RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 BECN1Q14457 450 aa9.44□□□□□ -0.9
SYNE1-213ENST00000448038 FBXO31Q5XUX0 539 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-213ENST00000448038 ITSN2Q9NZM3 1697 aa9.43□□□□□ -0.9
SYNE1-213ENST00000448038 TARBP1Q13395 1621 aaKnown RBP9.43□□□□□ -0.9
SYNE1-213ENST00000448038 NUTM2GQ5VZR2 741 aa9.43□□□□□ -0.9
SYNE1-213ENST00000448038 SLC12A5Q9H2X9 1139 aa9.43□□□□□ -0.9
SYNE1-213ENST00000448038 EIF5BO60841 1220 aaKnown RBP9.43□□□□□ -0.9
SYNE1-213ENST00000448038 DDRGK1Q96HY6 314 aa9.43□□□□□ -0.9
SYNE1-213ENST00000448038 CDK19Q9BWU1 502 aa9.43□□□□□ -0.9
SYNE1-213ENST00000448038 WDR97A6NE52 1622 aa9.42□□□□□ -0.9
SYNE1-213ENST00000448038 NLRP6P59044 892 aa9.42□□□□□ -0.9
SYNE1-213ENST00000448038 CLUAP1Q96AJ1 413 aa9.42□□□□□ -0.9
SYNE1-213ENST00000448038 C1orf141Q5JVX7 400 aa9.42□□□□□ -0.9
SYNE1-213ENST00000448038 ESCO1Q5FWF5 840 aa9.42□□□□□ -0.9
SYNE1-213ENST00000448038 PMFBP1Q8TBY8 1022 aa9.42□□□□□ -0.9
SYNE1-213ENST00000448038 SYCP2Q9BX26 1530 aa9.41□□□□□ -0.9
SYNE1-213ENST00000448038 IDI1Q13907 227 aa9.41□□□□□ -0.9
SYNE1-213ENST00000448038 PTPRKQ15262 1439 aa9.41□□□□□ -0.9
SYNE1-213ENST00000448038 ERICH6BQ5W0A0 696 aa9.41□□□□□ -0.9
SYNE1-213ENST00000448038 ZBED9Q6R2W3 1325 aa9.41□□□□□ -0.9
SYNE1-213ENST00000448038 E9PSI1 815 aa9.41□□□□□ -0.9
SYNE1-213ENST00000448038 ELL2O00472 640 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-213ENST00000448038 CEBPAP49715 358 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-213ENST00000448038 APBB1O00213 710 aa9.4□□□□□ -0.9
SYNE1-213ENST00000448038 ABCC2Q92887 1545 aa9.4□□□□□ -0.9
SYNE1-213ENST00000448038 TEX14Q8IWB6 1497 aa9.4□□□□□ -0.9
SYNE1-213ENST00000448038 CABP1Q9NZU7 370 aa9.4□□□□□ -0.9
SYNE1-213ENST00000448038 PPP6R1Q9UPN7 881 aa9.4□□□□□ -0.9
SYNE1-213ENST00000448038 MTHFSP49914 203 aa9.4□□□□□ -0.9
SYNE1-213ENST00000448038 GPRASP1Q5JY77 1395 aa9.4□□□□□ -0.9
SYNE1-213ENST00000448038 SLC4A10Q6U841 1118 aa9.4□□□□□ -0.9
SYNE1-213ENST00000448038 CEP170Q5SW79 1584 aa9.4□□□□□ -0.91
SYNE1-213ENST00000448038 TEFQ10587 303 aa9.4□□□□□ -0.91
SYNE1-213ENST00000448038 ABTB2Q8N961 1025 aa9.4□□□□□ -0.91
SYNE1-213ENST00000448038 RIPK4P57078 832 aa9.39□□□□□ -0.91
SYNE1-213ENST00000448038 RUNDC1Q96C34 613 aa9.39□□□□□ -0.91
SYNE1-213ENST00000448038 RWDD1Q9H446 243 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-213ENST00000448038 RTEL1-TNFRSF6BF6WH68 1400 aa9.39□□□□□ -0.91
SYNE1-213ENST00000448038 HMOX1P09601 288 aa9.39□□□□□ -0.91
SYNE1-213ENST00000448038 KDM5BQ9UGL1 1544 aa9.39□□□□□ -0.91
SYNE1-213ENST00000448038 CFAP43Q8NDM7 1665 aa9.39□□□□□ -0.91
SYNE1-213ENST00000448038 TRAPPC8Q9Y2L5 1435 aa9.39□□□□□ -0.91
SYNE1-213ENST00000448038 ZNF518AQ6AHZ1 1483 aa9.38□□□□□ -0.91
SYNE1-213ENST00000448038 NGEFQ8N5V2 710 aa9.38□□□□□ -0.91
SYNE1-213ENST00000448038 BCL2L13Q9BXK5 485 aa9.38□□□□□ -0.91
SYNE1-213ENST00000448038 NBR1Q14596 966 aa9.38□□□□□ -0.91
SYNE1-213ENST00000448038 BRD4O60885 1362 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-213ENST00000448038 ADGRF5Q8IZF2 1346 aa9.38□□□□□ -0.91
SYNE1-213ENST00000448038 PPP2R1AP30153 589 aa9.37□□□□□ -0.91
SYNE1-213ENST00000448038 DUOX2Q9NRD8 1548 aa9.37□□□□□ -0.91
SYNE1-213ENST00000448038 ZNF692Q9BU19 519 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-213ENST00000448038 A2MP01023 1474 aa9.37□□□□□ -0.91
SYNE1-213ENST00000448038 FAM135AQ9P2D6 1515 aa9.36□□□□□ -0.91
SYNE1-213ENST00000448038 ANP32BQ92688 251 aaKnown RBP9.36□□□□□ -0.91
SYNE1-213ENST00000448038 RPRD2Q5VT52 1461 aaKnown RBP9.36□□□□□ -0.91
SYNE1-213ENST00000448038 KCNJ4P48050 445 aa9.36□□□□□ -0.91
SYNE1-213ENST00000448038 ADAMTS8Q9UP79 889 aa9.36□□□□□ -0.91
SYNE1-213ENST00000448038 TCOF1Q13428 1488 aaKnown RBP9.36□□□□□ -0.91
SYNE1-213ENST00000448038 WAPLQ7Z5K2 1190 aa9.36□□□□□ -0.91
SYNE1-213ENST00000448038 ATAD2Q6PL18 1390 aa9.36□□□□□ -0.91
SYNE1-213ENST00000448038 HDAC5Q9UQL6 1122 aa9.36□□□□□ -0.91
SYNE1-213ENST00000448038 RAPGEF4Q8WZA2 1011 aa9.35□□□□□ -0.91
SYNE1-213ENST00000448038 NLRP2Q9NX02 1062 aa9.35□□□□□ -0.91
SYNE1-213ENST00000448038 SAMD9Q5K651 1589 aa9.35□□□□□ -0.91
SYNE1-213ENST00000448038 PLIN1O60240 522 aa9.35□□□□□ -0.91
SYNE1-213ENST00000448038 ABCC10Q5T3U5 1492 aa9.34□□□□□ -0.91
SYNE1-213ENST00000448038 HMMRO75330 724 aa9.34□□□□□ -0.91
SYNE1-213ENST00000448038 CHMP3Q9Y3E7 222 aa9.34□□□□□ -0.91
SYNE1-213ENST00000448038 NOS1P29475 1434 aa9.34□□□□□ -0.91
SYNE1-213ENST00000448038 TTC5Q8N0Z6 440 aa9.34□□□□□ -0.91
SYNE1-213ENST00000448038 CCDC61Q9Y6R9 512 aa9.34□□□□□ -0.91
SYNE1-213ENST00000448038 ZKSCAN2Q63HK3 967 aa9.33□□□□□ -0.92
SYNE1-213ENST00000448038 NUDT16Q96DE0 195 aaKnown RBP9.33□□□□□ -0.92
SYNE1-213ENST00000448038 EIF2S2P20042 333 aaKnown RBP9.33□□□□□ -0.92
SYNE1-213ENST00000448038 MEX3CQ5U5Q3 659 aaKnown RBP9.33□□□□□ -0.92
SYNE1-213ENST00000448038 RRP1P56182 461 aaKnown RBP9.32□□□□□ -0.92
SYNE1-213ENST00000448038 FGD1P98174 961 aa9.32□□□□□ -0.92
SYNE1-213ENST00000448038 GNAI1P63096 354 aa9.32□□□□□ -0.92
SYNE1-213ENST00000448038 TAF7LQ5H9L4 462 aa9.32□□□□□ -0.92
SYNE1-213ENST00000448038 TCP11L2Q8N4U5 519 aa9.32□□□□□ -0.92
SYNE1-213ENST00000448038 TNRQ92752 1358 aa9.32□□□□□ -0.92
SYNE1-213ENST00000448038 TCERG1O14776 1098 aaKnown RBP9.32□□□□□ -0.92
SYNE1-213ENST00000448038 CFAP44Q96MT7 982 aa9.32□□□□□ -0.92
SYNE1-213ENST00000448038 NECTIN2Q92692 538 aa9.31□□□□□ -0.92
SYNE1-213ENST00000448038 SYTL4Q96C24 671 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-213ENST00000448038 AMOTL2Q9Y2J4 779 aa9.31□□□□□ -0.92
SYNE1-213ENST00000448038 TSPYL4Q9UJ04 414 aa9.31□□□□□ -0.92
SYNE1-213ENST00000448038 PRKAR2BP31323 418 aa9.31□□□□□ -0.92
SYNE1-213ENST00000448038 C14orf93Q9H972 538 aaKnown RBP9.31□□□□□ -0.92
SYNE1-213ENST00000448038 GOLGA6L22H0YM25 854 aa9.3□□□□□ -0.92
SYNE1-213ENST00000448038 SHANK2Q9UPX8 1470 aa9.3□□□□□ -0.92
SYNE1-213ENST00000448038 C11orf95C9JLR9 678 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-213ENST00000448038 NCLP19338 710 aaKnown RBP9.3□□□□□ -0.92
SYNE1-213ENST00000448038 COG6Q9Y2V7 657 aa9.3□□□□□ -0.92
SYNE1-213ENST00000448038 NSD3Q9BZ95 1437 aa9.3□□□□□ -0.92
SYNE1-213ENST00000448038 HSP90AB1P08238 724 aaKnown RBP9.29□□□□□ -0.92
SYNE1-213ENST00000448038 MCCP23508 829 aa9.29□□□□□ -0.92
SYNE1-213ENST00000448038 GTF2E1P29083 439 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-213ENST00000448038 XPCQ01831 940 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-213ENST00000448038 GORABQ5T7V8 394 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms