NINLQ9Y2I6 1382 aa18.31■□□□□ 0.52
HDAC6-220ENST00000477528 BCAR3O75815 825 aa18.31■□□□□ 0.52
HDAC6-220ENST00000477528 SLC4A10Q6U841 1118 aa18.3■□□□□ 0.52
HDAC6-220ENST00000477528 GBP4Q96PP9 640 aa18.3■□□□□ 0.52
HDAC6-220ENST00000477528 API5Q9BZZ5 524 aaKnown RBP18.3■□□□□ 0.52
HDAC6-220ENST00000477528 ATAD2Q6PL18 1390 aa18.29■□□□□ 0.52
HDAC6-220ENST00000477528 ANKRD45Q5TZF3 282 aa18.29■□□□□ 0.52
HDAC6-220ENST00000477528 KDM5BQ9UGL1 1544 aa18.29■□□□□ 0.52
HDAC6-220ENST00000477528 HMOX1P09601 288 aa18.29■□□□□ 0.52
HDAC6-220ENST00000477528 TRAPPC8Q9Y2L5 1435 aa18.28■□□□□ 0.52
HDAC6-220ENST00000477528 CDK19Q9BWU1 502 aa18.28■□□□□ 0.52
HDAC6-220ENST00000477528 BACH2Q9BYV9 841 aa18.28■□□□□ 0.52
HDAC6-220ENST00000477528 PTMSP20962 102 aa18.27■□□□□ 0.52
HDAC6-220ENST00000477528 PARD3Q8TEW0 1356 aa18.27■□□□□ 0.52
HDAC6-220ENST00000477528 RTN4Q9NQC3 1192 aaKnown RBP18.26■□□□□ 0.51
HDAC6-220ENST00000477528 ABCC2Q92887 1545 aa18.26■□□□□ 0.51
HDAC6-220ENST00000477528 EIF2AK4Q9P2K8 1649 aaKnown RBP18.26■□□□□ 0.51
HDAC6-220ENST00000477528 LTV1Q96GA3 475 aaPredicted RBP18.26■□□□□ 0.51
HDAC6-220ENST00000477528 CABP1Q9NZU7 370 aa18.26■□□□□ 0.51
HDAC6-220ENST00000477528 CT47B1P0C2W7 299 aaPredicted RBP18.25■□□□□ 0.51
HDAC6-220ENST00000477528 KCNJ4P48050 445 aa18.25■□□□□ 0.51
HDAC6-220ENST00000477528 WWC1Q8IX03 1113 aa18.25■□□□□ 0.51
HDAC6-220ENST00000477528 EXOSC9Q06265 439 aaKnown RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms