RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 MBD5Q9P267 1494 aa13.36□□□□□ -0.27
PTPRE-205ENST00000463727 ADGBQ8N7X0 1667 aa13.36□□□□□ -0.27
PTPRE-205ENST00000463727 ABCC10Q5T3U5 1492 aa13.36□□□□□ -0.27
PTPRE-205ENST00000463727 CLUAP1Q96AJ1 413 aa13.35□□□□□ -0.27
PTPRE-205ENST00000463727 KDM5CP41229 1560 aa13.35□□□□□ -0.27
PTPRE-205ENST00000463727 PMFBP1Q8TBY8 1022 aa13.35□□□□□ -0.27
PTPRE-205ENST00000463727 CDC42BPAQ5VT25 1732 aa13.35□□□□□ -0.27
PTPRE-205ENST00000463727 ARXQ96QS3 562 aa13.34□□□□□ -0.27
PTPRE-205ENST00000463727 MYH16Q9H6N6 1097 aa13.34□□□□□ -0.27
PTPRE-205ENST00000463727 HSP90AA1P07900 732 aaKnown RBP13.34□□□□□ -0.27
PTPRE-205ENST00000463727 SRPK2P78362 688 aaKnown RBP13.34□□□□□ -0.27
PTPRE-205ENST00000463727 RWDD1Q9H446 243 aaPredicted RBP13.33□□□□□ -0.27
PTPRE-205ENST00000463727 SLFN5Q08AF3 891 aa13.33□□□□□ -0.28
PTPRE-205ENST00000463727 DUSP27Q5VZP5 1158 aa13.33□□□□□ -0.28
PTPRE-205ENST00000463727 BCAR3O75815 825 aa13.33□□□□□ -0.28
PTPRE-205ENST00000463727 POGKQ9P215 609 aa13.33□□□□□ -0.28
PTPRE-205ENST00000463727 EIF5BO60841 1220 aaKnown RBP13.33□□□□□ -0.28
PTPRE-205ENST00000463727 BCL2L13Q9BXK5 485 aa13.33□□□□□ -0.28
PTPRE-205ENST00000463727 SYCP2Q9BX26 1530 aa13.32□□□□□ -0.28
PTPRE-205ENST00000463727 GSE1Q14687 1217 aa13.32□□□□□ -0.28
PTPRE-205ENST00000463727 SLKQ9H2G2 1235 aaPredicted RBP13.32□□□□□ -0.28
PTPRE-205ENST00000463727 STK26Q9P289 416 aa13.32□□□□□ -0.28
PTPRE-205ENST00000463727 CLASP1Q7Z460 1538 aa13.31□□□□□ -0.28
PTPRE-205ENST00000463727 NFKBIBQ15653 356 aa13.31□□□□□ -0.28
PTPRE-205ENST00000463727 NUTM2DQ5VT03 806 aaPredicted RBP13.31□□□□□ -0.28
PTPRE-205ENST00000463727 PANK1Q8TE04 598 aa13.3□□□□□ -0.28
PTPRE-205ENST00000463727 RUNDC1Q96C34 613 aa13.3□□□□□ -0.28
PTPRE-205ENST00000463727 ABCC2Q92887 1545 aa13.3□□□□□ -0.28
PTPRE-205ENST00000463727 BCORL1Q5H9F3 1711 aa13.3□□□□□ -0.28
PTPRE-205ENST00000463727 AMER1Q5JTC6 1135 aaPredicted RBP13.3□□□□□ -0.28
PTPRE-205ENST00000463727 A2MP01023 1474 aa13.3□□□□□ -0.28
PTPRE-205ENST00000463727 COL17A1Q9UMD9 1497 aaPredicted RBP13.3□□□□□ -0.28
PTPRE-205ENST00000463727 GPRASP1Q5JY77 1395 aa13.29□□□□□ -0.28
PTPRE-205ENST00000463727 CROCC2H7BZ55 1655 aa13.28□□□□□ -0.28
PTPRE-205ENST00000463727 PDE3AQ14432 1141 aa13.28□□□□□ -0.28
PTPRE-205ENST00000463727 SMC4Q9NTJ3 1288 aa13.28□□□□□ -0.28
PTPRE-205ENST00000463727 SCAPERQ9BY12 1400 aa13.27□□□□□ -0.28
PTPRE-205ENST00000463727 TCP11L2Q8N4U5 519 aa13.27□□□□□ -0.28
PTPRE-205ENST00000463727 PNNQ9H307 717 aaKnown RBP13.27□□□□□ -0.28
PTPRE-205ENST00000463727 SCAF11Q99590 1463 aaKnown RBP13.27□□□□□ -0.29
PTPRE-205ENST00000463727 TMEM132EQ6IEE7 984 aa13.27□□□□□ -0.29
PTPRE-205ENST00000463727 SLC12A5Q9H2X9 1139 aa13.27□□□□□ -0.29
PTPRE-205ENST00000463727 MTHFSP49914 203 aa13.26□□□□□ -0.29
PTPRE-205ENST00000463727 DUOX2Q9NRD8 1548 aa13.26□□□□□ -0.29
PTPRE-205ENST00000463727 EVC2Q86UK5 1308 aa13.26□□□□□ -0.29
PTPRE-205ENST00000463727 ITPRIPQ8IWB1 547 aa13.26□□□□□ -0.29
PTPRE-205ENST00000463727 SPRYD3Q8NCJ5 442 aa13.25□□□□□ -0.29
PTPRE-205ENST00000463727 TTC37Q6PGP7 1564 aa13.25□□□□□ -0.29
PTPRE-205ENST00000463727 VGFO15240 615 aaPredicted RBP13.25□□□□□ -0.29
PTPRE-205ENST00000463727 CDC42BPBQ9Y5S2 1711 aa13.25□□□□□ -0.29
PTPRE-205ENST00000463727 ARHGEF5Q12774 1597 aa13.25□□□□□ -0.29
PTPRE-205ENST00000463727 PLEKHH1Q9ULM0 1364 aa13.24□□□□□ -0.29
PTPRE-205ENST00000463727 IPO8O15397 1037 aaKnown RBP13.24□□□□□ -0.29
PTPRE-205ENST00000463727 ZKSCAN2Q63HK3 967 aa13.24□□□□□ -0.29
PTPRE-205ENST00000463727 PLCH2O75038 1416 aa13.24□□□□□ -0.29
PTPRE-205ENST00000463727 PREX2Q70Z35 1606 aa13.24□□□□□ -0.29
PTPRE-205ENST00000463727 SAMD9LQ8IVG5 1584 aa13.24□□□□□ -0.29
PTPRE-205ENST00000463727 WWC1Q8IX03 1113 aa13.24□□□□□ -0.29
PTPRE-205ENST00000463727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.24□□□□□ -0.29
PTPRE-205ENST00000463727 ESF1Q9H501 851 aaKnown RBP13.23□□□□□ -0.29
PTPRE-205ENST00000463727 TERF2IPQ9NYB0 399 aa13.23□□□□□ -0.29
PTPRE-205ENST00000463727 EIF2AK4Q9P2K8 1649 aaKnown RBP13.23□□□□□ -0.29
PTPRE-205ENST00000463727 HDGFL2Q7Z4V5 671 aaPredicted RBP13.23□□□□□ -0.29
PTPRE-205ENST00000463727 ADGRF5Q8IZF2 1346 aa13.23□□□□□ -0.29
PTPRE-205ENST00000463727 AAMPQ13685 434 aa13.22□□□□□ -0.29
PTPRE-205ENST00000463727 INSRP06213 1382 aa13.22□□□□□ -0.29
PTPRE-205ENST00000463727 NKTRP30414 1462 aaKnown RBP13.22□□□□□ -0.29
PTPRE-205ENST00000463727 ZCCHC11Q5TAX3 1644 aaKnown RBP13.22□□□□□ -0.29
PTPRE-205ENST00000463727 KDM5DQ9BY66 1539 aa13.22□□□□□ -0.29
PTPRE-205ENST00000463727 BLMP54132 1417 aaPredicted RBP13.21□□□□□ -0.29
PTPRE-205ENST00000463727 MFAP1P55081 439 aaKnown RBP13.21□□□□□ -0.29
PTPRE-205ENST00000463727 CHMP4BQ9H444 224 aaKnown RBP13.21□□□□□ -0.29
PTPRE-205ENST00000463727 HSCBQ8IWL3 235 aa13.21□□□□□ -0.3
PTPRE-205ENST00000463727 TRAPPC8Q9Y2L5 1435 aa13.2□□□□□ -0.3
PTPRE-205ENST00000463727 ASXL1Q8IXJ9 1541 aa13.2□□□□□ -0.3
PTPRE-205ENST00000463727 DZIP1LQ8IYY4 767 aaKnown RBP13.2□□□□□ -0.3
PTPRE-205ENST00000463727 FRAT2O75474 233 aaPredicted RBP13.2□□□□□ -0.3
PTPRE-205ENST00000463727 IL27Q8NEV9 243 aa13.2□□□□□ -0.3
PTPRE-205ENST00000463727 NINLQ9Y2I6 1382 aa13.19□□□□□ -0.3
PTPRE-205ENST00000463727 UHRF1BP1LA0JNW5 1464 aa13.19□□□□□ -0.3
PTPRE-205ENST00000463727 L1TD1Q5T7N2 865 aaKnown RBP13.19□□□□□ -0.3
PTPRE-205ENST00000463727 WDR63Q8IWG1 891 aa13.19□□□□□ -0.3
PTPRE-205ENST00000463727 CABP2Q9NPB3 220 aa13.18□□□□□ -0.3
PTPRE-205ENST00000463727 PLA2R1Q13018 1463 aa13.18□□□□□ -0.3
PTPRE-205ENST00000463727 NSD3Q9BZ95 1437 aa13.18□□□□□ -0.3
PTPRE-205ENST00000463727 ZMYM4Q5VZL5 1548 aa13.18□□□□□ -0.3
PTPRE-205ENST00000463727 MYO5CQ9NQX4 1742 aa13.18□□□□□ -0.3
PTPRE-205ENST00000463727 POLR1AO95602 1720 aaPredicted RBP13.17□□□□□ -0.3
PTPRE-205ENST00000463727 PIK3C2GO75747 1445 aa13.17□□□□□ -0.3
PTPRE-205ENST00000463727 HSP90AB1P08238 724 aaKnown RBP13.17□□□□□ -0.3
PTPRE-205ENST00000463727 ANP32BQ92688 251 aaKnown RBP13.17□□□□□ -0.3
PTPRE-205ENST00000463727 GGNBP2Q9H3C7 697 aa13.17□□□□□ -0.3
PTPRE-205ENST00000463727 PDZRN3Q9UPQ7 1066 aa13.17□□□□□ -0.3
PTPRE-205ENST00000463727 DDX19BQ9UMR2 479 aa13.16□□□□□ -0.3
PTPRE-205ENST00000463727 SPINK5Q9NQ38 1064 aaPredicted RBP13.16□□□□□ -0.3
PTPRE-205ENST00000463727 MINK1Q8N4C8 1332 aaPredicted RBP13.16□□□□□ -0.3
PTPRE-205ENST00000463727 IGHDP01880 384 aa13.16□□□□□ -0.3
PTPRE-205ENST00000463727 RARSP54136 660 aaKnown RBP13.16□□□□□ -0.3
PTPRE-205ENST00000463727 KDM2BQ8NHM5 1336 aa13.15□□□□□ -0.3
PTPRE-205ENST00000463727 C8orf34Q49A92 452 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms