RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 HECW1Q76N89 1606 aa13.62□□□□□ -0.23
TCOF1-204ENST00000427724 NLRP13Q86W25 1043 aa13.62□□□□□ -0.23
TCOF1-204ENST00000427724 ZBED9Q6R2W3 1325 aa13.62□□□□□ -0.23
TCOF1-204ENST00000427724 DDX54Q8TDD1 881 aaKnown RBP13.61□□□□□ -0.23
TCOF1-204ENST00000427724 EIF4G3O43432 1585 aaKnown RBP13.61□□□□□ -0.23
TCOF1-204ENST00000427724 ATP10BO94823 1461 aa13.61□□□□□ -0.23
TCOF1-204ENST00000427724 CUL7Q14999 1698 aa13.61□□□□□ -0.23
TCOF1-204ENST00000427724 CCDC7Q96M83 1385 aa13.61□□□□□ -0.23
TCOF1-204ENST00000427724 STAC3Q96MF2 364 aa13.6□□□□□ -0.23
TCOF1-204ENST00000427724 KIF7Q2M1P5 1343 aa13.6□□□□□ -0.23
TCOF1-204ENST00000427724 CADPS2Q86UW7 1296 aa13.6□□□□□ -0.23
TCOF1-204ENST00000427724 WDR7Q9Y4E6 1490 aa13.59□□□□□ -0.23
TCOF1-204ENST00000427724 CDK19Q9BWU1 502 aa13.59□□□□□ -0.23
TCOF1-204ENST00000427724 STK31Q9BXU1 1019 aa13.59□□□□□ -0.23
TCOF1-204ENST00000427724 CABP1Q9NZU7 370 aa13.59□□□□□ -0.23
TCOF1-204ENST00000427724 RCAN3Q9UKA8 241 aa13.59□□□□□ -0.23
TCOF1-204ENST00000427724 TNRQ92752 1358 aa13.59□□□□□ -0.23
TCOF1-204ENST00000427724 NBPF1Q3BBV0 1214 aa13.58□□□□□ -0.24
TCOF1-204ENST00000427724 ELL2O00472 640 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-204ENST00000427724 RGS3P49796 1198 aa13.58□□□□□ -0.24
TCOF1-204ENST00000427724 TAF7LQ5H9L4 462 aa13.58□□□□□ -0.24
TCOF1-204ENST00000427724 CCDC146Q8IYE0 955 aa13.58□□□□□ -0.24
TCOF1-204ENST00000427724 UPF2Q9HAU5 1272 aaKnown RBP13.58□□□□□ -0.24
TCOF1-204ENST00000427724 MIA2Q96PC5 1412 aa13.57□□□□□ -0.24
TCOF1-204ENST00000427724 HFM1A2PYH4 1435 aa13.57□□□□□ -0.24
TCOF1-204ENST00000427724 CCDC141Q6ZP82 1450 aa13.57□□□□□ -0.24
TCOF1-204ENST00000427724 BIVM-ERCC5R4GMW8 1640 aa13.57□□□□□ -0.24
TCOF1-204ENST00000427724 CNTLNQ9NXG0 1405 aa13.57□□□□□ -0.24
TCOF1-204ENST00000427724 PCF11O94913 1555 aaKnown RBP13.57□□□□□ -0.24
TCOF1-204ENST00000427724 LMTK3Q96Q04 1460 aa13.56□□□□□ -0.24
TCOF1-204ENST00000427724 USP47Q96K76 1375 aa13.56□□□□□ -0.24
TCOF1-204ENST00000427724 HSP90AA1P07900 732 aaKnown RBP13.56□□□□□ -0.24
TCOF1-204ENST00000427724 RRP7AQ9Y3A4 280 aaKnown RBP13.56□□□□□ -0.24
TCOF1-204ENST00000427724 NBPF8Q3BBV2 869 aa13.56□□□□□ -0.24
TCOF1-204ENST00000427724 ISY1Q9ULR0 285 aaKnown RBP13.56□□□□□ -0.24
TCOF1-204ENST00000427724 MAPKBP1O60336 1514 aa13.56□□□□□ -0.24
TCOF1-204ENST00000427724 IPO9Q96P70 1041 aaKnown RBP13.56□□□□□ -0.24
TCOF1-204ENST00000427724 TAOK2Q9UL54 1235 aa13.56□□□□□ -0.24
TCOF1-204ENST00000427724 CALD1Q05682 793 aaKnown RBP13.55□□□□□ -0.24
TCOF1-204ENST00000427724 EIF2S2P20042 333 aaKnown RBP13.55□□□□□ -0.24
TCOF1-204ENST00000427724 ERBINQ96RT1 1412 aa13.55□□□□□ -0.24
TCOF1-204ENST00000427724 EHBP1L1Q8N3D4 1523 aa13.54□□□□□ -0.24
TCOF1-204ENST00000427724 RALBP1Q15311 655 aa13.54□□□□□ -0.24
TCOF1-204ENST00000427724 RBM42Q9BTD8 480 aaKnown RBP13.54□□□□□ -0.24
TCOF1-204ENST00000427724 NAIPQ13075 1403 aa13.54□□□□□ -0.24
TCOF1-204ENST00000427724 SLC12A5Q9H2X9 1139 aa13.54□□□□□ -0.24
TCOF1-204ENST00000427724 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.54□□□□□ -0.24
TCOF1-204ENST00000427724 DHX29Q7Z478 1369 aaKnown RBP13.53□□□□□ -0.24
TCOF1-204ENST00000427724 SLC4A10Q6U841 1118 aa13.53□□□□□ -0.24
TCOF1-204ENST00000427724 DDRGK1Q96HY6 314 aa13.53□□□□□ -0.24
TCOF1-204ENST00000427724 APBB1O00213 710 aa13.53□□□□□ -0.24
TCOF1-204ENST00000427724 FRAT2O75474 233 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-204ENST00000427724 HMOX1P09601 288 aa13.53□□□□□ -0.24
TCOF1-204ENST00000427724 C8orf37Q96NL8 207 aa13.53□□□□□ -0.24
TCOF1-204ENST00000427724 CHMP4AQ9BY43 222 aa13.53□□□□□ -0.24
TCOF1-204ENST00000427724 PHF8Q9UPP1 1060 aa13.53□□□□□ -0.24
TCOF1-204ENST00000427724 PLCH2O75038 1416 aa13.52□□□□□ -0.24
TCOF1-204ENST00000427724 ABCC2Q92887 1545 aa13.52□□□□□ -0.25
TCOF1-204ENST00000427724 NECTIN2Q92692 538 aa13.52□□□□□ -0.25
TCOF1-204ENST00000427724 MSH6P52701 1360 aa13.52□□□□□ -0.25
TCOF1-204ENST00000427724 IL27Q8NEV9 243 aa13.52□□□□□ -0.25
TCOF1-204ENST00000427724 RPGRIP1LQ68CZ1 1315 aa13.51□□□□□ -0.25
TCOF1-204ENST00000427724 DIAPH1O60610 1272 aaKnown RBP13.51□□□□□ -0.25
TCOF1-204ENST00000427724 CCDC61Q9Y6R9 512 aa13.51□□□□□ -0.25
TCOF1-204ENST00000427724 DAPK1P53355 1430 aa13.51□□□□□ -0.25
TCOF1-204ENST00000427724 NUP160Q12769 1436 aa13.51□□□□□ -0.25
TCOF1-204ENST00000427724 RTEL1-TNFRSF6BF6WH68 1400 aa13.51□□□□□ -0.25
TCOF1-204ENST00000427724 NUDT16Q96DE0 195 aaKnown RBP13.51□□□□□ -0.25
TCOF1-204ENST00000427724 C11orf95C9JLR9 678 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-204ENST00000427724 EXOC6Q8TAG9 804 aa13.5□□□□□ -0.25
TCOF1-204ENST00000427724 LMOD3Q0VAK6 560 aa13.5□□□□□ -0.25
TCOF1-204ENST00000427724 MAP3K1Q13233 1512 aa13.5□□□□□ -0.25
TCOF1-204ENST00000427724 KIF14Q15058 1648 aa13.49□□□□□ -0.25
TCOF1-204ENST00000427724 TATP17735 454 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-204ENST00000427724 FAM177BA6PVY3 158 aa13.49□□□□□ -0.25
TCOF1-204ENST00000427724 GORABQ5T7V8 394 aa13.49□□□□□ -0.25
TCOF1-204ENST00000427724 NAP1L5Q96NT1 182 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-204ENST00000427724 PLIN1O60240 522 aa13.49□□□□□ -0.25
TCOF1-204ENST00000427724 KRT28Q7Z3Y7 464 aa13.49□□□□□ -0.25
TCOF1-204ENST00000427724 ZNF692Q9BU19 519 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-204ENST00000427724 ZMYM3Q14202 1370 aa13.48□□□□□ -0.25
TCOF1-204ENST00000427724 MYBBP1AQ9BQG0 1328 aaKnown RBP13.48□□□□□ -0.25
TCOF1-204ENST00000427724 TCERG1O14776 1098 aaKnown RBP13.47□□□□□ -0.25
TCOF1-204ENST00000427724 ANKRD30BQ9BXX2 1392 aa13.47□□□□□ -0.25
TCOF1-204ENST00000427724 FAM135AQ9P2D6 1515 aa13.47□□□□□ -0.25
TCOF1-204ENST00000427724 CAMSAP2Q08AD1 1489 aa13.46□□□□□ -0.26
TCOF1-204ENST00000427724 TRAPPC8Q9Y2L5 1435 aa13.46□□□□□ -0.26
TCOF1-204ENST00000427724 ADAMTS12P58397 1594 aa13.45□□□□□ -0.26
TCOF1-204ENST00000427724 RRP1P56182 461 aaKnown RBP13.45□□□□□ -0.26
TCOF1-204ENST00000427724 CHRNA2Q15822 529 aa13.45□□□□□ -0.26
TCOF1-204ENST00000427724 CEP170Q5SW79 1584 aa13.45□□□□□ -0.26
TCOF1-204ENST00000427724 UHRF1BP1Q6BDS2 1440 aa13.44□□□□□ -0.26
TCOF1-204ENST00000427724 ZNF518AQ6AHZ1 1483 aa13.44□□□□□ -0.26
TCOF1-204ENST00000427724 UHRF1BP1LA0JNW5 1464 aa13.44□□□□□ -0.26
TCOF1-204ENST00000427724 A2MP01023 1474 aa13.44□□□□□ -0.26
TCOF1-204ENST00000427724 PTPRKQ15262 1439 aa13.43□□□□□ -0.26
TCOF1-204ENST00000427724 ADGRF5Q8IZF2 1346 aa13.43□□□□□ -0.26
TCOF1-204ENST00000427724 TULP1O00294 542 aaPredicted RBP13.43□□□□□ -0.26
TCOF1-204ENST00000427724 NUP153P49790 1475 aaKnown RBP13.43□□□□□ -0.26
TCOF1-204ENST00000427724 CHMP4BQ9H444 224 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms