RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 ERVK-7P63135 1459 aa29.31■■■□□ 2.28
GPC1-202ENST00000420138 SLC52A1Q9NWF4 448 aa29.3■■■□□ 2.28
GPC1-202ENST00000420138 CHGAP10645 457 aaKnown RBP29.29■■■□□ 2.28
GPC1-202ENST00000420138 ZMYM3Q14202 1370 aa29.29■■■□□ 2.28
GPC1-202ENST00000420138 POLR1AO95602 1720 aaPredicted RBP29.28■■■□□ 2.28
GPC1-202ENST00000420138 SPATA31D1Q6ZQQ2 1576 aa29.27■■■□□ 2.28
GPC1-202ENST00000420138 RPGRIP1LQ68CZ1 1315 aa29.26■■■□□ 2.27
GPC1-202ENST00000420138 KIAA1210Q9ULL0 1709 aa29.23■■■□□ 2.27
GPC1-202ENST00000420138 CENPBP07199 599 aaPredicted RBP29.22■■■□□ 2.27
GPC1-202ENST00000420138 PPLO60437 1756 aa29.22■■■□□ 2.27
GPC1-202ENST00000420138 C3P01024 1663 aa29.21■■■□□ 2.27
GPC1-202ENST00000420138 MYO5BQ9ULV0 1848 aa29.21■■■□□ 2.27
GPC1-202ENST00000420138 CFAP70Q5T0N1 1121 aa29.2■■■□□ 2.27
GPC1-202ENST00000420138 NEXMIFQ5QGS0 1516 aa29.2■■■□□ 2.26
GPC1-202ENST00000420138 TMEM131LA2VDJ0 1609 aa29.19■■■□□ 2.26
GPC1-202ENST00000420138 TESK2Q96S53 571 aa29.19■■■□□ 2.26
GPC1-202ENST00000420138 PIK3C2GO75747 1445 aa29.19■■■□□ 2.26
GPC1-202ENST00000420138 IQGAP1P46940 1657 aa29.17■■■□□ 2.26
GPC1-202ENST00000420138 SCAF11Q99590 1463 aaKnown RBP29.16■■■□□ 2.26
GPC1-202ENST00000420138 RIMS1Q86UR5 1692 aaKnown RBP29.15■■■□□ 2.26
GPC1-202ENST00000420138 ANP32CO43423 234 aa29.14■■■□□ 2.26
GPC1-202ENST00000420138 ADAMTSL3P82987 1691 aa29.14■■■□□ 2.25
GPC1-202ENST00000420138 C14orf93Q9H972 538 aaKnown RBP29.11■■■□□ 2.25
GPC1-202ENST00000420138 ZFYVE9O95405 1425 aa29.11■■■□□ 2.25
GPC1-202ENST00000420138 VGFO15240 615 aaPredicted RBP29.09■■■□□ 2.25
GPC1-202ENST00000420138 TNRQ92752 1358 aa29.09■■■□□ 2.25
GPC1-202ENST00000420138 SETBP1Q9Y6X0 1596 aa29.08■■■□□ 2.25
GPC1-202ENST00000420138 CEBPAP49715 358 aaPredicted RBP29.08■■■□□ 2.25
GPC1-202ENST00000420138 DISP3Q9P2K9 1392 aa29.07■■■□□ 2.24
GPC1-202ENST00000420138 NUTM2DQ5VT03 806 aaPredicted RBP29.07■■■□□ 2.24
GPC1-202ENST00000420138 ADGRB1O14514 1584 aa29.06■■■□□ 2.24
GPC1-202ENST00000420138 POLR3GLQ9BT43 218 aa29.05■■■□□ 2.24
GPC1-202ENST00000420138 STAG3Q9UJ98 1225 aa29.05■■■□□ 2.24
GPC1-202ENST00000420138 A2ML1A8K2U0 1454 aa29.05■■■□□ 2.24
GPC1-202ENST00000420138 CCER2I3L3R5 266 aa29.04■■■□□ 2.24
GPC1-202ENST00000420138 PLPPR3Q6T4P5 718 aa29.04■■■□□ 2.24
GPC1-202ENST00000420138 KDM5AP29375 1690 aaKnown RBP29.01■■■□□ 2.24
GPC1-202ENST00000420138 YTHDC1Q96MU7 727 aaKnown RBP29.01■■■□□ 2.24
GPC1-202ENST00000420138 EIF3AQ14152 1382 aaKnown RBP29■■■□□ 2.23
GPC1-202ENST00000420138 TMF1P82094 1093 aa28.99■■■□□ 2.23
GPC1-202ENST00000420138 UBR1Q8IWV7 1749 aa28.99■■■□□ 2.23
GPC1-202ENST00000420138 SCAF1Q9H7N4 1312 aaKnown RBP28.99■■■□□ 2.23
GPC1-202ENST00000420138 NLRP1Q9C000 1473 aa28.98■■■□□ 2.23
GPC1-202ENST00000420138 TMEM132EQ6IEE7 984 aa28.96■■■□□ 2.23
GPC1-202ENST00000420138 PRKRIP1Q9H875 184 aaPredicted RBP28.95■■■□□ 2.23
GPC1-202ENST00000420138 MYO3AQ8NEV4 1616 aa28.94■■■□□ 2.22
GPC1-202ENST00000420138 RIMS2Q9UQ26 1411 aa28.92■■■□□ 2.22
GPC1-202ENST00000420138 ASXL1Q8IXJ9 1541 aa28.91■■■□□ 2.22
GPC1-202ENST00000420138 SBNO2Q9Y2G9 1366 aa28.89■■■□□ 2.22
GPC1-202ENST00000420138 TRAK1Q9UPV9 953 aa28.89■■■□□ 2.22
GPC1-202ENST00000420138 CENPJQ9HC77 1338 aaPredicted RBP28.85■■■□□ 2.21
GPC1-202ENST00000420138 ALKQ9UM73 1620 aa28.84■■■□□ 2.21
GPC1-202ENST00000420138 SETD1BQ9UPS6 1966 aaKnown RBP28.84■■■□□ 2.21
GPC1-202ENST00000420138 PER1O15534 1290 aaPredicted RBP28.83■■■□□ 2.21
GPC1-202ENST00000420138 PTPRMP28827 1452 aa28.83■■■□□ 2.21
GPC1-202ENST00000420138 SLC24A1O60721 1099 aa28.83■■■□□ 2.21
GPC1-202ENST00000420138 SENP3Q9H4L4 574 aaPredicted RBP28.83■■■□□ 2.21
GPC1-202ENST00000420138 CEP170BQ9Y4F5 1589 aaPredicted RBP28.82■■■□□ 2.2
GPC1-202ENST00000420138 CDCA8Q53HL2 280 aa28.82■■■□□ 2.2
GPC1-202ENST00000420138 TMEM2Q9UHN6 1383 aa28.8■■■□□ 2.2
GPC1-202ENST00000420138 ZNF142P52746 1687 aaPredicted RBP28.8■■■□□ 2.2
GPC1-202ENST00000420138 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.79■■■□□ 2.2
GPC1-202ENST00000420138 CCDC184Q52MB2 194 aa28.78■■■□□ 2.2
GPC1-202ENST00000420138 ARHGEF28Q8N1W1 1705 aaKnown RBP28.78■■■□□ 2.2
GPC1-202ENST00000420138 HDGFP51858 240 aaKnown RBP28.78■■■□□ 2.2
GPC1-202ENST00000420138 PANK3Q9H999 370 aa28.77■■■□□ 2.2
GPC1-202ENST00000420138 YTHDC2Q9H6S0 1430 aaKnown RBP28.76■■■□□ 2.19
GPC1-202ENST00000420138 NRXN3Q9Y4C0 1643 aa28.76■■■□□ 2.19
GPC1-202ENST00000420138 QRICH2Q9H0J4 1663 aa28.75■■■□□ 2.19
GPC1-202ENST00000420138 SETD1AO15047 1707 aaKnown RBP28.74■■■□□ 2.19
GPC1-202ENST00000420138 SLIT1O75093 1534 aa28.74■■■□□ 2.19
GPC1-202ENST00000420138 THEMISQ8N1K5 641 aaPredicted RBP28.73■■■□□ 2.19
GPC1-202ENST00000420138 MYOM1P52179 1685 aa28.73■■■□□ 2.19
GPC1-202ENST00000420138 STK26Q9P289 416 aa28.71■■■□□ 2.19
GPC1-202ENST00000420138 ARHGAP23Q9P227 1491 aa28.7■■■□□ 2.19
GPC1-202ENST00000420138 GTF3C3Q9Y5Q9 886 aa28.7■■■□□ 2.18
GPC1-202ENST00000420138 CNGB1Q14028 1251 aaPredicted RBP28.69■■■□□ 2.18
GPC1-202ENST00000420138 KTN1Q86UP2 1357 aaKnown RBP28.67■■■□□ 2.18
GPC1-202ENST00000420138 LTKP29376 864 aa28.66■■■□□ 2.18
GPC1-202ENST00000420138 EID1Q9Y6B2 187 aa28.66■■■□□ 2.18
GPC1-202ENST00000420138 LRPPRCP42704 1394 aaKnown RBP28.66■■■□□ 2.18
GPC1-202ENST00000420138 TXNDC2Q86VQ3 553 aa28.66■■■□□ 2.18
GPC1-202ENST00000420138 TULP4Q9NRJ4 1543 aa28.66■■■□□ 2.18
GPC1-202ENST00000420138 PARD3Q8TEW0 1356 aa28.65■■■□□ 2.18
GPC1-202ENST00000420138 METP08581 1390 aa28.65■■■□□ 2.18
GPC1-202ENST00000420138 RALBP1Q15311 655 aa28.64■■■□□ 2.18
GPC1-202ENST00000420138 PRAM1Q96QH2 718 aa28.63■■■□□ 2.17
GPC1-202ENST00000420138 MRS2Q9HD23 443 aa28.63■■■□□ 2.17
GPC1-202ENST00000420138 DLC1Q96QB1 1528 aa28.63■■■□□ 2.17
GPC1-202ENST00000420138 BCANQ96GW7 911 aa28.62■■■□□ 2.17
GPC1-202ENST00000420138 ABCC11Q96J66 1382 aa28.62■■■□□ 2.17
GPC1-202ENST00000420138 ADAMTS13Q76LX8 1427 aa28.62■■■□□ 2.17
GPC1-202ENST00000420138 PUS7Q96PZ0 661 aaKnown RBP28.62■■■□□ 2.17
GPC1-202ENST00000420138 PLEKHG1Q9ULL1 1385 aa28.61■■■□□ 2.17
GPC1-202ENST00000420138 SAFB2Q14151 953 aaKnown RBP eCLIP28.6■■■□□ 2.17
GPC1-202ENST00000420138 KDM4FA0A1W2PPD8 638 aa28.59■■■□□ 2.17
GPC1-202ENST00000420138 EVC2Q86UK5 1308 aa28.59■■■□□ 2.17
GPC1-202ENST00000420138 AMER1Q5JTC6 1135 aaPredicted RBP28.58■■■□□ 2.17
GPC1-202ENST00000420138 MYBBP1AQ9BQG0 1328 aaKnown RBP28.58■■■□□ 2.17
GPC1-202ENST00000420138 MED14O60244 1454 aa28.56■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms