RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 SPHKAPQ2M3C7 1700 aa12.9□□□□□ -0.34
CD44-206ENST00000415148 ARAP3Q8WWN8 1544 aa12.9□□□□□ -0.34
CD44-206ENST00000415148 NPC1L1Q9UHC9 1359 aa12.9□□□□□ -0.34
CD44-206ENST00000415148 PTPRTO14522 1441 aa12.9□□□□□ -0.34
CD44-206ENST00000415148 SLC24A1O60721 1099 aa12.89□□□□□ -0.35
CD44-206ENST00000415148 NEURL4Q96JN8 1562 aa12.89□□□□□ -0.35
CD44-206ENST00000415148 KNSTRNQ9Y448 316 aa12.89□□□□□ -0.35
CD44-206ENST00000415148 SCAF11Q99590 1463 aaKnown RBP12.89□□□□□ -0.35
CD44-206ENST00000415148 CLASP1Q7Z460 1538 aa12.89□□□□□ -0.35
CD44-206ENST00000415148 ZCCHC11Q5TAX3 1644 aaKnown RBP12.88□□□□□ -0.35
CD44-206ENST00000415148 KIAA1210Q9ULL0 1709 aa12.88□□□□□ -0.35
CD44-206ENST00000415148 SLC4A3P48751 1232 aa12.88□□□□□ -0.35
CD44-206ENST00000415148 PPP2R1AP30153 589 aa12.87□□□□□ -0.35
CD44-206ENST00000415148 ADAMTS8Q9UP79 889 aa12.87□□□□□ -0.35
CD44-206ENST00000415148 DEPDC5O75140 1603 aa12.87□□□□□ -0.35
CD44-206ENST00000415148 PIK3C2GO75747 1445 aa12.87□□□□□ -0.35
CD44-206ENST00000415148 AMER1Q5JTC6 1135 aaPredicted RBP12.86□□□□□ -0.35
CD44-206ENST00000415148 ASXL1Q8IXJ9 1541 aa12.86□□□□□ -0.35
CD44-206ENST00000415148 TRAPPC8Q9Y2L5 1435 aa12.86□□□□□ -0.35
CD44-206ENST00000415148 ERCC6L2Q5T890 1561 aa12.86□□□□□ -0.35
CD44-206ENST00000415148 WDR43Q15061 677 aaKnown RBP eCLIP12.85□□□□□ -0.35
CD44-206ENST00000415148 TET3O43151 1660 aa12.85□□□□□ -0.35
CD44-206ENST00000415148 EIF3AQ14152 1382 aaKnown RBP12.85□□□□□ -0.35
CD44-206ENST00000415148 ZNF521Q96K83 1311 aa12.85□□□□□ -0.35
CD44-206ENST00000415148 SPAG9O60271 1321 aaKnown RBP12.84□□□□□ -0.35
CD44-206ENST00000415148 USP35Q9P2H5 1018 aa12.84□□□□□ -0.35
CD44-206ENST00000415148 DUSP27Q5VZP5 1158 aa12.84□□□□□ -0.35
CD44-206ENST00000415148 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.84□□□□□ -0.35
CD44-206ENST00000415148 CLTCL1P53675 1640 aa12.83□□□□□ -0.35
CD44-206ENST00000415148 ZFYVE16Q7Z3T8 1539 aa12.83□□□□□ -0.36
CD44-206ENST00000415148 VWDEQ8N2E2 1590 aa12.83□□□□□ -0.36
CD44-206ENST00000415148 GOLGA2Q08379 1002 aa12.83□□□□□ -0.36
CD44-206ENST00000415148 NGEFQ8N5V2 710 aa12.83□□□□□ -0.36
CD44-206ENST00000415148 DDRGK1Q96HY6 314 aa12.83□□□□□ -0.36
CD44-206ENST00000415148 MYOM1P52179 1685 aa12.82□□□□□ -0.36
CD44-206ENST00000415148 KDM2BQ8NHM5 1336 aa12.82□□□□□ -0.36
CD44-206ENST00000415148 CENPQQ7L2Z9 268 aaPredicted RBP12.82□□□□□ -0.36
CD44-206ENST00000415148 KANK1Q14678 1352 aa12.82□□□□□ -0.36
CD44-206ENST00000415148 KDM5AP29375 1690 aaKnown RBP12.82□□□□□ -0.36
CD44-206ENST00000415148 TRMT2AQ8IZ69 625 aaKnown RBP12.81□□□□□ -0.36
CD44-206ENST00000415148 PLEKHH1Q9ULM0 1364 aa12.81□□□□□ -0.36
CD44-206ENST00000415148 PPM1GO15355 546 aaPredicted RBP12.8□□□□□ -0.36
CD44-206ENST00000415148 SLFN5Q08AF3 891 aa12.8□□□□□ -0.36
CD44-206ENST00000415148 MYOM2P54296 1465 aa12.79□□□□□ -0.36
CD44-206ENST00000415148 BRPF3Q9ULD4 1205 aa12.79□□□□□ -0.36
CD44-206ENST00000415148 INO80Q9ULG1 1556 aaPredicted RBP12.79□□□□□ -0.36
CD44-206ENST00000415148 MAP3K4Q9Y6R4 1608 aa12.78□□□□□ -0.36
CD44-206ENST00000415148 ATP7AQ04656 1500 aa12.77□□□□□ -0.36
CD44-206ENST00000415148 PRKCSHP14314 528 aaPredicted RBP12.77□□□□□ -0.36
CD44-206ENST00000415148 NFKBIBQ15653 356 aa12.77□□□□□ -0.37
CD44-206ENST00000415148 AFAP1Q8N556 730 aa12.77□□□□□ -0.37
CD44-206ENST00000415148 ABCA9Q8IUA7 1624 aa12.76□□□□□ -0.37
CD44-206ENST00000415148 C8orf34Q49A92 452 aa12.76□□□□□ -0.37
CD44-206ENST00000415148 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.76□□□□□ -0.37
CD44-206ENST00000415148 NKTRP30414 1462 aaKnown RBP12.75□□□□□ -0.37
CD44-206ENST00000415148 MYO3AQ8NEV4 1616 aa12.75□□□□□ -0.37
CD44-206ENST00000415148 SBNO2Q9Y2G9 1366 aa12.75□□□□□ -0.37
CD44-206ENST00000415148 KIF1BO60333 1816 aa12.74□□□□□ -0.37
CD44-206ENST00000415148 ERVK-7P63135 1459 aa12.74□□□□□ -0.37
CD44-206ENST00000415148 IFT172Q9UG01 1749 aa12.74□□□□□ -0.37
CD44-206ENST00000415148 E9PSI1 815 aa12.74□□□□□ -0.37
CD44-206ENST00000415148 SPINK5Q9NQ38 1064 aaPredicted RBP12.74□□□□□ -0.37
CD44-206ENST00000415148 ABCA6Q8N139 1617 aa12.73□□□□□ -0.37
CD44-206ENST00000415148 NRXN1Q9ULB1 1477 aa12.73□□□□□ -0.37
CD44-206ENST00000415148 FAM161AQ3B820 660 aa12.73□□□□□ -0.37
CD44-206ENST00000415148 FRAT1Q92837 279 aaPredicted RBP12.73□□□□□ -0.37
CD44-206ENST00000415148 FANCAO15360 1455 aa12.72□□□□□ -0.37
CD44-206ENST00000415148 RGS3P49796 1198 aa12.72□□□□□ -0.37
CD44-206ENST00000415148 MROH1Q8NDA8 1641 aa12.72□□□□□ -0.37
CD44-206ENST00000415148 POLR3AO14802 1390 aaPredicted RBP12.72□□□□□ -0.37
CD44-206ENST00000415148 NINLQ9Y2I6 1382 aa12.72□□□□□ -0.37
CD44-206ENST00000415148 CCDC146Q8IYE0 955 aa12.72□□□□□ -0.37
CD44-206ENST00000415148 SETBP1Q9Y6X0 1596 aa12.72□□□□□ -0.37
CD44-206ENST00000415148 LMTK2Q8IWU2 1503 aa12.71□□□□□ -0.37
CD44-206ENST00000415148 KIF3BO15066 747 aa12.71□□□□□ -0.38
CD44-206ENST00000415148 OSCARQ8IYS5 282 aa12.71□□□□□ -0.38
CD44-206ENST00000415148 EFCAB6Q5THR3 1501 aa12.7□□□□□ -0.38
CD44-206ENST00000415148 APAF1O14727 1248 aa12.7□□□□□ -0.38
CD44-206ENST00000415148 GSE1Q14687 1217 aa12.7□□□□□ -0.38
CD44-206ENST00000415148 CFAP70Q5T0N1 1121 aa12.7□□□□□ -0.38
CD44-206ENST00000415148 DMRT2Q9Y5R5 561 aa12.7□□□□□ -0.38
CD44-206ENST00000415148 PDE3AQ14432 1141 aa12.7□□□□□ -0.38
CD44-206ENST00000415148 FRAT2O75474 233 aaPredicted RBP12.69□□□□□ -0.38
CD44-206ENST00000415148 CARD14Q9BXL6 1004 aa12.69□□□□□ -0.38
CD44-206ENST00000415148 BCAR3O75815 825 aa12.69□□□□□ -0.38
CD44-206ENST00000415148 AAMPQ13685 434 aa12.69□□□□□ -0.38
CD44-206ENST00000415148 ADGRL1O94910 1474 aa12.68□□□□□ -0.38
CD44-206ENST00000415148 CGNL1Q0VF96 1302 aa12.68□□□□□ -0.38
CD44-206ENST00000415148 ADGRF5Q8IZF2 1346 aa12.68□□□□□ -0.38
CD44-206ENST00000415148 DAXXQ9UER7 740 aaPredicted RBP12.67□□□□□ -0.38
CD44-206ENST00000415148 IGHDP01880 384 aa12.66□□□□□ -0.38
CD44-206ENST00000415148 NCBP3Q53F19 620 aaKnown RBP12.66□□□□□ -0.38
CD44-206ENST00000415148 ADGRB3O60242 1522 aa12.66□□□□□ -0.38
CD44-206ENST00000415148 MROH2AA6NES4 1674 aa12.66□□□□□ -0.38
CD44-206ENST00000415148 PPRC1Q5VV67 1664 aaKnown RBP12.65□□□□□ -0.38
CD44-206ENST00000415148 UGGT1Q9NYU2 1555 aa12.65□□□□□ -0.38
CD44-206ENST00000415148 USP32Q8NFA0 1604 aa12.65□□□□□ -0.38
CD44-206ENST00000415148 SEC24BO95487 1268 aa12.65□□□□□ -0.38
CD44-206ENST00000415148 PUS7Q96PZ0 661 aaKnown RBP12.65□□□□□ -0.38
CD44-206ENST00000415148 USP19O94966 1318 aa12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms