RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 TTLL12Q14166 644 aaPredicted RBP6.92□□□□□ -1.3
COL3A1-205ENST00000470167 SLAIN1Q8ND83 568 aa6.92□□□□□ -1.3
COL3A1-205ENST00000470167 NECTIN2Q92692 538 aa6.92□□□□□ -1.3
COL3A1-205ENST00000470167 NPDC1Q9NQX5 325 aaPredicted RBP6.92□□□□□ -1.3
COL3A1-205ENST00000470167 CENPJQ9HC77 1338 aaPredicted RBP6.92□□□□□ -1.3
COL3A1-205ENST00000470167 KDM4FA0A1W2PPD8 638 aa6.91□□□□□ -1.3
COL3A1-205ENST00000470167 CLGNO14967 610 aa6.91□□□□□ -1.3
COL3A1-205ENST00000470167 POTEJP0CG39 1038 aa6.91□□□□□ -1.3
COL3A1-205ENST00000470167 TYW1BQ6NUM6 668 aa6.91□□□□□ -1.3
COL3A1-205ENST00000470167 JPH4Q96JJ6 628 aa6.91□□□□□ -1.3
COL3A1-205ENST00000470167 DNAJC2Q99543 621 aaKnown RBP6.91□□□□□ -1.3
COL3A1-205ENST00000470167 CWC22Q9HCG8 908 aaKnown RBP6.91□□□□□ -1.3
COL3A1-205ENST00000470167 PLEKHG3A1L390 1219 aa6.9□□□□□ -1.3
COL3A1-205ENST00000470167 FAM43BQ6ZT52 329 aaPredicted RBP6.9□□□□□ -1.3
COL3A1-205ENST00000470167 KHSRPQ92945 711 aaKnown RBP eCLIP6.9□□□□□ -1.3
COL3A1-205ENST00000470167 NUDT7P0C024 238 aa6.89□□□□□ -1.31
COL3A1-205ENST00000470167 ANAPC15P60006 121 aa6.89□□□□□ -1.31
COL3A1-205ENST00000470167 FAM193AP78312 1265 aa6.89□□□□□ -1.31
COL3A1-205ENST00000470167 RTL5Q5HYW3 569 aaPredicted RBP6.89□□□□□ -1.31
COL3A1-205ENST00000470167 ZNF622Q969S3 477 aaKnown RBP eCLIP6.89□□□□□ -1.31
COL3A1-205ENST00000470167 SUPT16HQ9Y5B9 1047 aaKnown RBP6.89□□□□□ -1.31
COL3A1-205ENST00000470167 HOXB3P14651 431 aaPredicted RBP6.88□□□□□ -1.31
COL3A1-205ENST00000470167 FOSBP53539 338 aa6.88□□□□□ -1.31
COL3A1-205ENST00000470167 GIGYF2Q6Y7W6 1299 aaKnown RBP6.88□□□□□ -1.31
COL3A1-205ENST00000470167 RGS22Q8NE09 1264 aa6.88□□□□□ -1.31
COL3A1-205ENST00000470167 FBXW7Q969H0 707 aa6.88□□□□□ -1.31
COL3A1-205ENST00000470167 DDRGK1Q96HY6 314 aa6.88□□□□□ -1.31
COL3A1-205ENST00000470167 REPIN1Q9BWE0 567 aaKnown RBP6.88□□□□□ -1.31
COL3A1-205ENST00000470167 DOK7Q18PE1 504 aa6.87□□□□□ -1.31
COL3A1-205ENST00000470167 FAM161AQ3B820 660 aa6.87□□□□□ -1.31
COL3A1-205ENST00000470167 ARSIQ5FYB1 569 aa6.87□□□□□ -1.31
COL3A1-205ENST00000470167 GPATCH11Q8N954 259 aa6.87□□□□□ -1.31
COL3A1-205ENST00000470167 ZNF454Q8N9F8 522 aa6.87□□□□□ -1.31
COL3A1-205ENST00000470167 RBM19Q9Y4C8 960 aaKnown RBP6.87□□□□□ -1.31
COL3A1-205ENST00000470167 POTEMA6NI47 508 aa6.86□□□□□ -1.31
COL3A1-205ENST00000470167 PPM1GO15355 546 aaPredicted RBP6.86□□□□□ -1.31
COL3A1-205ENST00000470167 MS4A1P11836 297 aa6.86□□□□□ -1.31
COL3A1-205ENST00000470167 PHOX2BQ99453 314 aa6.86□□□□□ -1.31
COL3A1-205ENST00000470167 CCDC27Q2M243 656 aa6.85□□□□□ -1.31
COL3A1-205ENST00000470167 C6orf132Q5T0Z8 1188 aa6.85□□□□□ -1.31
COL3A1-205ENST00000470167 AXDND1Q5T1B0 1012 aaPredicted RBP6.85□□□□□ -1.31
COL3A1-205ENST00000470167 PADI6Q6TGC4 694 aa6.85□□□□□ -1.31
COL3A1-205ENST00000470167 MAMSTRQ6ZN01 415 aa6.85□□□□□ -1.31
COL3A1-205ENST00000470167 ZDHHC16Q969W1 377 aa6.85□□□□□ -1.31
COL3A1-205ENST00000470167 ADAM33Q9BZ11 813 aa6.85□□□□□ -1.31
COL3A1-205ENST00000470167 MDM2Q00987 491 aaPredicted RBP6.84□□□□□ -1.31
COL3A1-205ENST00000470167 FAM177A1Q8N128 213 aaPredicted RBP6.84□□□□□ -1.31
COL3A1-205ENST00000470167 NLRP7Q8WX94 980 aa6.84□□□□□ -1.31
COL3A1-205ENST00000470167 RIMBP2O15034 1052 aa6.83□□□□□ -1.32
COL3A1-205ENST00000470167 GPR153Q6NV75 609 aa6.83□□□□□ -1.32
COL3A1-205ENST00000470167 POTEGQ6S5H5 508 aa6.83□□□□□ -1.32
COL3A1-205ENST00000470167 TMUB1Q9BVT8 246 aa6.83□□□□□ -1.32
COL3A1-205ENST00000470167 SCUBE2Q9NQ36 999 aa6.83□□□□□ -1.32
COL3A1-205ENST00000470167 CLCN1P35523 988 aa6.82□□□□□ -1.32
COL3A1-205ENST00000470167 HSP90AA2PQ14568 343 aaPredicted RBP6.82□□□□□ -1.32
COL3A1-205ENST00000470167 METTL3Q86U44 580 aaKnown RBP6.82□□□□□ -1.32
COL3A1-205ENST00000470167 CCER1Q8TC90 406 aaPredicted RBP6.82□□□□□ -1.32
COL3A1-205ENST00000470167 ANP32BQ92688 251 aaKnown RBP6.82□□□□□ -1.32
COL3A1-205ENST00000470167 GPCPD1Q9NPB8 672 aa6.82□□□□□ -1.32
COL3A1-205ENST00000470167 WASHC2CQ9Y4E1 1318 aa6.81□□□□□ -1.32
COL3A1-205ENST00000470167 ZNF710Q8N1W2 664 aa6.81□□□□□ -1.32
COL3A1-205ENST00000470167 CEP120Q8N960 986 aa6.81□□□□□ -1.32
COL3A1-205ENST00000470167 CERKQ8TCT0 537 aa6.81□□□□□ -1.32
COL3A1-205ENST00000470167 ZSWIM6Q9HCJ5 1215 aa6.81□□□□□ -1.32
COL3A1-205ENST00000470167 LHX6Q9UPM6 363 aa6.81□□□□□ -1.32
COL3A1-205ENST00000470167 ADGRG1Q9Y653 693 aa6.81□□□□□ -1.32
COL3A1-205ENST00000470167 PXYLP1Q8TE99 480 aa6.8□□□□□ -1.32
COL3A1-205ENST00000470167 FAM163AQ96GL9 167 aaPredicted RBP6.8□□□□□ -1.32
COL3A1-205ENST00000470167 HSP90AB4PQ58FF6 505 aa6.79□□□□□ -1.32
COL3A1-205ENST00000470167 FAM43AQ8N2R8 423 aa6.79□□□□□ -1.32
COL3A1-205ENST00000470167 TTC13Q8NBP0 860 aa6.79□□□□□ -1.32
COL3A1-205ENST00000470167 ZNF526Q8TF50 670 aaPredicted RBP6.79□□□□□ -1.32
COL3A1-205ENST00000470167 RBM27Q9P2N5 1060 aaKnown RBP6.79□□□□□ -1.32
COL3A1-205ENST00000470167 MYO15BQ96JP2 1530 aa6.79□□□□□ -1.32
COL3A1-205ENST00000470167 OATP04181 439 aa6.78□□□□□ -1.32
COL3A1-205ENST00000470167 COL9A1P20849 921 aa6.78□□□□□ -1.32
COL3A1-205ENST00000470167 SSTR3P32745 418 aaPredicted RBP6.78□□□□□ -1.32
COL3A1-205ENST00000470167 PRSS12P56730 875 aa6.78□□□□□ -1.32
COL3A1-205ENST00000470167 NBPF20Q3BBV1 942 aa6.78□□□□□ -1.32
COL3A1-205ENST00000470167 PPP4R3BQ5MIZ7 849 aa6.78□□□□□ -1.32
COL3A1-205ENST00000470167 TRIM44Q96DX7 344 aaPredicted RBP6.78□□□□□ -1.32
COL3A1-205ENST00000470167 CDCA7LQ96GN5 454 aa6.78□□□□□ -1.32
COL3A1-205ENST00000470167 ZNF830Q96NB3 372 aaPredicted RBP6.78□□□□□ -1.32
COL3A1-205ENST00000470167 FAM217BQ9NTX9 383 aaPredicted RBP6.78□□□□□ -1.32
COL3A1-205ENST00000470167 PLEKHD1A6NEE1 506 aa6.77□□□□□ -1.33
COL3A1-205ENST00000470167 RAD21O60216 631 aa6.77□□□□□ -1.33
COL3A1-205ENST00000470167 OS9Q13438 667 aaPredicted RBP6.77□□□□□ -1.33
COL3A1-205ENST00000470167 GOPCQ9HD26 462 aa6.77□□□□□ -1.33
COL3A1-205ENST00000470167 FAM198AQ9UFP1 575 aa6.77□□□□□ -1.33
COL3A1-205ENST00000470167 PATL2C9JE40 543 aaKnown RBP6.76□□□□□ -1.33
COL3A1-205ENST00000470167 IRX3P78415 501 aaPredicted RBP6.76□□□□□ -1.33
COL3A1-205ENST00000470167 DIEXFQ68CQ4 756 aaKnown RBP6.76□□□□□ -1.33
COL3A1-205ENST00000470167 NBPF11Q86T75 865 aa6.76□□□□□ -1.33
COL3A1-205ENST00000470167 EXOC8Q8IYI6 725 aa6.76□□□□□ -1.33
COL3A1-205ENST00000470167 KCTD17Q8N5Z5 321 aa6.76□□□□□ -1.33
COL3A1-205ENST00000470167 BEGAINQ9BUH8 593 aa6.76□□□□□ -1.33
COL3A1-205ENST00000470167 TMEM51Q9NW97 253 aa6.76□□□□□ -1.33
COL3A1-205ENST00000470167 HDAC5Q9UQL6 1122 aa6.76□□□□□ -1.33
COL3A1-205ENST00000470167 TTC36A6NLP5 189 aa6.75□□□□□ -1.33
COL3A1-205ENST00000470167 NBPF1Q3BBV0 1214 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms