RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 ZNF787Q6DD87 383 aa10.9□□□□□ -0.66
USH2A-203ENST00000463147 TMEM134Q9H6X4 195 aa10.9□□□□□ -0.66
USH2A-203ENST00000463147 ACTN4O43707 911 aaKnown RBP10.89□□□□□ -0.67
USH2A-203ENST00000463147 BLOC1S3Q6QNY0 202 aa10.89□□□□□ -0.67
USH2A-203ENST00000463147 RNF223E7ERA6 249 aa10.88□□□□□ -0.67
USH2A-203ENST00000463147 ANKLE1Q8NAG6 615 aa10.88□□□□□ -0.67
USH2A-203ENST00000463147 ADGRG1Q9Y653 693 aa10.87□□□□□ -0.67
USH2A-203ENST00000463147 MLLT3P42568 568 aaPredicted RBP10.86□□□□□ -0.67
USH2A-203ENST00000463147 NR1I2O75469 434 aa10.85□□□□□ -0.67
USH2A-203ENST00000463147 PRR20EP86478 221 aa10.85□□□□□ -0.67
USH2A-203ENST00000463147 PRR20CP86479 221 aa10.85□□□□□ -0.67
USH2A-203ENST00000463147 PRR20DP86480 221 aa10.85□□□□□ -0.67
USH2A-203ENST00000463147 PRR20BP86481 221 aa10.85□□□□□ -0.67
USH2A-203ENST00000463147 PRR20AP86496 221 aa10.85□□□□□ -0.67
USH2A-203ENST00000463147 RSPH4AQ5TD94 716 aa10.85□□□□□ -0.67
USH2A-203ENST00000463147 ZNF598Q86UK7 904 aaKnown RBP10.85□□□□□ -0.67
USH2A-203ENST00000463147 P3H3Q8IVL6 736 aa10.85□□□□□ -0.67
USH2A-203ENST00000463147 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.84□□□□□ -0.67
USH2A-203ENST00000463147 DGAT1O75907 488 aa10.84□□□□□ -0.67
USH2A-203ENST00000463147 SPRYD7Q5W111 196 aa10.84□□□□□ -0.67
USH2A-203ENST00000463147 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
USH2A-203ENST00000463147 NUTM2FA1L443 756 aa10.83□□□□□ -0.68
USH2A-203ENST00000463147 RCCD1A6NED2 376 aa10.83□□□□□ -0.68
USH2A-203ENST00000463147 FCHSD2O94868 740 aa10.83□□□□□ -0.68
USH2A-203ENST00000463147 PKDCCQ504Y2 493 aa10.83□□□□□ -0.68
USH2A-203ENST00000463147 CFHP08603 1231 aa10.82□□□□□ -0.68
USH2A-203ENST00000463147 KCNV2Q8TDN2 545 aa10.82□□□□□ -0.68
USH2A-203ENST00000463147 ADH1BP00325 375 aa10.81□□□□□ -0.68
USH2A-203ENST00000463147 OATP04181 439 aa10.81□□□□□ -0.68
USH2A-203ENST00000463147 TRIM67Q6ZTA4 783 aa10.79□□□□□ -0.68
USH2A-203ENST00000463147 TLL1O43897 1013 aa10.78□□□□□ -0.68
USH2A-203ENST00000463147 S1PR4O95977 384 aa10.78□□□□□ -0.68
USH2A-203ENST00000463147 ZNF697Q5TEC3 545 aa10.77□□□□□ -0.69
USH2A-203ENST00000463147 SLC6A16Q9GZN6 736 aa10.77□□□□□ -0.69
USH2A-203ENST00000463147 LMOD2Q6P5Q4 547 aa10.75□□□□□ -0.69
USH2A-203ENST00000463147 TSHZ2Q9NRE2 1034 aa10.75□□□□□ -0.69
USH2A-203ENST00000463147 MYT1Q01538 1121 aa10.74□□□□□ -0.69
USH2A-203ENST00000463147 EMID1Q96A84 441 aaPredicted RBP10.74□□□□□ -0.69
USH2A-203ENST00000463147 SLC10A3P09131 477 aa10.73□□□□□ -0.69
USH2A-203ENST00000463147 HIC1Q14526 733 aa10.73□□□□□ -0.69
USH2A-203ENST00000463147 LIAT1Q6ZQX7 453 aa10.73□□□□□ -0.69
USH2A-203ENST00000463147 PXYLP1Q8TE99 480 aa10.73□□□□□ -0.69
USH2A-203ENST00000463147 ZNF775Q96BV0 537 aaPredicted RBP10.73□□□□□ -0.69
USH2A-203ENST00000463147 PPEF1O14829 653 aaPredicted RBP10.72□□□□□ -0.69
USH2A-203ENST00000463147 SMYD5Q6GMV2 418 aa10.72□□□□□ -0.69
USH2A-203ENST00000463147 SCUBE3Q8IX30 993 aa10.72□□□□□ -0.69
USH2A-203ENST00000463147 GDF9O60383 454 aa10.71□□□□□ -0.69
USH2A-203ENST00000463147 FAM187AA6NFU0 413 aa10.7□□□□□ -0.7
USH2A-203ENST00000463147 FAM161AQ3B820 660 aa10.7□□□□□ -0.7
USH2A-203ENST00000463147 SPSB2Q99619 263 aa10.7□□□□□ -0.7
USH2A-203ENST00000463147 METTL3Q86U44 580 aaKnown RBP10.68□□□□□ -0.7
USH2A-203ENST00000463147 RPIAP49247 311 aa10.67□□□□□ -0.7
USH2A-203ENST00000463147 TNFRSF10AO00220 468 aa10.66□□□□□ -0.7
USH2A-203ENST00000463147 SEMA3EO15041 775 aa10.65□□□□□ -0.7
USH2A-203ENST00000463147 DAXXQ9UER7 740 aaPredicted RBP10.65□□□□□ -0.7
USH2A-203ENST00000463147 CD2BP2O95400 341 aaKnown RBP10.64□□□□□ -0.71
USH2A-203ENST00000463147 SULF1Q8IWU6 871 aa10.63□□□□□ -0.71
USH2A-203ENST00000463147 RDH13Q8NBN7 331 aa10.63□□□□□ -0.71
USH2A-203ENST00000463147 GNPATO15228 680 aa10.62□□□□□ -0.71
USH2A-203ENST00000463147 PUS10Q3MIT2 529 aaKnown RBP10.62□□□□□ -0.71
USH2A-203ENST00000463147 FMNL1O95466 1100 aaPredicted RBP10.61□□□□□ -0.71
USH2A-203ENST00000463147 ATP6V1AP38606 617 aa10.61□□□□□ -0.71
USH2A-203ENST00000463147 PLA2G2CQ5R387 149 aa10.61□□□□□ -0.71
USH2A-203ENST00000463147 SALL2Q9Y467 1007 aaPredicted RBP10.61□□□□□ -0.71
USH2A-203ENST00000463147 MORN1Q5T089 497 aa10.6□□□□□ -0.71
USH2A-203ENST00000463147 CRIPAKQ8N1N5 446 aa10.6□□□□□ -0.71
USH2A-203ENST00000463147 GRIPAP1Q4V328 841 aa10.59□□□□□ -0.71
USH2A-203ENST00000463147 AAASQ9NRG9 546 aa10.59□□□□□ -0.71
USH2A-203ENST00000463147 TESPA1A2RU30 521 aaPredicted RBP10.58□□□□□ -0.72
USH2A-203ENST00000463147 FOXC1Q12948 553 aa10.58□□□□□ -0.72
USH2A-203ENST00000463147 PKD2L1Q9P0L9 805 aa10.58□□□□□ -0.72
USH2A-203ENST00000463147 CTC1Q2NKJ3 1217 aa10.57□□□□□ -0.72
USH2A-203ENST00000463147 CYP4X1Q8N118 509 aa10.57□□□□□ -0.72
USH2A-203ENST00000463147 DDX11L8A8MPP1 907 aa10.56□□□□□ -0.72
USH2A-203ENST00000463147 ZBTB24O43167 697 aaPredicted RBP10.56□□□□□ -0.72
USH2A-203ENST00000463147 AVPP01185 164 aa10.56□□□□□ -0.72
USH2A-203ENST00000463147 FUT2Q10981 343 aa10.56□□□□□ -0.72
USH2A-203ENST00000463147 THAP11Q96EK4 314 aa10.56□□□□□ -0.72
USH2A-203ENST00000463147 FCF1Q9Y324 198 aaKnown RBP10.56□□□□□ -0.72
USH2A-203ENST00000463147 GCGRP47871 477 aa10.55□□□□□ -0.72
USH2A-203ENST00000463147 POTECB2RU33 542 aa10.54□□□□□ -0.72
USH2A-203ENST00000463147 RBM26Q5T8P6 1007 aaKnown RBP10.54□□□□□ -0.72
USH2A-203ENST00000463147 TOR4AQ9NXH8 423 aa10.54□□□□□ -0.72
USH2A-203ENST00000463147 MSS51Q4VC12 460 aa10.53□□□□□ -0.72
USH2A-203ENST00000463147 TREML4Q6UXN2 200 aa10.53□□□□□ -0.72
USH2A-203ENST00000463147 AXIN1O15169 862 aa10.52□□□□□ -0.73
USH2A-203ENST00000463147 ST8SIA5O15466 376 aa10.52□□□□□ -0.73
USH2A-203ENST00000463147 SLC27A5Q9Y2P5 690 aa10.52□□□□□ -0.73
USH2A-203ENST00000463147 SMCPP49901 116 aaPredicted RBP10.51□□□□□ -0.73
USH2A-203ENST00000463147 Q3C1V9 767 aa10.51□□□□□ -0.73
USH2A-203ENST00000463147 BRICD5Q6PL45 260 aa10.51□□□□□ -0.73
USH2A-203ENST00000463147 FAM160A2Q8N612 972 aaPredicted RBP10.51□□□□□ -0.73
USH2A-203ENST00000463147 FECHP22830 423 aa10.49□□□□□ -0.73
USH2A-203ENST00000463147 TTC24A2A3L6 582 aaPredicted RBP10.48□□□□□ -0.73
USH2A-203ENST00000463147 GPR37O15354 613 aa10.48□□□□□ -0.73
USH2A-203ENST00000463147 C11orf95C9JLR9 678 aaPredicted RBP10.45□□□□□ -0.74
USH2A-203ENST00000463147 WNT7AO00755 349 aa10.45□□□□□ -0.74
USH2A-203ENST00000463147 GPIHBP1Q8IV16 184 aa10.44□□□□□ -0.74
USH2A-203ENST00000463147 SNIP1Q8TAD8 396 aaKnown RBP10.44□□□□□ -0.74
USH2A-203ENST00000463147 REPIN1Q9BWE0 567 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms