RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 ABCC1P33527 1531 aa11.13□□□□□ -0.63
VAPB-205ENST00000476395 ABCC2Q92887 1545 aa11.13□□□□□ -0.63
VAPB-205ENST00000476395 DUOX2Q9NRD8 1548 aa11.13□□□□□ -0.63
VAPB-205ENST00000476395 CLTCL1P53675 1640 aa11.13□□□□□ -0.63
VAPB-205ENST00000476395 PDE4AP27815 886 aa11.12□□□□□ -0.63
VAPB-205ENST00000476395 GSE1Q14687 1217 aa11.12□□□□□ -0.63
VAPB-205ENST00000476395 C14orf37Q86TY3 774 aa11.12□□□□□ -0.63
VAPB-205ENST00000476395 TSPY4P0CV99 314 aa11.11□□□□□ -0.63
VAPB-205ENST00000476395 TSPY10P0CW01 314 aa11.11□□□□□ -0.63
VAPB-205ENST00000476395 NLRP13Q86W25 1043 aa11.11□□□□□ -0.63
VAPB-205ENST00000476395 BCL11BQ9C0K0 894 aaPredicted RBP11.1□□□□□ -0.63
VAPB-205ENST00000476395 CLASP1Q7Z460 1538 aa11.1□□□□□ -0.63
VAPB-205ENST00000476395 HAP1P54257 671 aaPredicted RBP11.1□□□□□ -0.63
VAPB-205ENST00000476395 VWDEQ8N2E2 1590 aa11.1□□□□□ -0.63
VAPB-205ENST00000476395 IFT172Q9UG01 1749 aa11.1□□□□□ -0.63
VAPB-205ENST00000476395 SYNMO15061 1565 aa11.1□□□□□ -0.63
VAPB-205ENST00000476395 TRPM2O94759 1503 aa11.1□□□□□ -0.63
VAPB-205ENST00000476395 NFKBIBQ15653 356 aa11.1□□□□□ -0.63
VAPB-205ENST00000476395 MROH1Q8NDA8 1641 aa11.09□□□□□ -0.63
VAPB-205ENST00000476395 RCAN3Q9UKA8 241 aa11.09□□□□□ -0.63
VAPB-205ENST00000476395 ZFYVE16Q7Z3T8 1539 aa11.09□□□□□ -0.63
VAPB-205ENST00000476395 PLEKHH1Q9ULM0 1364 aa11.09□□□□□ -0.63
VAPB-205ENST00000476395 ZNF521Q96K83 1311 aa11.08□□□□□ -0.63
VAPB-205ENST00000476395 TRAPPC8Q9Y2L5 1435 aa11.08□□□□□ -0.64
VAPB-205ENST00000476395 A0A0U1RQG5 324 aaPredicted RBP11.08□□□□□ -0.64
VAPB-205ENST00000476395 RGL3Q3MIN7 710 aa11.07□□□□□ -0.64
VAPB-205ENST00000476395 PANK3Q9H999 370 aa11.07□□□□□ -0.64
VAPB-205ENST00000476395 PLIN1O60240 522 aa11.07□□□□□ -0.64
VAPB-205ENST00000476395 C20orf194Q5TEA3 1177 aa11.07□□□□□ -0.64
VAPB-205ENST00000476395 PTPRTO14522 1441 aa11.07□□□□□ -0.64
VAPB-205ENST00000476395 KIAA1210Q9ULL0 1709 aa11.07□□□□□ -0.64
VAPB-205ENST00000476395 USP35Q9P2H5 1018 aa11.06□□□□□ -0.64
VAPB-205ENST00000476395 PLCH2O75038 1416 aa11.06□□□□□ -0.64
VAPB-205ENST00000476395 MROH2AA6NES4 1674 aa11.06□□□□□ -0.64
VAPB-205ENST00000476395 BACH2Q9BYV9 841 aa11.06□□□□□ -0.64
VAPB-205ENST00000476395 TAOK2Q9UL54 1235 aa11.06□□□□□ -0.64
VAPB-205ENST00000476395 RSPH4AQ5TD94 716 aa11.06□□□□□ -0.64
VAPB-205ENST00000476395 KDM2BQ8NHM5 1336 aa11.05□□□□□ -0.64
VAPB-205ENST00000476395 CC2D1BQ5T0F9 858 aaKnown RBP11.05□□□□□ -0.64
VAPB-205ENST00000476395 INO80Q9ULG1 1556 aaPredicted RBP11.05□□□□□ -0.64
VAPB-205ENST00000476395 TET3O43151 1660 aa11.05□□□□□ -0.64
VAPB-205ENST00000476395 PDE3BQ13370 1112 aa11.05□□□□□ -0.64
VAPB-205ENST00000476395 ABCA6Q8N139 1617 aa11.04□□□□□ -0.64
VAPB-205ENST00000476395 SHPRHQ149N8 1683 aa11.04□□□□□ -0.64
VAPB-205ENST00000476395 TAF7LQ5H9L4 462 aa11.04□□□□□ -0.64
VAPB-205ENST00000476395 OSCARQ8IYS5 282 aa11.04□□□□□ -0.64
VAPB-205ENST00000476395 FRAT2O75474 233 aaPredicted RBP11.03□□□□□ -0.64
VAPB-205ENST00000476395 NEURL4Q96JN8 1562 aa11.03□□□□□ -0.64
VAPB-205ENST00000476395 SCAPERQ9BY12 1400 aa11.03□□□□□ -0.64
VAPB-205ENST00000476395 ADAMTS8Q9UP79 889 aa11.03□□□□□ -0.64
VAPB-205ENST00000476395 UGGT1Q9NYU2 1555 aa11.03□□□□□ -0.64
VAPB-205ENST00000476395 ABCA9Q8IUA7 1624 aa11.03□□□□□ -0.64
VAPB-205ENST00000476395 VIRMAQ69YN4 1812 aaKnown RBP11.03□□□□□ -0.64
VAPB-205ENST00000476395 PPM1GO15355 546 aaPredicted RBP11.03□□□□□ -0.64
VAPB-205ENST00000476395 VSIG10Q8N0Z9 540 aa11.03□□□□□ -0.64
VAPB-205ENST00000476395 ZC3H13Q5T200 1668 aaKnown RBP11.03□□□□□ -0.64
VAPB-205ENST00000476395 DHX37Q8IY37 1157 aaKnown RBP11.02□□□□□ -0.64
VAPB-205ENST00000476395 MYO3AQ8NEV4 1616 aa11.02□□□□□ -0.64
VAPB-205ENST00000476395 CRBNQ96SW2 442 aa11.02□□□□□ -0.65
VAPB-205ENST00000476395 ZMYND15Q9H091 742 aa11.02□□□□□ -0.65
VAPB-205ENST00000476395 UHRF1BP1LA0JNW5 1464 aa11.02□□□□□ -0.65
VAPB-205ENST00000476395 DUSP27Q5VZP5 1158 aa11.01□□□□□ -0.65
VAPB-205ENST00000476395 KDM5AP29375 1690 aaKnown RBP11.01□□□□□ -0.65
VAPB-205ENST00000476395 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.01□□□□□ -0.651e-8■□□□□ 9
VAPB-205ENST00000476395 CHMP4AQ9BY43 222 aa11.01□□□□□ -0.65
VAPB-205ENST00000476395 RRAGDQ9NQL2 400 aaPredicted RBP11.01□□□□□ -0.65
VAPB-205ENST00000476395 FGD1P98174 961 aa11.01□□□□□ -0.65
VAPB-205ENST00000476395 SPINK5Q9NQ38 1064 aaPredicted RBP11.01□□□□□ -0.65
VAPB-205ENST00000476395 MAP3K4Q9Y6R4 1608 aa11.01□□□□□ -0.65
VAPB-205ENST00000476395 ASXL1Q8IXJ9 1541 aa11□□□□□ -0.65
VAPB-205ENST00000476395 PPP2R1AP30153 589 aa11□□□□□ -0.65
VAPB-205ENST00000476395 TPRNQ4KMQ1 711 aa11□□□□□ -0.65
VAPB-205ENST00000476395 TRMT2AQ8IZ69 625 aaKnown RBP11□□□□□ -0.65
VAPB-205ENST00000476395 ARAP3Q8WWN8 1544 aa11□□□□□ -0.65
VAPB-205ENST00000476395 TCERG1O14776 1098 aaKnown RBP11□□□□□ -0.65
VAPB-205ENST00000476395 ERVK-7P63135 1459 aa11□□□□□ -0.65
VAPB-205ENST00000476395 SCAF11Q99590 1463 aaKnown RBP10.99□□□□□ -0.65
VAPB-205ENST00000476395 PIK3C2GO75747 1445 aa10.99□□□□□ -0.65
VAPB-205ENST00000476395 NRXN1Q9ULB1 1477 aa10.98□□□□□ -0.65
VAPB-205ENST00000476395 RSPH6AQ9H0K4 717 aa10.98□□□□□ -0.65
VAPB-205ENST00000476395 PPRC1Q5VV67 1664 aaKnown RBP10.98□□□□□ -0.65
VAPB-205ENST00000476395 MS4A1P11836 297 aa10.98□□□□□ -0.65
VAPB-205ENST00000476395 RTEL1-TNFRSF6BF6WH68 1400 aa10.97□□□□□ -0.65
VAPB-205ENST00000476395 DMRT2Q9Y5R5 561 aa10.97□□□□□ -0.65
VAPB-205ENST00000476395 TMF1P82094 1093 aa10.96□□□□□ -0.65
VAPB-205ENST00000476395 NPC1L1Q9UHC9 1359 aa10.96□□□□□ -0.65
VAPB-205ENST00000476395 KIDINS220Q9ULH0 1771 aa10.96□□□□□ -0.66
VAPB-205ENST00000476395 ATP7AQ04656 1500 aa10.96□□□□□ -0.66
VAPB-205ENST00000476395 POGKQ9P215 609 aa10.95□□□□□ -0.66
VAPB-205ENST00000476395 MYOM2P54296 1465 aa10.95□□□□□ -0.66
VAPB-205ENST00000476395 C8orf34Q49A92 452 aa10.95□□□□□ -0.66
VAPB-205ENST00000476395 FAM43AQ8N2R8 423 aa10.95□□□□□ -0.66
VAPB-205ENST00000476395 CARD14Q9BXL6 1004 aa10.95□□□□□ -0.66
VAPB-205ENST00000476395 KIF1BO60333 1816 aa10.94□□□□□ -0.66
VAPB-205ENST00000476395 EFCAB6Q5THR3 1501 aa10.94□□□□□ -0.66
VAPB-205ENST00000476395 PPLO60437 1756 aa10.94□□□□□ -0.66
VAPB-205ENST00000476395 AFAP1Q8N556 730 aa10.93□□□□□ -0.66
VAPB-205ENST00000476395 GLIPR1L2Q4G1C9 344 aa10.93□□□□□ -0.66
VAPB-205ENST00000476395 SLFN5Q08AF3 891 aa10.93□□□□□ -0.66
VAPB-205ENST00000476395 IQSEC2Q5JU85 1478 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms