RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 RNF40O75150 1001 aa4.56□□□□□ -1.68
UBXN4-207ENST00000471246 RBM33Q96EV2 1170 aaKnown RBP4.56□□□□□ -1.68
UBXN4-207ENST00000471246 EPAS1Q99814 870 aa4.56□□□□□ -1.68
UBXN4-207ENST00000471246 EMILIN3Q9NT22 766 aa4.56□□□□□ -1.68
UBXN4-207ENST00000471246 TLL1O43897 1013 aa4.55□□□□□ -1.68
UBXN4-207ENST00000471246 S1PR4O95977 384 aa4.55□□□□□ -1.68
UBXN4-207ENST00000471246 LMOD2Q6P5Q4 547 aa4.55□□□□□ -1.68
UBXN4-207ENST00000471246 SLC16A10Q8TF71 515 aa4.55□□□□□ -1.68
UBXN4-207ENST00000471246 PSMG3-AS1Q96PY0 264 aa4.55□□□□□ -1.68
UBXN4-207ENST00000471246 BLOC1S3Q6QNY0 202 aa4.52□□□□□ -1.69
UBXN4-207ENST00000471246 TMEM151AQ8N4L1 468 aa4.52□□□□□ -1.69
UBXN4-207ENST00000471246 IRF7Q92985 503 aa4.52□□□□□ -1.69
UBXN4-207ENST00000471246 TATDN2Q93075 761 aa4.52□□□□□ -1.69
UBXN4-207ENST00000471246 SENP2Q9HC62 589 aa4.52□□□□□ -1.69
UBXN4-207ENST00000471246 NXF1Q9UBU9 619 aaKnown RBP4.52□□□□□ -1.69
UBXN4-207ENST00000471246 ERBB4Q15303 1308 aa4.51□□□□□ -1.69
UBXN4-207ENST00000471246 PDE4AP27815 886 aa4.51□□□□□ -1.69
UBXN4-207ENST00000471246 TSR1Q2NL82 804 aaKnown RBP4.51□□□□□ -1.69
UBXN4-207ENST00000471246 CYP4X1Q8N118 509 aa4.51□□□□□ -1.69
UBXN4-207ENST00000471246 CDCA7LQ96GN5 454 aa4.51□□□□□ -1.69
UBXN4-207ENST00000471246 PNMA3Q9UL41 463 aa4.51□□□□□ -1.69
UBXN4-207ENST00000471246 GDF11O95390 407 aa4.5□□□□□ -1.69
UBXN4-207ENST00000471246 VEGFBP49765 207 aa4.5□□□□□ -1.69
UBXN4-207ENST00000471246 PCDHB3Q9Y5E6 796 aa4.5□□□□□ -1.69
UBXN4-207ENST00000471246 RGL2O15211 777 aa4.49□□□□□ -1.69
UBXN4-207ENST00000471246 RASSF7Q02833 373 aa4.49□□□□□ -1.69
UBXN4-207ENST00000471246 HDGFP51858 240 aaKnown RBP4.48□□□□□ -1.69
UBXN4-207ENST00000471246 PRSS12P56730 875 aa4.48□□□□□ -1.69
UBXN4-207ENST00000471246 PKD2Q13563 968 aa4.48□□□□□ -1.69
UBXN4-207ENST00000471246 SWT1Q5T5J6 900 aaKnown RBP4.48□□□□□ -1.69
UBXN4-207ENST00000471246 KIFC2Q96AC6 838 aa4.48□□□□□ -1.69
UBXN4-207ENST00000471246 NBPF26B4DH59 902 aa4.47□□□□□ -1.69
UBXN4-207ENST00000471246 H3BM21 787 aa4.47□□□□□ -1.69
UBXN4-207ENST00000471246 ECM2O94769 699 aaPredicted RBP4.47□□□□□ -1.69
UBXN4-207ENST00000471246 NECTIN2Q92692 538 aa4.47□□□□□ -1.69
UBXN4-207ENST00000471246 DDX27Q96GQ7 796 aaKnown RBP4.47□□□□□ -1.69
UBXN4-207ENST00000471246 LARP6Q9BRS8 491 aaKnown RBP4.47□□□□□ -1.69
UBXN4-207ENST00000471246 SMPD1P17405 629 aa4.46□□□□□ -1.7
UBXN4-207ENST00000471246 EN1Q05925 392 aaPredicted RBP4.46□□□□□ -1.7
UBXN4-207ENST00000471246 NUDT18Q6ZVK8 323 aa4.46□□□□□ -1.7
UBXN4-207ENST00000471246 NPAS3Q8IXF0 933 aa4.46□□□□□ -1.7
UBXN4-207ENST00000471246 MFSD10Q14728 455 aa4.45□□□□□ -1.7
UBXN4-207ENST00000471246 SLF2Q8IX21 1173 aa4.45□□□□□ -1.7
UBXN4-207ENST00000471246 DDX12PQ92771 950 aa4.45□□□□□ -1.7
UBXN4-207ENST00000471246 TTC24A2A3L6 582 aaPredicted RBP4.44□□□□□ -1.7
UBXN4-207ENST00000471246 MAP3K7O43318 606 aa4.44□□□□□ -1.7
UBXN4-207ENST00000471246 ADH1BP00325 375 aa4.44□□□□□ -1.7
UBXN4-207ENST00000471246 RPIAP49247 311 aa4.44□□□□□ -1.7
UBXN4-207ENST00000471246 LCE3BQ5TA77 95 aa4.44□□□□□ -1.7
UBXN4-207ENST00000471246 GPAT2Q6NUI2 795 aa4.44□□□□□ -1.7
UBXN4-207ENST00000471246 SLC6A16Q9GZN6 736 aa4.44□□□□□ -1.7
UBXN4-207ENST00000471246 PRR14Q9BWN1 585 aa4.42□□□□□ -1.7
UBXN4-207ENST00000471246 KRTAP9-9Q9BYP9 154 aa4.42□□□□□ -1.7
UBXN4-207ENST00000471246 KRTAP9-4Q9BYQ2 154 aa4.42□□□□□ -1.7
UBXN4-207ENST00000471246 J3QL48 77 aa4.41□□□□□ -1.7
UBXN4-207ENST00000471246 NBR1Q14596 966 aa4.41□□□□□ -1.7
UBXN4-207ENST00000471246 HPS1Q92902 700 aa4.41□□□□□ -1.7
UBXN4-207ENST00000471246 CD2BP2O95400 341 aaKnown RBP4.4□□□□□ -1.71
UBXN4-207ENST00000471246 IGHA1P01876 353 aa4.4□□□□□ -1.71
UBXN4-207ENST00000471246 DPYSL4O14531 572 aa4.39□□□□□ -1.71
UBXN4-207ENST00000471246 ADAM23O75077 832 aa4.39□□□□□ -1.71
UBXN4-207ENST00000471246 PRIM1P49642 420 aaKnown RBP4.39□□□□□ -1.71
UBXN4-207ENST00000471246 SNIP1Q8TAD8 396 aaKnown RBP4.39□□□□□ -1.71
UBXN4-207ENST00000471246 KRTAP4-12Q9BQ66 201 aa4.39□□□□□ -1.71
UBXN4-207ENST00000471246 KRTAP4-8A0A0G2JLE6 195 aa4.38□□□□□ -1.71
UBXN4-207ENST00000471246 ACTN4O43707 911 aaKnown RBP4.38□□□□□ -1.71
UBXN4-207ENST00000471246 NKX1-1Q15270 411 aaPredicted RBP4.38□□□□□ -1.71
UBXN4-207ENST00000471246 CERKQ8TCT0 537 aa4.38□□□□□ -1.71
UBXN4-207ENST00000471246 DNMT3AQ9Y6K1 912 aaPredicted RBP4.38□□□□□ -1.71
UBXN4-207ENST00000471246 HS6ST3Q8IZP7 471 aa4.37□□□□□ -1.71
UBXN4-207ENST00000471246 ADAMTS8Q9UP79 889 aa4.37□□□□□ -1.71
UBXN4-207ENST00000471246 RNF225M0QZC1 329 aaPredicted RBP4.36□□□□□ -1.71
UBXN4-207ENST00000471246 VSIG8P0DPA2 414 aa4.36□□□□□ -1.71
UBXN4-207ENST00000471246 TRIM46Q7Z4K8 759 aa4.36□□□□□ -1.71
UBXN4-207ENST00000471246 WNT7AO00755 349 aa4.35□□□□□ -1.71
UBXN4-207ENST00000471246 TTC13Q8NBP0 860 aa4.35□□□□□ -1.71
UBXN4-207ENST00000471246 FCF1Q9Y324 198 aaKnown RBP4.35□□□□□ -1.71
UBXN4-207ENST00000471246 NR1I2O75469 434 aa4.34□□□□□ -1.71
UBXN4-207ENST00000471246 BMP1P13497 986 aa4.34□□□□□ -1.71
UBXN4-207ENST00000471246 SLC4A3P48751 1232 aa4.34□□□□□ -1.71
UBXN4-207ENST00000471246 CAMK2BQ13554 666 aa4.34□□□□□ -1.71
UBXN4-207ENST00000471246 AMER1Q5JTC6 1135 aaPredicted RBP4.34□□□□□ -1.71
UBXN4-207ENST00000471246 Q8N3U1 123 aa4.34□□□□□ -1.71
UBXN4-207ENST00000471246 EYA1Q99502 592 aa4.34□□□□□ -1.71
UBXN4-207ENST00000471246 CDHR5Q9HBB8 845 aa4.34□□□□□ -1.71
UBXN4-207ENST00000471246 RBM27Q9P2N5 1060 aaKnown RBP4.34□□□□□ -1.71
UBXN4-207ENST00000471246 DCAF8L2P0C7V8 631 aa4.33□□□□□ -1.72
UBXN4-207ENST00000471246 CHGAP10645 457 aaKnown RBP4.33□□□□□ -1.72
UBXN4-207ENST00000471246 FOXK2Q01167 660 aa4.33□□□□□ -1.72
UBXN4-207ENST00000471246 SCUBE3Q8IX30 993 aa4.33□□□□□ -1.72
UBXN4-207ENST00000471246 MRGPRX2Q96LB1 330 aa4.33□□□□□ -1.72
UBXN4-207ENST00000471246 RTN4Q9NQC3 1192 aaKnown RBP4.33□□□□□ -1.72
UBXN4-207ENST00000471246 IRS1P35568 1242 aa4.32□□□□□ -1.72
UBXN4-207ENST00000471246 KMT5BQ4FZB7 885 aa4.32□□□□□ -1.72
UBXN4-207ENST00000471246 SPSB2Q99619 263 aa4.32□□□□□ -1.72
UBXN4-207ENST00000471246 PADI6Q6TGC4 694 aa4.31□□□□□ -1.72
UBXN4-207ENST00000471246 CFHP08603 1231 aa4.3□□□□□ -1.72
UBXN4-207ENST00000471246 BTBD11A6QL63 1104 aa4.29□□□□□ -1.72
UBXN4-207ENST00000471246 DNAJC5Q9H3Z4 198 aa4.29□□□□□ -1.72
UBXN4-207ENST00000471246 KRT76Q01546 638 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms