RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 APAF1O14727 1248 aa15.87■□□□□ 0.13
PTPRN-204ENST00000423636 CLTCL1P53675 1640 aa15.86■□□□□ 0.13
PTPRN-204ENST00000423636 COL17A1Q9UMD9 1497 aaPredicted RBP15.86■□□□□ 0.13
PTPRN-204ENST00000423636 PLXNC1O60486 1568 aa15.86■□□□□ 0.13
PTPRN-204ENST00000423636 STAG3Q9UJ98 1225 aa15.86■□□□□ 0.13
PTPRN-204ENST00000423636 IDI1Q13907 227 aa15.85■□□□□ 0.13
PTPRN-204ENST00000423636 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
PTPRN-204ENST00000423636 DMRT2Q9Y5R5 561 aa15.85■□□□□ 0.13
PTPRN-204ENST00000423636 GPRASP1Q5JY77 1395 aa15.85■□□□□ 0.13
PTPRN-204ENST00000423636 SMG6Q86US8 1419 aaKnown RBP15.85■□□□□ 0.13
PTPRN-204ENST00000423636 RRP1P56182 461 aaKnown RBP15.84■□□□□ 0.13
PTPRN-204ENST00000423636 POLR1AO95602 1720 aaPredicted RBP15.84■□□□□ 0.13
PTPRN-204ENST00000423636 MINK1Q8N4C8 1332 aaPredicted RBP15.83■□□□□ 0.12
PTPRN-204ENST00000423636 PRDM15P57071 1507 aaPredicted RBP15.83■□□□□ 0.12
PTPRN-204ENST00000423636 LRPPRCP42704 1394 aaKnown RBP15.82■□□□□ 0.12
PTPRN-204ENST00000423636 CRBNQ96SW2 442 aa15.82■□□□□ 0.12
PTPRN-204ENST00000423636 YEATS2Q9ULM3 1422 aa15.81■□□□□ 0.12
PTPRN-204ENST00000423636 NUTM2FA1L443 756 aa15.8■□□□□ 0.12
PTPRN-204ENST00000423636 PPM1GO15355 546 aaPredicted RBP15.8■□□□□ 0.12
PTPRN-204ENST00000423636 SRPK2P78362 688 aaKnown RBP15.8■□□□□ 0.12
PTPRN-204ENST00000423636 CENPJQ9HC77 1338 aaPredicted RBP15.8■□□□□ 0.12
PTPRN-204ENST00000423636 PLEKHH1Q9ULM0 1364 aa15.79■□□□□ 0.12
PTPRN-204ENST00000423636 NPATQ14207 1427 aa15.79■□□□□ 0.12
PTPRN-204ENST00000423636 BCL2L13Q9BXK5 485 aa15.79■□□□□ 0.12
PTPRN-204ENST00000423636 RTEL1-TNFRSF6BF6WH68 1400 aa15.79■□□□□ 0.12
PTPRN-204ENST00000423636 MORC1Q86VD1 984 aa15.79■□□□□ 0.12
PTPRN-204ENST00000423636 ERICH6Q7L0X2 663 aa15.78■□□□□ 0.12
PTPRN-204ENST00000423636 SCAF11Q99590 1463 aaKnown RBP15.78■□□□□ 0.12
PTPRN-204ENST00000423636 BCAR3O75815 825 aa15.77■□□□□ 0.11
PTPRN-204ENST00000423636 GGNBP2Q9H3C7 697 aa15.77■□□□□ 0.11
PTPRN-204ENST00000423636 ANP32EQ9BTT0 268 aa15.76■□□□□ 0.11
PTPRN-204ENST00000423636 CEP152O94986 1710 aa15.76■□□□□ 0.11
PTPRN-204ENST00000423636 KIDINS220Q9ULH0 1771 aa15.76■□□□□ 0.11
PTPRN-204ENST00000423636 PTPRTO14522 1441 aa15.75■□□□□ 0.11
PTPRN-204ENST00000423636 CDCA8Q53HL2 280 aa15.75■□□□□ 0.11
PTPRN-204ENST00000423636 ZNF518AQ6AHZ1 1483 aa15.75■□□□□ 0.11
PTPRN-204ENST00000423636 TRPM2O94759 1503 aa15.75■□□□□ 0.11
PTPRN-204ENST00000423636 MADDQ8WXG6 1647 aa15.75■□□□□ 0.11
PTPRN-204ENST00000423636 WAPLQ7Z5K2 1190 aa15.74■□□□□ 0.11
PTPRN-204ENST00000423636 SPHKAPQ2M3C7 1700 aa15.74■□□□□ 0.11
PTPRN-204ENST00000423636 NBR1Q14596 966 aa15.74■□□□□ 0.11
PTPRN-204ENST00000423636 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.74■□□□□ 0.11
PTPRN-204ENST00000423636 BCL11AQ9H165 835 aa15.74■□□□□ 0.11
PTPRN-204ENST00000423636 POGKQ9P215 609 aa15.74■□□□□ 0.11
PTPRN-204ENST00000423636 MTHFSP49914 203 aa15.73■□□□□ 0.11
PTPRN-204ENST00000423636 ABCA9Q8IUA7 1624 aa15.73■□□□□ 0.11
PTPRN-204ENST00000423636 FRAT1Q92837 279 aaPredicted RBP15.73■□□□□ 0.11
PTPRN-204ENST00000423636 U2SURPO15042 1029 aaKnown RBP15.73■□□□□ 0.11
PTPRN-204ENST00000423636 PRAM1Q96QH2 718 aa15.72■□□□□ 0.11
PTPRN-204ENST00000423636 NCKAP5LQ9HCH0 1330 aa15.72■□□□□ 0.11
PTPRN-204ENST00000423636 PAK3O75914 559 aaPredicted RBP15.72■□□□□ 0.11
PTPRN-204ENST00000423636 POGZQ7Z3K3 1410 aa15.71■□□□□ 0.11
PTPRN-204ENST00000423636 TSPOAP1O95153 1857 aa15.71■□□□□ 0.11
PTPRN-204ENST00000423636 PPRC1Q5VV67 1664 aaKnown RBP15.71■□□□□ 0.11
PTPRN-204ENST00000423636 NSD3Q9BZ95 1437 aa15.71■□□□□ 0.11
PTPRN-204ENST00000423636 C14orf93Q9H972 538 aaKnown RBP15.71■□□□□ 0.11
PTPRN-204ENST00000423636 EIF3AQ14152 1382 aaKnown RBP15.71■□□□□ 0.11
PTPRN-204ENST00000423636 INO80Q9ULG1 1556 aaPredicted RBP15.71■□□□□ 0.11
PTPRN-204ENST00000423636 GOLGA2Q08379 1002 aa15.7■□□□□ 0.1
PTPRN-204ENST00000423636 MROH1Q8NDA8 1641 aa15.7■□□□□ 0.1
PTPRN-204ENST00000423636 SOX12O15370 315 aa15.7■□□□□ 0.1
PTPRN-204ENST00000423636 TNNQ9UQP3 1299 aa15.7■□□□□ 0.1
PTPRN-204ENST00000423636 RGS3P49796 1198 aa15.7■□□□□ 0.1
PTPRN-204ENST00000423636 CLUAP1Q96AJ1 413 aa15.7■□□□□ 0.1
PTPRN-204ENST00000423636 ERVK-7P63135 1459 aa15.69■□□□□ 0.1
PTPRN-204ENST00000423636 MROH2AA6NES4 1674 aa15.69■□□□□ 0.1
PTPRN-204ENST00000423636 PLEKHG5O94827 1062 aa15.69■□□□□ 0.1
PTPRN-204ENST00000423636 DUSP27Q5VZP5 1158 aa15.69■□□□□ 0.1
PTPRN-204ENST00000423636 U2AF1L5P0DN76 240 aaPredicted RBP15.68■□□□□ 0.1
PTPRN-204ENST00000423636 U2AF1Q01081 240 aaKnown RBP eCLIP15.68■□□□□ 0.1
PTPRN-204ENST00000423636 TET3O43151 1660 aa15.67■□□□□ 0.1
PTPRN-204ENST00000423636 EIF2AK4Q9P2K8 1649 aaKnown RBP15.67■□□□□ 0.1
PTPRN-204ENST00000423636 RNF123Q5XPI4 1314 aa15.67■□□□□ 0.1
PTPRN-204ENST00000423636 ABCA6Q8N139 1617 aa15.67■□□□□ 0.1
PTPRN-204ENST00000423636 VGFO15240 615 aaPredicted RBP15.66■□□□□ 0.1
PTPRN-204ENST00000423636 CANXP27824 592 aaKnown RBP15.66■□□□□ 0.1
PTPRN-204ENST00000423636 CEBPAP49715 358 aaPredicted RBP15.65■□□□□ 0.1
PTPRN-204ENST00000423636 PANK1Q8TE04 598 aa15.65■□□□□ 0.1
PTPRN-204ENST00000423636 FRMPD1Q5SYB0 1578 aa15.65■□□□□ 0.1
PTPRN-204ENST00000423636 RNF17Q9BXT8 1623 aaKnown RBP15.65■□□□□ 0.1
PTPRN-204ENST00000423636 EFCAB6Q5THR3 1501 aa15.65■□□□□ 0.1
PTPRN-204ENST00000423636 ERICH6BQ5W0A0 696 aa15.65■□□□□ 0.1
PTPRN-204ENST00000423636 CABP1Q9NZU7 370 aa15.64■□□□□ 0.09
PTPRN-204ENST00000423636 ZRANB1Q9UGI0 708 aa15.64■□□□□ 0.09
PTPRN-204ENST00000423636 TCP11L2Q8N4U5 519 aa15.63■□□□□ 0.09
PTPRN-204ENST00000423636 TXNDC2Q86VQ3 553 aa15.63■□□□□ 0.09
PTPRN-204ENST00000423636 SLC4A3P48751 1232 aa15.63■□□□□ 0.09
PTPRN-204ENST00000423636 TSR2Q969E8 191 aaKnown RBP15.63■□□□□ 0.09
PTPRN-204ENST00000423636 ASXL1Q8IXJ9 1541 aa15.63■□□□□ 0.09
PTPRN-204ENST00000423636 MYT1Q01538 1121 aa15.62■□□□□ 0.09
PTPRN-204ENST00000423636 COG6Q9Y2V7 657 aa15.62■□□□□ 0.09
PTPRN-204ENST00000423636 PDE3BQ13370 1112 aa15.61■□□□□ 0.09
PTPRN-204ENST00000423636 ESF1Q9H501 851 aaKnown RBP15.61■□□□□ 0.09
PTPRN-204ENST00000423636 LAS1LQ9Y4W2 734 aaKnown RBP15.61■□□□□ 0.09
PTPRN-204ENST00000423636 KIF1BO60333 1816 aa15.61■□□□□ 0.09
PTPRN-204ENST00000423636 TCERG1O14776 1098 aaKnown RBP15.61■□□□□ 0.09
PTPRN-204ENST00000423636 SLFN5Q08AF3 891 aa15.61■□□□□ 0.09
PTPRN-204ENST00000423636 MAP3K4Q9Y6R4 1608 aa15.61■□□□□ 0.09
PTPRN-204ENST00000423636 DEPDC5O75140 1603 aa15.6■□□□□ 0.09
PTPRN-204ENST00000423636 EVC2Q86UK5 1308 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms