RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 TEX35Q5T0J7 233 aa4.19□□□□□ -1.74
SYNE1-212ENST00000423061 SMARCA4P51532 1647 aa4.19□□□□□ -1.74
SYNE1-212ENST00000423061 SMARCA2P51531 1590 aa4.19□□□□□ -1.74
SYNE1-212ENST00000423061 U2AF2P26368 475 aaKnown RBP eCLIP4.19□□□□□ -1.74
SYNE1-212ENST00000423061 SLC26A8Q96RN1 970 aa4.19□□□□□ -1.74
SYNE1-212ENST00000423061 KCNA4P22459 653 aa4.19□□□□□ -1.74
SYNE1-212ENST00000423061 HSP90AB3PQ58FF7 597 aa4.19□□□□□ -1.74
SYNE1-212ENST00000423061 DNAJC21Q5F1R6 531 aaKnown RBP4.19□□□□□ -1.74
SYNE1-212ENST00000423061 PABPN1Q86U42 306 aaKnown RBP eCLIP4.19□□□□□ -1.74
SYNE1-212ENST00000423061 ARID4AP29374 1257 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 FOXD4L6Q3SYB3 417 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 FOXD4L3Q6VB84 417 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 NOL10Q9BSC4 688 aaKnown RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 MROH2BQ7Z745 1585 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 RALBP1Q15311 655 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 MCTP1Q6DN14 999 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 DIAPH3Q9NSV4 1193 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 FSD2A1L4K1 749 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 NOM1Q5C9Z4 860 aaKnown RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 FAM212AQ96EL1 285 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 OGFRQ9NZT2 677 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 CAVIN1Q6NZI2 390 aaKnown RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 PRPF38AQ8NAV1 312 aaKnown RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 HMGN5P82970 282 aaKnown RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 TMEM132AQ24JP5 1023 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 CALR3Q96L12 384 aaKnown RBP4.18□□□□□ -1.74
SYNE1-212ENST00000423061 ARID3CA6NKF2 412 aa4.18□□□□□ -1.74
SYNE1-212ENST00000423061 CCAR2Q8N163 923 aaKnown RBP4.17□□□□□ -1.74
SYNE1-212ENST00000423061 C10orf67Q8IYJ2 551 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 CUX1P39880 1505 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 PANK3Q9H999 370 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 SOGA1O94964 1423 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 GAS2L3Q86XJ1 694 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 RAB3GAP2Q9H2M9 1393 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 TBC1D2Q9BYX2 928 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 EFCC1Q9HA90 598 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 SETQ01105 290 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-212ENST00000423061 C20orf194Q5TEA3 1177 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 SMC4Q9NTJ3 1288 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 SLC52A1Q9NWF4 448 aa4.17□□□□□ -1.74
SYNE1-212ENST00000423061 EIF4G1Q04637 1599 aaKnown RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 TTC31Q49AM3 519 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 SPC24Q8NBT2 197 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 PRPF40AO75400 957 aaKnown RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 CASC1Q6TDU7 716 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 PHLDB1Q86UU1 1377 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 TERF1P54274 439 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 CT47A1Q5JQC4 288 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 CCDC191Q8NCU4 936 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 GORABQ5T7V8 394 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 CENPQQ7L2Z9 268 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 CWC15Q9P013 229 aaKnown RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 GPS2Q13227 327 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 RBM27Q9P2N5 1060 aaKnown RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 CCDC88BA6NC98 1476 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 SART3Q15020 963 aaKnown RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 FMN1Q68DA7 1419 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 ZNF777Q9ULD5 760 aaPredicted RBP4.16□□□□□ -1.74
SYNE1-212ENST00000423061 ZBED9Q6R2W3 1325 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 IFT57Q9NWB7 429 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 STK26Q9P289 416 aa4.16□□□□□ -1.74
SYNE1-212ENST00000423061 U2SURPO15042 1029 aaKnown RBP4.15□□□□□ -1.74
SYNE1-212ENST00000423061 CDCA7LQ96GN5 454 aa4.15□□□□□ -1.74
SYNE1-212ENST00000423061 CCDC18Q5T9S5 1454 aa4.15□□□□□ -1.74
SYNE1-212ENST00000423061 RBM28Q9NW13 759 aaKnown RBP4.15□□□□□ -1.74
SYNE1-212ENST00000423061 KRT222Q8N1A0 295 aa4.15□□□□□ -1.74
SYNE1-212ENST00000423061 ZNF513Q8N8E2 541 aaPredicted RBP4.15□□□□□ -1.74
SYNE1-212ENST00000423061 PSMD1Q99460 953 aa4.15□□□□□ -1.74
SYNE1-212ENST00000423061 KTN1Q86UP2 1357 aaKnown RBP4.15□□□□□ -1.75
SYNE1-212ENST00000423061 AKNAQ7Z591 1439 aa4.15□□□□□ -1.75
SYNE1-212ENST00000423061 PPP2R5AQ15172 486 aa4.15□□□□□ -1.75
SYNE1-212ENST00000423061 A0A1B0GUL7 405 aa4.15□□□□□ -1.75
SYNE1-212ENST00000423061 NOLC1Q14978 699 aaKnown RBP eCLIP4.15□□□□□ -1.75
SYNE1-212ENST00000423061 TSPY26PQ9H489 355 aa4.15□□□□□ -1.75
SYNE1-212ENST00000423061 H0YHG0 523 aa4.15□□□□□ -1.75
SYNE1-212ENST00000423061 SARNPP82979 210 aaKnown RBP4.15□□□□□ -1.75
SYNE1-212ENST00000423061 CCDC91Q7Z6B0 441 aa4.15□□□□□ -1.75
SYNE1-212ENST00000423061 RPAINQ86UA6 219 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 TPD52L1Q16890 204 aaPredicted RBP4.14□□□□□ -1.75
SYNE1-212ENST00000423061 RBSNQ9H1K0 784 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 SRRTQ9BXP5 876 aaKnown RBP4.14□□□□□ -1.75
SYNE1-212ENST00000423061 ROCK2O75116 1388 aaKnown RBP4.14□□□□□ -1.75
SYNE1-212ENST00000423061 HNRNPH2P55795 449 aaKnown RBP4.14□□□□□ -1.75
SYNE1-212ENST00000423061 AK7Q96M32 723 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 RASSF4Q9H2L5 321 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 CUX2O14529 1486 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 PHF14O94880 888 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 CEP83Q9Y592 693 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 SEC24BO95487 1268 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 RTF1Q92541 710 aaKnown RBP4.14□□□□□ -1.75
SYNE1-212ENST00000423061 CECR2Q9BXF3 1484 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 ERICH3Q5RHP9 1530 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 GOLGA6L4A6NEF3 574 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 MCM5P33992 734 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 MYRIPQ8NFW9 859 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 TRIM66O15016 1216 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 SSFA2P28290 1259 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 GYS2P54840 703 aa4.14□□□□□ -1.75
SYNE1-212ENST00000423061 CPSF2Q9P2I0 782 aaKnown RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 MNAT1P51948 309 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms