RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 PLEKHH2Q8IVE3 1493 aa12.85□□□□□ -0.35
SNHG3-201ENST00000413987 IRX6P78412 446 aaPredicted RBP12.85□□□□□ -0.35
SNHG3-201ENST00000413987 KIF13AQ9H1H9 1805 aa12.85□□□□□ -0.35
SNHG3-201ENST00000413987 SPDYE4A6NLX3 237 aa12.84□□□□□ -0.35
SNHG3-201ENST00000413987 MKRN3Q13064 507 aaKnown RBP12.84□□□□□ -0.35
SNHG3-201ENST00000413987 SPAG9O60271 1321 aaKnown RBP12.83□□□□□ -0.36
SNHG3-201ENST00000413987 GLI2P10070 1586 aa12.83□□□□□ -0.36
SNHG3-201ENST00000413987 PPRC1Q5VV67 1664 aaKnown RBP12.82□□□□□ -0.36
SNHG3-201ENST00000413987 ANKRD50Q9ULJ7 1429 aa12.82□□□□□ -0.36
SNHG3-201ENST00000413987 ZFYVE16Q7Z3T8 1539 aa12.82□□□□□ -0.36
SNHG3-201ENST00000413987 TMED8Q6PL24 325 aaPredicted RBP12.8□□□□□ -0.36
SNHG3-201ENST00000413987 CCDC136Q96JN2 1154 aa12.8□□□□□ -0.36
SNHG3-201ENST00000413987 DENND4BO75064 1496 aaPredicted RBP12.8□□□□□ -0.36
SNHG3-201ENST00000413987 POGZQ7Z3K3 1410 aa12.8□□□□□ -0.36
SNHG3-201ENST00000413987 IL27Q8NEV9 243 aa12.8□□□□□ -0.36
SNHG3-201ENST00000413987 SIN3AQ96ST3 1273 aa12.8□□□□□ -0.36
SNHG3-201ENST00000413987 MAST1Q9Y2H9 1570 aa12.79□□□□□ -0.36
SNHG3-201ENST00000413987 ATP7AQ04656 1500 aa12.79□□□□□ -0.36
SNHG3-201ENST00000413987 CFAP74Q9C0B2 1584 aa12.78□□□□□ -0.36
SNHG3-201ENST00000413987 ZNF518AQ6AHZ1 1483 aa12.78□□□□□ -0.36
SNHG3-201ENST00000413987 NEO1Q92859 1461 aa12.78□□□□□ -0.36
SNHG3-201ENST00000413987 CCDC125Q86Z20 511 aa12.78□□□□□ -0.36
SNHG3-201ENST00000413987 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.78□□□□□ -0.36
SNHG3-201ENST00000413987 WDR70Q9NW82 654 aa12.78□□□□□ -0.36
SNHG3-201ENST00000413987 INO80Q9ULG1 1556 aaPredicted RBP12.78□□□□□ -0.36
SNHG3-201ENST00000413987 PLXNC1O60486 1568 aa12.77□□□□□ -0.37
SNHG3-201ENST00000413987 KIDINS220Q9ULH0 1771 aa12.76□□□□□ -0.37
SNHG3-201ENST00000413987 MPHOSPH9Q99550 1183 aa12.76□□□□□ -0.37
SNHG3-201ENST00000413987 COL17A1Q9UMD9 1497 aaPredicted RBP12.75□□□□□ -0.37
SNHG3-201ENST00000413987 FRMPD1Q5SYB0 1578 aa12.75□□□□□ -0.37
SNHG3-201ENST00000413987 NUP155O75694 1391 aa12.75□□□□□ -0.37
SNHG3-201ENST00000413987 PZPP20742 1482 aa12.74□□□□□ -0.37
SNHG3-201ENST00000413987 RICTORQ6R327 1708 aa12.74□□□□□ -0.37
SNHG3-201ENST00000413987 HS6ST3Q8IZP7 471 aa12.74□□□□□ -0.37
SNHG3-201ENST00000413987 ATF5Q9Y2D1 282 aaPredicted RBP12.74□□□□□ -0.37
SNHG3-201ENST00000413987 RBM19Q9Y4C8 960 aaKnown RBP12.74□□□□□ -0.37
SNHG3-201ENST00000413987 KDM5CP41229 1560 aa12.74□□□□□ -0.37
SNHG3-201ENST00000413987 YEATS2Q9ULM3 1422 aa12.74□□□□□ -0.37
SNHG3-201ENST00000413987 DUOX2Q9NRD8 1548 aa12.73□□□□□ -0.37
SNHG3-201ENST00000413987 A0A0U1RQG5 324 aaPredicted RBP12.73□□□□□ -0.37
SNHG3-201ENST00000413987 RTEL1-TNFRSF6BF6WH68 1400 aa12.73□□□□□ -0.37
SNHG3-201ENST00000413987 HECW2Q9P2P5 1572 aa12.72□□□□□ -0.37
SNHG3-201ENST00000413987 ABCA6Q8N139 1617 aa12.72□□□□□ -0.37
SNHG3-201ENST00000413987 TEX14Q8IWB6 1497 aa12.72□□□□□ -0.37
SNHG3-201ENST00000413987 GPBP1L1Q9HC44 474 aaPredicted RBP12.71□□□□□ -0.37
SNHG3-201ENST00000413987 KIF3BO15066 747 aa12.7□□□□□ -0.38
SNHG3-201ENST00000413987 FBXW7Q969H0 707 aa12.7□□□□□ -0.38
SNHG3-201ENST00000413987 CCDC27Q2M243 656 aa12.7□□□□□ -0.38
SNHG3-201ENST00000413987 ERBINQ96RT1 1412 aa12.69□□□□□ -0.38
SNHG3-201ENST00000413987 NAP1L5Q96NT1 182 aaPredicted RBP12.69□□□□□ -0.38
SNHG3-201ENST00000413987 PRDM16Q9HAZ2 1276 aa12.69□□□□□ -0.38
SNHG3-201ENST00000413987 MLH3Q9UHC1 1453 aa12.69□□□□□ -0.38
SNHG3-201ENST00000413987 FAM135AQ9P2D6 1515 aa12.68□□□□□ -0.38
SNHG3-201ENST00000413987 A2MP01023 1474 aa12.68□□□□□ -0.38
SNHG3-201ENST00000413987 GTPBP6O43824 516 aaPredicted RBP12.68□□□□□ -0.38
SNHG3-201ENST00000413987 ZNF526Q8TF50 670 aaPredicted RBP12.68□□□□□ -0.38
SNHG3-201ENST00000413987 DIP2CQ9Y2E4 1556 aa12.67□□□□□ -0.38
SNHG3-201ENST00000413987 DHX29Q7Z478 1369 aaKnown RBP12.67□□□□□ -0.38
SNHG3-201ENST00000413987 NKX1-1Q15270 411 aaPredicted RBP12.67□□□□□ -0.38
SNHG3-201ENST00000413987 KCNV2Q8TDN2 545 aa12.67□□□□□ -0.38
SNHG3-201ENST00000413987 UNC13BO14795 1591 aa12.66□□□□□ -0.38
SNHG3-201ENST00000413987 GGT6Q6P531 493 aa12.66□□□□□ -0.38
SNHG3-201ENST00000413987 FANCIQ9NVI1 1328 aa12.64□□□□□ -0.39
SNHG3-201ENST00000413987 TRAK2O60296 914 aa12.64□□□□□ -0.39
SNHG3-201ENST00000413987 KDM5DQ9BY66 1539 aa12.64□□□□□ -0.39
SNHG3-201ENST00000413987 ANKRD30BQ9BXX2 1392 aa12.64□□□□□ -0.39
SNHG3-201ENST00000413987 SIGLEC1Q9BZZ2 1709 aa12.63□□□□□ -0.39
SNHG3-201ENST00000413987 MROH1Q8NDA8 1641 aa12.63□□□□□ -0.39
SNHG3-201ENST00000413987 MAGI2Q86UL8 1455 aa12.63□□□□□ -0.39
SNHG3-201ENST00000413987 KDM4AO75164 1064 aa12.63□□□□□ -0.39
SNHG3-201ENST00000413987 ZMYM4Q5VZL5 1548 aa12.62□□□□□ -0.39
SNHG3-201ENST00000413987 BARGINQ6ZT62 677 aa12.62□□□□□ -0.39
SNHG3-201ENST00000413987 IQGAP3Q86VI3 1631 aa12.62□□□□□ -0.39
SNHG3-201ENST00000413987 IRF5Q13568 498 aa12.62□□□□□ -0.39
SNHG3-201ENST00000413987 RETREG2Q8NC44 543 aa12.61□□□□□ -0.39
SNHG3-201ENST00000413987 DEPDC5O75140 1603 aa12.61□□□□□ -0.39
SNHG3-201ENST00000413987 MLECQ14165 292 aa12.61□□□□□ -0.39
SNHG3-201ENST00000413987 FLIIQ13045 1269 aa12.6□□□□□ -0.39
SNHG3-201ENST00000413987 RNF216Q9NWF9 866 aaPredicted RBP12.6□□□□□ -0.39
SNHG3-201ENST00000413987 EIF2AK4Q9P2K8 1649 aaKnown RBP12.59□□□□□ -0.39
SNHG3-201ENST00000413987 ZMYND10O75800 440 aa12.59□□□□□ -0.39
SNHG3-201ENST00000413987 TONSLQ96HA7 1378 aa12.59□□□□□ -0.39
SNHG3-201ENST00000413987 PRDM15P57071 1507 aaPredicted RBP12.59□□□□□ -0.39
SNHG3-201ENST00000413987 TEX2Q8IWB9 1127 aa12.58□□□□□ -0.39
SNHG3-201ENST00000413987 CEP152O94986 1710 aa12.58□□□□□ -0.4
SNHG3-201ENST00000413987 CANXP27824 592 aaKnown RBP12.58□□□□□ -0.4
SNHG3-201ENST00000413987 AMOTL2Q9Y2J4 779 aa12.58□□□□□ -0.4
SNHG3-201ENST00000413987 PLA2R1Q13018 1463 aa12.58□□□□□ -0.4
SNHG3-201ENST00000413987 E9PCH4 1651 aa12.58□□□□□ -0.4
SNHG3-201ENST00000413987 MSH5O43196 834 aa12.57□□□□□ -0.4
SNHG3-201ENST00000413987 NCLP19338 710 aaKnown RBP12.57□□□□□ -0.4
SNHG3-201ENST00000413987 CCER2I3L3R5 266 aa12.57□□□□□ -0.4
SNHG3-201ENST00000413987 ATP10AO60312 1499 aa12.57□□□□□ -0.4
SNHG3-201ENST00000413987 CLUAP1Q96AJ1 413 aa12.57□□□□□ -0.4
SNHG3-201ENST00000413987 RNF17Q9BXT8 1623 aaKnown RBP12.56□□□□□ -0.4
SNHG3-201ENST00000413987 ARHGEF40Q8TER5 1519 aa12.56□□□□□ -0.4
SNHG3-201ENST00000413987 VWDEQ8N2E2 1590 aa12.56□□□□□ -0.4
SNHG3-201ENST00000413987 RPRD2Q5VT52 1461 aaKnown RBP12.56□□□□□ -0.4
SNHG3-201ENST00000413987 KANK1Q14678 1352 aa12.56□□□□□ -0.4
SNHG3-201ENST00000413987 WASHC2CQ9Y4E1 1318 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms