RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 PLA2R1Q13018 1463 aa16.06■□□□□ 0.16
CDH3-202ENST00000429102 SPAG9O60271 1321 aaKnown RBP16.05■□□□□ 0.16
CDH3-202ENST00000429102 CDCA8Q53HL2 280 aa16.05■□□□□ 0.16
CDH3-202ENST00000429102 GGT6Q6P531 493 aa16.05■□□□□ 0.16
CDH3-202ENST00000429102 CARD14Q9BXL6 1004 aa16.05■□□□□ 0.16
CDH3-202ENST00000429102 EFCAB2Q5VUJ9 269 aa16.05■□□□□ 0.16
CDH3-202ENST00000429102 STK26Q9P289 416 aa16.04■□□□□ 0.16
CDH3-202ENST00000429102 MAGI2Q86UL8 1455 aa16.04■□□□□ 0.16
CDH3-202ENST00000429102 U2AF1L5P0DN76 240 aaPredicted RBP16.04■□□□□ 0.16
CDH3-202ENST00000429102 U2AF1Q01081 240 aaKnown RBP eCLIP16.04■□□□□ 0.16
CDH3-202ENST00000429102 CCDC141Q6ZP82 1450 aa16.03■□□□□ 0.16
CDH3-202ENST00000429102 ADGRF5Q8IZF2 1346 aa16.03■□□□□ 0.16
CDH3-202ENST00000429102 CEP170Q5SW79 1584 aa16.02■□□□□ 0.16
CDH3-202ENST00000429102 RSPH4AQ5TD94 716 aa16.02■□□□□ 0.16
CDH3-202ENST00000429102 RLBP1P12271 317 aa16.02■□□□□ 0.16
CDH3-202ENST00000429102 MFAP1P55081 439 aaKnown RBP16.02■□□□□ 0.16
CDH3-202ENST00000429102 TSR2Q969E8 191 aaKnown RBP16.02■□□□□ 0.16
CDH3-202ENST00000429102 E9PSI1 815 aa16.02■□□□□ 0.15
CDH3-202ENST00000429102 TCP11L2Q8N4U5 519 aa16.02■□□□□ 0.15
CDH3-202ENST00000429102 WWC1Q8IX03 1113 aa16.01■□□□□ 0.15
CDH3-202ENST00000429102 SYCP2Q9BX26 1530 aa16.01■□□□□ 0.15
CDH3-202ENST00000429102 WASHC2CQ9Y4E1 1318 aa16.01■□□□□ 0.15
CDH3-202ENST00000429102 SYNJ2O15056 1496 aa16.01■□□□□ 0.15
CDH3-202ENST00000429102 FTSJ3Q8IY81 847 aaKnown RBP16■□□□□ 0.15
CDH3-202ENST00000429102 FOXD4L1Q9NU39 408 aa16■□□□□ 0.15
CDH3-202ENST00000429102 COL17A1Q9UMD9 1497 aaPredicted RBP16■□□□□ 0.15
CDH3-202ENST00000429102 MTHFSP49914 203 aa16■□□□□ 0.15
CDH3-202ENST00000429102 UPF2Q9HAU5 1272 aaKnown RBP16■□□□□ 0.15
CDH3-202ENST00000429102 PCDHB15Q9Y5E8 787 aa16■□□□□ 0.15
CDH3-202ENST00000429102 EIF4G3O43432 1585 aaKnown RBP16■□□□□ 0.15
CDH3-202ENST00000429102 ABCC10Q5T3U5 1492 aa15.99■□□□□ 0.15
CDH3-202ENST00000429102 PDZRN3Q9UPQ7 1066 aa15.98■□□□□ 0.15
CDH3-202ENST00000429102 ARHGEF12Q9NZN5 1544 aa15.97■□□□□ 0.15
CDH3-202ENST00000429102 BECN1Q14457 450 aa15.97■□□□□ 0.15
CDH3-202ENST00000429102 BLMP54132 1417 aaPredicted RBP15.97■□□□□ 0.15
CDH3-202ENST00000429102 ITSN2Q9NZM3 1697 aa15.96■□□□□ 0.15
CDH3-202ENST00000429102 KDM5DQ9BY66 1539 aa15.96■□□□□ 0.14
CDH3-202ENST00000429102 ITPRIPQ8IWB1 547 aa15.95■□□□□ 0.14
CDH3-202ENST00000429102 ELL2O00472 640 aaPredicted RBP15.95■□□□□ 0.14
CDH3-202ENST00000429102 FBLN1P23142 703 aa15.95■□□□□ 0.14
CDH3-202ENST00000429102 ZNF521Q96K83 1311 aa15.94■□□□□ 0.14
CDH3-202ENST00000429102 CABP2Q9NPB3 220 aa15.94■□□□□ 0.14
CDH3-202ENST00000429102 ADGBQ8N7X0 1667 aa15.94■□□□□ 0.14
CDH3-202ENST00000429102 SMC4Q9NTJ3 1288 aa15.93■□□□□ 0.14
CDH3-202ENST00000429102 POLR1AO95602 1720 aaPredicted RBP15.93■□□□□ 0.14
CDH3-202ENST00000429102 GGNBP2Q9H3C7 697 aa15.92■□□□□ 0.14
CDH3-202ENST00000429102 RARSP54136 660 aaKnown RBP15.92■□□□□ 0.14
CDH3-202ENST00000429102 DNAJC5Q9H3Z4 198 aa15.92■□□□□ 0.14
CDH3-202ENST00000429102 TRAPPC8Q9Y2L5 1435 aa15.92■□□□□ 0.14
CDH3-202ENST00000429102 CGNL1Q0VF96 1302 aa15.92■□□□□ 0.14
CDH3-202ENST00000429102 CDC42BPAQ5VT25 1732 aa15.91■□□□□ 0.14
CDH3-202ENST00000429102 ZMYM4Q5VZL5 1548 aa15.91■□□□□ 0.14
CDH3-202ENST00000429102 GPRASP1Q5JY77 1395 aa15.91■□□□□ 0.14
CDH3-202ENST00000429102 WDR7Q9Y4E6 1490 aa15.9■□□□□ 0.14
CDH3-202ENST00000429102 SRPK2P78362 688 aaKnown RBP15.9■□□□□ 0.14
CDH3-202ENST00000429102 NKTRP30414 1462 aaKnown RBP15.89■□□□□ 0.14
CDH3-202ENST00000429102 EXOSC9Q06265 439 aaKnown RBP15.88■□□□□ 0.13
CDH3-202ENST00000429102 TBC1D2Q9BYX2 928 aa15.88■□□□□ 0.13
CDH3-202ENST00000429102 USP19O94966 1318 aa15.88■□□□□ 0.13
CDH3-202ENST00000429102 SAMD9LQ8IVG5 1584 aa15.88■□□□□ 0.13
CDH3-202ENST00000429102 RUNDC1Q96C34 613 aa15.88■□□□□ 0.13
CDH3-202ENST00000429102 CFAP53Q96M91 514 aa15.88■□□□□ 0.13
CDH3-202ENST00000429102 SCAPERQ9BY12 1400 aa15.88■□□□□ 0.13
CDH3-202ENST00000429102 SHANK2Q9UPX8 1470 aa15.87■□□□□ 0.13
CDH3-202ENST00000429102 HSP90AA1P07900 732 aaKnown RBP15.87■□□□□ 0.13
CDH3-202ENST00000429102 LNPKQ9C0E8 428 aa15.87■□□□□ 0.13
CDH3-202ENST00000429102 C1orf115Q9H7X2 142 aa15.87■□□□□ 0.13
CDH3-202ENST00000429102 RWDD1Q9H446 243 aaPredicted RBP15.87■□□□□ 0.13
CDH3-202ENST00000429102 PDE3AQ14432 1141 aa15.86■□□□□ 0.13
CDH3-202ENST00000429102 APBB1O00213 710 aa15.86■□□□□ 0.13
CDH3-202ENST00000429102 PANK2Q9BZ23 570 aa15.86■□□□□ 0.13
CDH3-202ENST00000429102 NSD3Q9BZ95 1437 aa15.85■□□□□ 0.13
CDH3-202ENST00000429102 PMFBP1Q8TBY8 1022 aa15.85■□□□□ 0.13
CDH3-202ENST00000429102 NAP1L5Q96NT1 182 aaPredicted RBP15.85■□□□□ 0.13
CDH3-202ENST00000429102 NUP160Q12769 1436 aa15.85■□□□□ 0.13
CDH3-202ENST00000429102 MAPK8IP3Q9UPT6 1336 aa15.85■□□□□ 0.13
CDH3-202ENST00000429102 TRPM1Q7Z4N2 1603 aa15.85■□□□□ 0.13
CDH3-202ENST00000429102 EIF3AQ14152 1382 aaKnown RBP15.84■□□□□ 0.13
CDH3-202ENST00000429102 TRMT2AQ8IZ69 625 aaKnown RBP15.84■□□□□ 0.13
CDH3-202ENST00000429102 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.84■□□□□ 0.13
CDH3-202ENST00000429102 DZIP1LQ8IYY4 767 aaKnown RBP15.83■□□□□ 0.13
CDH3-202ENST00000429102 THUMPD2Q9BTF0 503 aaKnown RBP15.83■□□□□ 0.13
CDH3-202ENST00000429102 KANK1Q14678 1352 aa15.83■□□□□ 0.13
CDH3-202ENST00000429102 MINK1Q8N4C8 1332 aaPredicted RBP15.83■□□□□ 0.12
CDH3-202ENST00000429102 ABCA8O94911 1581 aa15.83■□□□□ 0.12
CDH3-202ENST00000429102 SCAF11Q99590 1463 aaKnown RBP15.82■□□□□ 0.12
CDH3-202ENST00000429102 ZKSCAN2Q63HK3 967 aa15.82■□□□□ 0.12
CDH3-202ENST00000429102 C22orf23Q9BZE7 217 aa15.82■□□□□ 0.12
CDH3-202ENST00000429102 CROCC2H7BZ55 1655 aa15.82■□□□□ 0.12
CDH3-202ENST00000429102 ASXL1Q8IXJ9 1541 aa15.81■□□□□ 0.12
CDH3-202ENST00000429102 NOB1Q9ULX3 412 aaKnown RBP15.81■□□□□ 0.12
CDH3-202ENST00000429102 UGGT1Q9NYU2 1555 aa15.81■□□□□ 0.12
CDH3-202ENST00000429102 ADCY10Q96PN6 1610 aa15.81■□□□□ 0.12
CDH3-202ENST00000429102 SSH1Q8WYL5 1049 aa15.8■□□□□ 0.12
CDH3-202ENST00000429102 HMOX1P09601 288 aa15.8■□□□□ 0.12
CDH3-202ENST00000429102 TPRNQ4KMQ1 711 aa15.8■□□□□ 0.12
CDH3-202ENST00000429102 MYH16Q9H6N6 1097 aa15.8■□□□□ 0.12
CDH3-202ENST00000429102 RIPK4P57078 832 aa15.79■□□□□ 0.12
CDH3-202ENST00000429102 PRDM15P57071 1507 aaPredicted RBP15.79■□□□□ 0.12
CDH3-202ENST00000429102 TTC37Q6PGP7 1564 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms