RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 ZMYM3Q14202 1370 aa13□□□□□ -0.33
COL28A1-205ENST00000453441 SETD1BQ9UPS6 1966 aaKnown RBP13□□□□□ -0.33
COL28A1-205ENST00000453441 C3P01024 1663 aa12.99□□□□□ -0.33
COL28A1-205ENST00000453441 CAMSAP1Q5T5Y3 1602 aa12.99□□□□□ -0.33
COL28A1-205ENST00000453441 PZPP20742 1482 aa12.99□□□□□ -0.33
COL28A1-205ENST00000453441 HRCP23327 699 aa12.99□□□□□ -0.33
COL28A1-205ENST00000453441 CEP152O94986 1710 aa12.99□□□□□ -0.33
COL28A1-205ENST00000453441 TET3O43151 1660 aa12.99□□□□□ -0.33
COL28A1-205ENST00000453441 RPRD2Q5VT52 1461 aaKnown RBP12.98□□□□□ -0.33
COL28A1-205ENST00000453441 NUP155O75694 1391 aa12.97□□□□□ -0.33
COL28A1-205ENST00000453441 EFCAB6Q5THR3 1501 aa12.97□□□□□ -0.33
COL28A1-205ENST00000453441 CD44P16070 742 aaKnown RBP12.95□□□□□ -0.34
COL28A1-205ENST00000453441 RAB3GAP2Q9H2M9 1393 aa12.94□□□□□ -0.34
COL28A1-205ENST00000453441 EVX2Q03828 476 aa12.93□□□□□ -0.34
COL28A1-205ENST00000453441 SPATA31D1Q6ZQQ2 1576 aa12.93□□□□□ -0.34
COL28A1-205ENST00000453441 PREX1Q8TCU6 1659 aa12.93□□□□□ -0.34
COL28A1-205ENST00000453441 SP7Q8TDD2 431 aaPredicted RBP12.92□□□□□ -0.34
COL28A1-205ENST00000453441 TRIM52Q96A61 297 aa12.92□□□□□ -0.34
COL28A1-205ENST00000453441 ERVK-7P63135 1459 aa12.91□□□□□ -0.34
COL28A1-205ENST00000453441 PAK3O75914 559 aaPredicted RBP12.91□□□□□ -0.34
COL28A1-205ENST00000453441 TNRQ92752 1358 aa12.91□□□□□ -0.34
COL28A1-205ENST00000453441 NLRP1Q9C000 1473 aa12.91□□□□□ -0.34
COL28A1-205ENST00000453441 UHRF1BP1Q6BDS2 1440 aa12.9□□□□□ -0.34
COL28A1-205ENST00000453441 CEBPAP49715 358 aaPredicted RBP12.9□□□□□ -0.34
COL28A1-205ENST00000453441 NOS1P29475 1434 aa12.89□□□□□ -0.35
COL28A1-205ENST00000453441 E9PCH4 1651 aa12.89□□□□□ -0.35
COL28A1-205ENST00000453441 MYO3AQ8NEV4 1616 aa12.88□□□□□ -0.35
COL28A1-205ENST00000453441 ZNF142P52746 1687 aaPredicted RBP12.88□□□□□ -0.35
COL28A1-205ENST00000453441 A2ML1A8K2U0 1454 aa12.86□□□□□ -0.35
COL28A1-205ENST00000453441 FBXO31Q5XUX0 539 aaPredicted RBP12.86□□□□□ -0.35
COL28A1-205ENST00000453441 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
COL28A1-205ENST00000453441 SLC52A1Q9NWF4 448 aa12.86□□□□□ -0.35
COL28A1-205ENST00000453441 PTPRTO14522 1441 aa12.86□□□□□ -0.35
COL28A1-205ENST00000453441 KDM5AP29375 1690 aaKnown RBP12.86□□□□□ -0.35
COL28A1-205ENST00000453441 CFAP65Q6ZU64 1925 aaKnown RBP12.86□□□□□ -0.35
COL28A1-205ENST00000453441 CEP170BQ9Y4F5 1589 aaPredicted RBP12.86□□□□□ -0.35
COL28A1-205ENST00000453441 SPHKAPQ2M3C7 1700 aa12.85□□□□□ -0.35
COL28A1-205ENST00000453441 MPHOSPH9Q99550 1183 aa12.85□□□□□ -0.35
COL28A1-205ENST00000453441 ZRANB1Q9UGI0 708 aa12.85□□□□□ -0.35
COL28A1-205ENST00000453441 LMTK3Q96Q04 1460 aa12.85□□□□□ -0.35
COL28A1-205ENST00000453441 SYNMO15061 1565 aa12.84□□□□□ -0.35
COL28A1-205ENST00000453441 TRPM2O94759 1503 aa12.83□□□□□ -0.35
COL28A1-205ENST00000453441 CLCN6P51797 869 aa12.83□□□□□ -0.36
COL28A1-205ENST00000453441 PKD2Q13563 968 aa12.83□□□□□ -0.36
COL28A1-205ENST00000453441 PIK3C2BO00750 1634 aa12.83□□□□□ -0.36
COL28A1-205ENST00000453441 NUBP1P53384 320 aa12.82□□□□□ -0.36
COL28A1-205ENST00000453441 IFNLR1Q8IU57 520 aaPredicted RBP12.81□□□□□ -0.36
COL28A1-205ENST00000453441 UGGT1Q9NYU2 1555 aa12.81□□□□□ -0.36
COL28A1-205ENST00000453441 PLA2R1Q13018 1463 aa12.8□□□□□ -0.36
COL28A1-205ENST00000453441 ADGRB3O60242 1522 aa12.8□□□□□ -0.36
COL28A1-205ENST00000453441 THEMISQ8N1K5 641 aaPredicted RBP12.8□□□□□ -0.36
COL28A1-205ENST00000453441 ZNF579Q8NAF0 562 aaKnown RBP12.8□□□□□ -0.36
COL28A1-205ENST00000453441 UBR1Q8IWV7 1749 aa12.79□□□□□ -0.36
COL28A1-205ENST00000453441 IDI1Q13907 227 aa12.78□□□□□ -0.36
COL28A1-205ENST00000453441 RASEFQ8IZ41 740 aa12.78□□□□□ -0.36
COL28A1-205ENST00000453441 TSPYL2Q9H2G4 693 aaPredicted RBP12.77□□□□□ -0.37
COL28A1-205ENST00000453441 CCDC144AA2RUR9 1427 aa12.77□□□□□ -0.37
COL28A1-205ENST00000453441 NEURL4Q96JN8 1562 aa12.77□□□□□ -0.37
COL28A1-205ENST00000453441 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
COL28A1-205ENST00000453441 SLIT1O75093 1534 aa12.76□□□□□ -0.37
COL28A1-205ENST00000453441 KIF1BO60333 1816 aa12.76□□□□□ -0.37
COL28A1-205ENST00000453441 TMEM131LA2VDJ0 1609 aa12.75□□□□□ -0.37
COL28A1-205ENST00000453441 HDGFP51858 240 aaKnown RBP12.75□□□□□ -0.37
COL28A1-205ENST00000453441 CLTCL1P53675 1640 aa12.75□□□□□ -0.37
COL28A1-205ENST00000453441 ARHGAP23Q9P227 1491 aa12.74□□□□□ -0.37
COL28A1-205ENST00000453441 ANKRD30BQ9BXX2 1392 aa12.74□□□□□ -0.37
COL28A1-205ENST00000453441 SPOCK2Q92563 424 aa12.74□□□□□ -0.37
COL28A1-205ENST00000453441 FAM212AQ96EL1 285 aa12.74□□□□□ -0.37
COL28A1-205ENST00000453441 TMEM2Q9UHN6 1383 aa12.73□□□□□ -0.37
COL28A1-205ENST00000453441 POLR1AO95602 1720 aaPredicted RBP12.72□□□□□ -0.37
COL28A1-205ENST00000453441 GABBR2O75899 941 aa12.72□□□□□ -0.37
COL28A1-205ENST00000453441 ANKLE2Q86XL3 938 aa12.72□□□□□ -0.37
COL28A1-205ENST00000453441 CCDC61Q9Y6R9 512 aa12.72□□□□□ -0.37
COL28A1-205ENST00000453441 DHX57Q6P158 1386 aaKnown RBP12.71□□□□□ -0.37
COL28A1-205ENST00000453441 RPGRIP1LQ68CZ1 1315 aa12.71□□□□□ -0.37
COL28A1-205ENST00000453441 HSPA2P54652 639 aa12.71□□□□□ -0.37
COL28A1-205ENST00000453441 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.71□□□□□ -0.37
COL28A1-205ENST00000453441 EID1Q9Y6B2 187 aa12.71□□□□□ -0.37
COL28A1-205ENST00000453441 CHGAP10645 457 aaKnown RBP12.7□□□□□ -0.38
COL28A1-205ENST00000453441 MED14O60244 1454 aa12.7□□□□□ -0.38
COL28A1-205ENST00000453441 SCAF11Q99590 1463 aaKnown RBP12.7□□□□□ -0.38
COL28A1-205ENST00000453441 MYO5BQ9ULV0 1848 aa12.69□□□□□ -0.38
COL28A1-205ENST00000453441 STRCQ7RTU9 1775 aa12.69□□□□□ -0.38
COL28A1-205ENST00000453441 SPATA31E1Q6ZUB1 1445 aa12.69□□□□□ -0.38
COL28A1-205ENST00000453441 ZFYVE9O95405 1425 aa12.68□□□□□ -0.38
COL28A1-205ENST00000453441 RIMS2Q9UQ26 1411 aa12.68□□□□□ -0.38
COL28A1-205ENST00000453441 CLSPNQ9HAW4 1339 aa12.67□□□□□ -0.38
COL28A1-205ENST00000453441 GSE1Q14687 1217 aa12.67□□□□□ -0.38
COL28A1-205ENST00000453441 DCAF8Q5TAQ9 597 aa12.67□□□□□ -0.38
COL28A1-205ENST00000453441 TXNDC2Q86VQ3 553 aa12.67□□□□□ -0.38
COL28A1-205ENST00000453441 STAC3Q96MF2 364 aa12.67□□□□□ -0.38
COL28A1-205ENST00000453441 NPHP4O75161 1426 aaPredicted RBP12.66□□□□□ -0.38
COL28A1-205ENST00000453441 ZNF326Q5BKZ1 582 aaKnown RBP12.66□□□□□ -0.38
COL28A1-205ENST00000453441 PHF12Q96QT6 1004 aa12.66□□□□□ -0.38
COL28A1-205ENST00000453441 IQGAP1P46940 1657 aa12.65□□□□□ -0.38
COL28A1-205ENST00000453441 NEXMIFQ5QGS0 1516 aa12.65□□□□□ -0.38
COL28A1-205ENST00000453441 PLEKHG1Q9ULL1 1385 aa12.65□□□□□ -0.38
COL28A1-205ENST00000453441 VGFO15240 615 aaPredicted RBP12.64□□□□□ -0.39
COL28A1-205ENST00000453441 PPP1R15AO75807 674 aaPredicted RBP12.64□□□□□ -0.39
COL28A1-205ENST00000453441 PPLO60437 1756 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms