RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 PPM1GO15355 546 aaPredicted RBP11.16□□□□□ -0.62
CD44-208ENST00000428726 SLC24A1O60721 1099 aa11.16□□□□□ -0.62
CD44-208ENST00000428726 ERICH6BQ5W0A0 696 aa11.16□□□□□ -0.62
CD44-208ENST00000428726 ABCA9Q8IUA7 1624 aa11.16□□□□□ -0.62
CD44-208ENST00000428726 FAM69CQ0P6D2 419 aa11.16□□□□□ -0.62
CD44-208ENST00000428726 CABP2Q9NPB3 220 aa11.16□□□□□ -0.62
CD44-208ENST00000428726 STAG3Q9UJ98 1225 aa11.16□□□□□ -0.62
CD44-208ENST00000428726 E9PCH4 1651 aa11.16□□□□□ -0.62
CD44-208ENST00000428726 WDR43Q15061 677 aaKnown RBP eCLIP11.15□□□□□ -0.62
CD44-208ENST00000428726 NLRP13Q86W25 1043 aa11.15□□□□□ -0.62
CD44-208ENST00000428726 PRDM15P57071 1507 aaPredicted RBP11.15□□□□□ -0.62
CD44-208ENST00000428726 ADGRL1O94910 1474 aa11.15□□□□□ -0.62
CD44-208ENST00000428726 RALBP1Q15311 655 aa11.14□□□□□ -0.63
CD44-208ENST00000428726 APAF1O14727 1248 aa11.14□□□□□ -0.63
CD44-208ENST00000428726 BCL2L13Q9BXK5 485 aa11.14□□□□□ -0.63
CD44-208ENST00000428726 DEPDC5O75140 1603 aa11.13□□□□□ -0.63
CD44-208ENST00000428726 ATP7AQ04656 1500 aa11.13□□□□□ -0.63
CD44-208ENST00000428726 RCAN3Q9UKA8 241 aa11.13□□□□□ -0.63
CD44-208ENST00000428726 DMRT2Q9Y5R5 561 aa11.13□□□□□ -0.63
CD44-208ENST00000428726 INO80Q9ULG1 1556 aaPredicted RBP11.13□□□□□ -0.63
CD44-208ENST00000428726 PPP2R1AP30153 589 aa11.13□□□□□ -0.63
CD44-208ENST00000428726 CARD14Q9BXL6 1004 aa11.13□□□□□ -0.63
CD44-208ENST00000428726 SPINK5Q9NQ38 1064 aaPredicted RBP11.13□□□□□ -0.63
CD44-208ENST00000428726 MINK1Q8N4C8 1332 aaPredicted RBP11.13□□□□□ -0.63
CD44-208ENST00000428726 KANK1Q14678 1352 aa11.12□□□□□ -0.63
CD44-208ENST00000428726 SOX12O15370 315 aa11.12□□□□□ -0.63
CD44-208ENST00000428726 STAC3Q96MF2 364 aa11.12□□□□□ -0.63
CD44-208ENST00000428726 TRPM2O94759 1503 aa11.12□□□□□ -0.63
CD44-208ENST00000428726 BRD4O60885 1362 aaPredicted RBP11.12□□□□□ -0.63
CD44-208ENST00000428726 COL17A1Q9UMD9 1497 aaPredicted RBP11.12□□□□□ -0.63
CD44-208ENST00000428726 PTPRTO14522 1441 aa11.11□□□□□ -0.63
CD44-208ENST00000428726 TET3O43151 1660 aa11.11□□□□□ -0.63
CD44-208ENST00000428726 SPHKAPQ2M3C7 1700 aa11.11□□□□□ -0.63
CD44-208ENST00000428726 CD109Q6YHK3 1445 aa11.1□□□□□ -0.63
CD44-208ENST00000428726 IDI1Q13907 227 aa11.1□□□□□ -0.63
CD44-208ENST00000428726 RNF17Q9BXT8 1623 aaKnown RBP11.1□□□□□ -0.63
CD44-208ENST00000428726 CEP152O94986 1710 aa11.1□□□□□ -0.63
CD44-208ENST00000428726 SRPK2P78362 688 aaKnown RBP11.1□□□□□ -0.63
CD44-208ENST00000428726 VWDEQ8N2E2 1590 aa11.1□□□□□ -0.63
CD44-208ENST00000428726 SMG6Q86US8 1419 aaKnown RBP11.09□□□□□ -0.63
CD44-208ENST00000428726 CRBNQ96SW2 442 aa11.09□□□□□ -0.63
CD44-208ENST00000428726 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.09□□□□□ -0.63
CD44-208ENST00000428726 GGNBP2Q9H3C7 697 aa11.09□□□□□ -0.63
CD44-208ENST00000428726 MADDQ8WXG6 1647 aa11.08□□□□□ -0.64
CD44-208ENST00000428726 FRAT1Q92837 279 aaPredicted RBP11.08□□□□□ -0.64
CD44-208ENST00000428726 LRPPRCP42704 1394 aaKnown RBP11.08□□□□□ -0.64
CD44-208ENST00000428726 NOS1P29475 1434 aa11.08□□□□□ -0.64
CD44-208ENST00000428726 NCKAP5LQ9HCH0 1330 aa11.08□□□□□ -0.64
CD44-208ENST00000428726 PARD3Q8TEW0 1356 aa11.08□□□□□ -0.64
CD44-208ENST00000428726 CLTCL1P53675 1640 aa11.08□□□□□ -0.64
CD44-208ENST00000428726 BCAR3O75815 825 aa11.07□□□□□ -0.64
CD44-208ENST00000428726 PAK3O75914 559 aaPredicted RBP11.07□□□□□ -0.64
CD44-208ENST00000428726 AMER1Q5JTC6 1135 aaPredicted RBP11.07□□□□□ -0.64
CD44-208ENST00000428726 U2SURPO15042 1029 aaKnown RBP11.07□□□□□ -0.64
CD44-208ENST00000428726 RRP1P56182 461 aaKnown RBP11.07□□□□□ -0.64
CD44-208ENST00000428726 WAPLQ7Z5K2 1190 aa11.07□□□□□ -0.64
CD44-208ENST00000428726 CLUAP1Q96AJ1 413 aa11.07□□□□□ -0.64
CD44-208ENST00000428726 MORC1Q86VD1 984 aa11.06□□□□□ -0.64
CD44-208ENST00000428726 NEURL4Q96JN8 1562 aa11.06□□□□□ -0.64
CD44-208ENST00000428726 RGS3P49796 1198 aa11.06□□□□□ -0.64
CD44-208ENST00000428726 TNNQ9UQP3 1299 aa11.06□□□□□ -0.64
CD44-208ENST00000428726 IQGAP1P46940 1657 aa11.05□□□□□ -0.64
CD44-208ENST00000428726 POGKQ9P215 609 aa11.05□□□□□ -0.64
CD44-208ENST00000428726 ZNF518AQ6AHZ1 1483 aa11.05□□□□□ -0.64
CD44-208ENST00000428726 MROH1Q8NDA8 1641 aa11.04□□□□□ -0.64
CD44-208ENST00000428726 TCERG1O14776 1098 aaKnown RBP11.04□□□□□ -0.64
CD44-208ENST00000428726 SLC4A3P48751 1232 aa11.04□□□□□ -0.64
CD44-208ENST00000428726 CEBPAP49715 358 aaPredicted RBP11.04□□□□□ -0.64
CD44-208ENST00000428726 RBM33Q96EV2 1170 aaKnown RBP11.04□□□□□ -0.64
CD44-208ENST00000428726 KIDINS220Q9ULH0 1771 aa11.04□□□□□ -0.64
CD44-208ENST00000428726 SCAF11Q99590 1463 aaKnown RBP11.04□□□□□ -0.64
CD44-208ENST00000428726 CFAP74Q9C0B2 1584 aa11.03□□□□□ -0.64
CD44-208ENST00000428726 PLEKHH1Q9ULM0 1364 aa11.03□□□□□ -0.64
CD44-208ENST00000428726 MTHFSP49914 203 aa11.03□□□□□ -0.64
CD44-208ENST00000428726 CDCA8Q53HL2 280 aa11.03□□□□□ -0.64
CD44-208ENST00000428726 CENPJQ9HC77 1338 aaPredicted RBP11.03□□□□□ -0.64
CD44-208ENST00000428726 YEATS2Q9ULM3 1422 aa11.03□□□□□ -0.64
CD44-208ENST00000428726 KIAA1210Q9ULL0 1709 aa11.03□□□□□ -0.64
CD44-208ENST00000428726 ADRA2BP18089 450 aa11.02□□□□□ -0.65
CD44-208ENST00000428726 PRAM1Q96QH2 718 aa11.02□□□□□ -0.65
CD44-208ENST00000428726 EFCAB6Q5THR3 1501 aa11.02□□□□□ -0.65
CD44-208ENST00000428726 LAS1LQ9Y4W2 734 aaKnown RBP11.02□□□□□ -0.65
CD44-208ENST00000428726 U2AF1L5P0DN76 240 aaPredicted RBP11.01□□□□□ -0.65
CD44-208ENST00000428726 CANXP27824 592 aaKnown RBP11.01□□□□□ -0.65
CD44-208ENST00000428726 U2AF1Q01081 240 aaKnown RBP eCLIP11.01□□□□□ -0.65
CD44-208ENST00000428726 LMTK2Q8IWU2 1503 aa11.01□□□□□ -0.65
CD44-208ENST00000428726 RNF123Q5XPI4 1314 aa11.01□□□□□ -0.65
CD44-208ENST00000428726 EIF3AQ14152 1382 aaKnown RBP11.01□□□□□ -0.65
CD44-208ENST00000428726 ZRANB1Q9UGI0 708 aa11.01□□□□□ -0.65
CD44-208ENST00000428726 KIF1BO60333 1816 aa11□□□□□ -0.65
CD44-208ENST00000428726 INSRP06213 1382 aa11□□□□□ -0.65
CD44-208ENST00000428726 MYOM2P54296 1465 aa11□□□□□ -0.65
CD44-208ENST00000428726 PANK1Q8TE04 598 aa11□□□□□ -0.65
CD44-208ENST00000428726 POGZQ7Z3K3 1410 aa10.99□□□□□ -0.65
CD44-208ENST00000428726 ELL2O00472 640 aaPredicted RBP10.99□□□□□ -0.65
CD44-208ENST00000428726 MLH3Q9UHC1 1453 aa10.99□□□□□ -0.65
CD44-208ENST00000428726 ZMYM4Q5VZL5 1548 aa10.99□□□□□ -0.65
CD44-208ENST00000428726 MAP3K4Q9Y6R4 1608 aa10.99□□□□□ -0.65
CD44-208ENST00000428726 TSR2Q969E8 191 aaKnown RBP10.99□□□□□ -0.65
CD44-208ENST00000428726 PPRC1Q5VV67 1664 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms