RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 PCDHB3Q9Y5E6 796 aa11.03□□□□□ -0.64
CLK1-203ENST00000409769 LAPTM4AQ15012 233 aa11.02□□□□□ -0.65
CLK1-203ENST00000409769 PPP1R18Q6NYC8 613 aa11.02□□□□□ -0.65
CLK1-203ENST00000409769 ZNF516Q92618 1163 aa11.02□□□□□ -0.65
CLK1-203ENST00000409769 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.02□□□□□ -0.65
CLK1-203ENST00000409769 RSPH4AQ5TD94 716 aa11.01□□□□□ -0.65
CLK1-203ENST00000409769 PXYLP1Q8TE99 480 aa11.01□□□□□ -0.65
CLK1-203ENST00000409769 TMUB1Q9BVT8 246 aa11.01□□□□□ -0.65
CLK1-203ENST00000409769 GNPATO15228 680 aa11□□□□□ -0.65
CLK1-203ENST00000409769 ZPR1O75312 459 aa11□□□□□ -0.65
CLK1-203ENST00000409769 COPS2P61201 443 aa11□□□□□ -0.65
CLK1-203ENST00000409769 RBM26Q5T8P6 1007 aaKnown RBP11□□□□□ -0.65
CLK1-203ENST00000409769 V9GY48 417 aaPredicted RBP11□□□□□ -0.65
CLK1-203ENST00000409769 ACTN4O43707 911 aaKnown RBP10.99□□□□□ -0.65
CLK1-203ENST00000409769 FAM161AQ3B820 660 aa10.97□□□□□ -0.65
CLK1-203ENST00000409769 METTL3Q86U44 580 aaKnown RBP10.97□□□□□ -0.65
CLK1-203ENST00000409769 CFHP08603 1231 aa10.96□□□□□ -0.65
CLK1-203ENST00000409769 PRKD2Q9BZL6 878 aa10.96□□□□□ -0.65
CLK1-203ENST00000409769 VSIG10Q8N0Z9 540 aa10.95□□□□□ -0.66
CLK1-203ENST00000409769 TULP1O00294 542 aaPredicted RBP10.94□□□□□ -0.66
CLK1-203ENST00000409769 SLC24A1O60721 1099 aa10.94□□□□□ -0.66
CLK1-203ENST00000409769 BLOC1S3Q6QNY0 202 aa10.94□□□□□ -0.66
CLK1-203ENST00000409769 NKX2-3Q8TAU0 364 aa10.94□□□□□ -0.66
CLK1-203ENST00000409769 GPR37O15354 613 aa10.93□□□□□ -0.66
CLK1-203ENST00000409769 KDM2AQ9Y2K7 1162 aa10.93□□□□□ -0.66
CLK1-203ENST00000409769 SLC10A3P09131 477 aa10.92□□□□□ -0.66
CLK1-203ENST00000409769 GPIHBP1Q8IV16 184 aa10.92□□□□□ -0.66
CLK1-203ENST00000409769 NR1I2O75469 434 aa10.91□□□□□ -0.66
CLK1-203ENST00000409769 Q6ZNB5 142 aa10.9□□□□□ -0.66
CLK1-203ENST00000409769 DAXXQ9UER7 740 aaPredicted RBP10.9□□□□□ -0.66
CLK1-203ENST00000409769 GFRA3O60609 400 aa10.88□□□□□ -0.67
CLK1-203ENST00000409769 FECHP22830 423 aa10.87□□□□□ -0.67
CLK1-203ENST00000409769 SULF1Q8IWU6 871 aa10.87□□□□□ -0.67
CLK1-203ENST00000409769 NRG2O14511 850 aaPredicted RBP10.86□□□□□ -0.67
CLK1-203ENST00000409769 ADH1BP00325 375 aa10.85□□□□□ -0.67
CLK1-203ENST00000409769 ANKLE1Q8NAG6 615 aa10.85□□□□□ -0.67
CLK1-203ENST00000409769 RNF223E7ERA6 249 aa10.84□□□□□ -0.67
CLK1-203ENST00000409769 TLL1O43897 1013 aa10.83□□□□□ -0.68
CLK1-203ENST00000409769 RDH13Q8NBN7 331 aa10.83□□□□□ -0.68
CLK1-203ENST00000409769 SCUBE3Q8IX30 993 aa10.82□□□□□ -0.68
CLK1-203ENST00000409769 DDX11L8A8MPP1 907 aa10.81□□□□□ -0.68
CLK1-203ENST00000409769 SLC19A1P41440 591 aa10.8□□□□□ -0.68
CLK1-203ENST00000409769 SLC6A16Q9GZN6 736 aa10.8□□□□□ -0.68
CLK1-203ENST00000409769 S1PR4O95977 384 aa10.79□□□□□ -0.68
CLK1-203ENST00000409769 MAP2K5Q13163 448 aa10.79□□□□□ -0.68
CLK1-203ENST00000409769 ATP6V1AP38606 617 aa10.78□□□□□ -0.68
CLK1-203ENST00000409769 PDZRN3Q9UPQ7 1066 aa10.78□□□□□ -0.68
CLK1-203ENST00000409769 GCGRP47871 477 aa10.77□□□□□ -0.69
CLK1-203ENST00000409769 GRIPAP1Q4V328 841 aa10.77□□□□□ -0.69
CLK1-203ENST00000409769 TRAF7Q6Q0C0 670 aa10.77□□□□□ -0.69
CLK1-203ENST00000409769 SPSB2Q99619 263 aa10.77□□□□□ -0.69
CLK1-203ENST00000409769 PUS10Q3MIT2 529 aaKnown RBP10.76□□□□□ -0.69
CLK1-203ENST00000409769 MORN1Q5T089 497 aa10.76□□□□□ -0.69
CLK1-203ENST00000409769 SPRYD7Q5W111 196 aa10.75□□□□□ -0.69
CLK1-203ENST00000409769 ZNF598Q86UK7 904 aaKnown RBP10.75□□□□□ -0.69
CLK1-203ENST00000409769 PHOX2BQ99453 314 aa10.75□□□□□ -0.69
CLK1-203ENST00000409769 SALL2Q9Y467 1007 aaPredicted RBP10.75□□□□□ -0.69
CLK1-203ENST00000409769 MINK1Q8N4C8 1332 aaPredicted RBP10.75□□□□□ -0.69
CLK1-203ENST00000409769 FUT2Q10981 343 aa10.74□□□□□ -0.69
CLK1-203ENST00000409769 FMNL1O95466 1100 aaPredicted RBP10.73□□□□□ -0.69
CLK1-203ENST00000409769 PPEF1O14829 653 aaPredicted RBP10.72□□□□□ -0.69
CLK1-203ENST00000409769 IRF6O14896 467 aa10.72□□□□□ -0.69
CLK1-203ENST00000409769 PRR20EP86478 221 aa10.72□□□□□ -0.69
CLK1-203ENST00000409769 PRR20CP86479 221 aa10.72□□□□□ -0.69
CLK1-203ENST00000409769 PRR20DP86480 221 aa10.72□□□□□ -0.69
CLK1-203ENST00000409769 PRR20BP86481 221 aa10.72□□□□□ -0.69
CLK1-203ENST00000409769 PRR20AP86496 221 aa10.72□□□□□ -0.69
CLK1-203ENST00000409769 NLRP7Q8WX94 980 aa10.72□□□□□ -0.69
CLK1-203ENST00000409769 THAP11Q96EK4 314 aa10.71□□□□□ -0.69
CLK1-203ENST00000409769 EMID1Q96A84 441 aaPredicted RBP10.7□□□□□ -0.7
CLK1-203ENST00000409769 CD46P15529 392 aa10.69□□□□□ -0.7
CLK1-203ENST00000409769 LIAT1Q6ZQX7 453 aa10.69□□□□□ -0.7
CLK1-203ENST00000409769 SLC27A5Q9Y2P5 690 aa10.69□□□□□ -0.7
CLK1-203ENST00000409769 Q3C1V9 767 aa10.68□□□□□ -0.7
CLK1-203ENST00000409769 ZNF697Q5TEC3 545 aa10.68□□□□□ -0.7
CLK1-203ENST00000409769 LMOD2Q6P5Q4 547 aa10.68□□□□□ -0.7
CLK1-203ENST00000409769 RPIAP49247 311 aa10.67□□□□□ -0.7
CLK1-203ENST00000409769 TRIM67Q6ZTA4 783 aa10.67□□□□□ -0.7
CLK1-203ENST00000409769 USP46P62068 366 aa10.66□□□□□ -0.7
CLK1-203ENST00000409769 MSS51Q4VC12 460 aa10.66□□□□□ -0.7
CLK1-203ENST00000409769 BRICD5Q6PL45 260 aa10.66□□□□□ -0.7
CLK1-203ENST00000409769 LCE2BO14633 110 aa10.65□□□□□ -0.7
CLK1-203ENST00000409769 KDM4AO75164 1064 aa10.64□□□□□ -0.71
CLK1-203ENST00000409769 DGAT1O75907 488 aa10.64□□□□□ -0.71
CLK1-203ENST00000409769 CLCN1P35523 988 aa10.64□□□□□ -0.71
CLK1-203ENST00000409769 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.64□□□□□ -0.71
CLK1-203ENST00000409769 CCDC102AQ96A19 550 aa10.64□□□□□ -0.71
CLK1-203ENST00000409769 GDF9O60383 454 aa10.63□□□□□ -0.71
CLK1-203ENST00000409769 MDM2Q00987 491 aaPredicted RBP10.63□□□□□ -0.71
CLK1-203ENST00000409769 PKDCCQ504Y2 493 aa10.63□□□□□ -0.71
CLK1-203ENST00000409769 PLA2G2CQ5R387 149 aa10.63□□□□□ -0.71
CLK1-203ENST00000409769 GPCPD1Q9NPB8 672 aa10.63□□□□□ -0.71
CLK1-203ENST00000409769 CD2BP2O95400 341 aaKnown RBP10.62□□□□□ -0.71
CLK1-203ENST00000409769 FAM160A2Q8N612 972 aaPredicted RBP10.62□□□□□ -0.71
CLK1-203ENST00000409769 FCF1Q9Y324 198 aaKnown RBP10.62□□□□□ -0.71
CLK1-203ENST00000409769 KRI1Q8N9T8 703 aaKnown RBP10.6□□□□□ -0.71
CLK1-203ENST00000409769 ZBTB24O43167 697 aaPredicted RBP10.59□□□□□ -0.71
CLK1-203ENST00000409769 RNF19BQ6ZMZ0 732 aa10.59□□□□□ -0.71
CLK1-203ENST00000409769 MMP16P51512 607 aa10.57□□□□□ -0.72
CLK1-203ENST00000409769 FAM217BQ9NTX9 383 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms