RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 TMEM2Q9UHN6 1383 aa18.69■□□□□ 0.58
SMARCB1-203ENST00000407082 SETD5Q9C0A6 1442 aa18.69■□□□□ 0.58
SMARCB1-203ENST00000407082 SLAIN2Q9P270 581 aa18.69■□□□□ 0.58
SMARCB1-203ENST00000407082 DUOX2Q9NRD8 1548 aa18.66■□□□□ 0.58
SMARCB1-203ENST00000407082 UPF1Q92900 1129 aaKnown RBP eCLIP18.66■□□□□ 0.58
SMARCB1-203ENST00000407082 MSH6P52701 1360 aa18.66■□□□□ 0.58
SMARCB1-203ENST00000407082 JCADQ9P266 1359 aa18.66■□□□□ 0.58
SMARCB1-203ENST00000407082 MROH1Q8NDA8 1641 aa18.65■□□□□ 0.58
SMARCB1-203ENST00000407082 EIF2AK4Q9P2K8 1649 aaKnown RBP18.65■□□□□ 0.58
SMARCB1-203ENST00000407082 IDI1Q13907 227 aa18.65■□□□□ 0.58
SMARCB1-203ENST00000407082 PIK3C2BO00750 1634 aa18.63■□□□□ 0.57
SMARCB1-203ENST00000407082 PHLPP1O60346 1717 aa18.63■□□□□ 0.57
SMARCB1-203ENST00000407082 C14orf37Q86TY3 774 aa18.62■□□□□ 0.57
SMARCB1-203ENST00000407082 ARHGAP31Q2M1Z3 1444 aa18.61■□□□□ 0.57
SMARCB1-203ENST00000407082 ERBINQ96RT1 1412 aa18.61■□□□□ 0.57
SMARCB1-203ENST00000407082 ANKRD50Q9ULJ7 1429 aa18.61■□□□□ 0.57
SMARCB1-203ENST00000407082 RAB3GAP2Q9H2M9 1393 aa18.61■□□□□ 0.57
SMARCB1-203ENST00000407082 ZNF772Q68DY9 489 aaPredicted RBP18.61■□□□□ 0.57
SMARCB1-203ENST00000407082 KANK1Q14678 1352 aa18.6■□□□□ 0.57
SMARCB1-203ENST00000407082 EFCAB6Q5THR3 1501 aa18.59■□□□□ 0.57
SMARCB1-203ENST00000407082 ACIN1Q9UKV3 1341 aaKnown RBP18.59■□□□□ 0.57
SMARCB1-203ENST00000407082 PRDM15P57071 1507 aaPredicted RBP18.59■□□□□ 0.57
SMARCB1-203ENST00000407082 HFM1A2PYH4 1435 aa18.58■□□□□ 0.57
SMARCB1-203ENST00000407082 NAIPQ13075 1403 aa18.58■□□□□ 0.57
SMARCB1-203ENST00000407082 TIMELESSQ9UNS1 1208 aa18.58■□□□□ 0.56
SMARCB1-203ENST00000407082 NUTM2BA6NNL0 878 aaPredicted RBP18.57■□□□□ 0.56
SMARCB1-203ENST00000407082 NUTM2EB1AL46 878 aaPredicted RBP18.57■□□□□ 0.56
SMARCB1-203ENST00000407082 RXRBP28702 533 aa18.57■□□□□ 0.56
SMARCB1-203ENST00000407082 NUTM2AQ8IVF1 878 aaPredicted RBP18.57■□□□□ 0.56
SMARCB1-203ENST00000407082 PPP1R15AO75807 674 aaPredicted RBP18.56■□□□□ 0.56
SMARCB1-203ENST00000407082 SPATA31A6Q5VVP1 1343 aa18.55■□□□□ 0.56
SMARCB1-203ENST00000407082 TET3O43151 1660 aa18.55■□□□□ 0.56
SMARCB1-203ENST00000407082 NKTRP30414 1462 aaKnown RBP18.54■□□□□ 0.56
SMARCB1-203ENST00000407082 CENPBP07199 599 aaPredicted RBP18.53■□□□□ 0.56
SMARCB1-203ENST00000407082 LRP6O75581 1613 aa18.52■□□□□ 0.56
SMARCB1-203ENST00000407082 GCC2Q8IWJ2 1684 aa18.51■□□□□ 0.55
SMARCB1-203ENST00000407082 ATF3P18847 181 aa18.51■□□□□ 0.55
SMARCB1-203ENST00000407082 HDGFP51858 240 aaKnown RBP18.5■□□□□ 0.55
SMARCB1-203ENST00000407082 CHGAP10645 457 aaKnown RBP18.49■□□□□ 0.55
SMARCB1-203ENST00000407082 SLC52A1Q9NWF4 448 aa18.49■□□□□ 0.55
SMARCB1-203ENST00000407082 COL16A1Q07092 1604 aaPredicted RBP18.49■□□□□ 0.55
SMARCB1-203ENST00000407082 NWD1Q149M9 1564 aa18.48■□□□□ 0.55
SMARCB1-203ENST00000407082 CADPS2Q86UW7 1296 aa18.48■□□□□ 0.55
SMARCB1-203ENST00000407082 NUTM2DQ5VT03 806 aaPredicted RBP18.47■□□□□ 0.55
SMARCB1-203ENST00000407082 KDM5AP29375 1690 aaKnown RBP18.46■□□□□ 0.55
SMARCB1-203ENST00000407082 AFF2P51816 1311 aa18.46■□□□□ 0.55
SMARCB1-203ENST00000407082 NUP155O75694 1391 aa18.45■□□□□ 0.54
SMARCB1-203ENST00000407082 ADGRB3O60242 1522 aa18.45■□□□□ 0.54
SMARCB1-203ENST00000407082 C19orf44Q9H6X5 657 aa18.45■□□□□ 0.54
SMARCB1-203ENST00000407082 TBX22Q9Y458 520 aa18.44■□□□□ 0.54
SMARCB1-203ENST00000407082 PLEKHG1Q9ULL1 1385 aa18.43■□□□□ 0.54
SMARCB1-203ENST00000407082 RIMS2Q9UQ26 1411 aa18.43■□□□□ 0.54
SMARCB1-203ENST00000407082 CHD2O14647 1828 aaKnown RBP18.42■□□□□ 0.54
SMARCB1-203ENST00000407082 NOS1P29475 1434 aa18.42■□□□□ 0.54
SMARCB1-203ENST00000407082 UNC13BO14795 1591 aa18.42■□□□□ 0.54
SMARCB1-203ENST00000407082 C8orf37Q96NL8 207 aa18.41■□□□□ 0.54
SMARCB1-203ENST00000407082 QTRT2Q9H974 415 aaKnown RBP18.41■□□□□ 0.54
SMARCB1-203ENST00000407082 LMTK2Q8IWU2 1503 aa18.4■□□□□ 0.54
SMARCB1-203ENST00000407082 BRINP3Q76B58 766 aa18.4■□□□□ 0.54
SMARCB1-203ENST00000407082 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.39■□□□□ 0.53
SMARCB1-203ENST00000407082 NCOA3Q9Y6Q9 1424 aa18.39■□□□□ 0.53
SMARCB1-203ENST00000407082 SHPRHQ149N8 1683 aa18.38■□□□□ 0.53
SMARCB1-203ENST00000407082 ZFYVE9O95405 1425 aa18.38■□□□□ 0.53
SMARCB1-203ENST00000407082 RBM6P78332 1123 aaKnown RBP18.37■□□□□ 0.53
SMARCB1-203ENST00000407082 AMOTL2Q9Y2J4 779 aa18.37■□□□□ 0.53
SMARCB1-203ENST00000407082 CDK12Q9NYV4 1490 aaPredicted RBP18.37■□□□□ 0.53
SMARCB1-203ENST00000407082 AHDC1Q5TGY3 1603 aaPredicted RBP18.37■□□□□ 0.53
SMARCB1-203ENST00000407082 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.37■□□□□ 0.53
SMARCB1-203ENST00000407082 IQGAP3Q86VI3 1631 aa18.36■□□□□ 0.53
SMARCB1-203ENST00000407082 SLC4A1APQ9BWU0 796 aaKnown RBP18.36■□□□□ 0.53
SMARCB1-203ENST00000407082 MYO5BQ9ULV0 1848 aa18.35■□□□□ 0.53
SMARCB1-203ENST00000407082 LRRC59Q96AG4 307 aaKnown RBP18.34■□□□□ 0.53
SMARCB1-203ENST00000407082 NGLY1Q96IV0 654 aa18.34■□□□□ 0.53
SMARCB1-203ENST00000407082 ADAMTS2O95450 1211 aa18.33■□□□□ 0.52
SMARCB1-203ENST00000407082 DDX17Q92841 729 aaKnown RBP18.33■□□□□ 0.52
SMARCB1-203ENST00000407082 MPHOSPH9Q99550 1183 aa18.33■□□□□ 0.52
SMARCB1-203ENST00000407082 RGS12O14924 1447 aa18.32■□□□□ 0.52
SMARCB1-203ENST00000407082 ZRANB1Q9UGI0 708 aa18.31■□□□□ 0.52
SMARCB1-203ENST00000407082 ADAMTS13Q76LX8 1427 aa18.31■□□□□ 0.52
SMARCB1-203ENST00000407082 FOXD1Q16676 465 aa18.29■□□□□ 0.52
SMARCB1-203ENST00000407082 TMEM131LA2VDJ0 1609 aa18.29■□□□□ 0.52
SMARCB1-203ENST00000407082 DIP2AQ14689 1571 aa18.29■□□□□ 0.52
SMARCB1-203ENST00000407082 PIK3R4Q99570 1358 aa18.29■□□□□ 0.52
SMARCB1-203ENST00000407082 RPRD2Q5VT52 1461 aaKnown RBP18.28■□□□□ 0.52
SMARCB1-203ENST00000407082 ASXL1Q8IXJ9 1541 aa18.27■□□□□ 0.51
SMARCB1-203ENST00000407082 ATAD2Q6PL18 1390 aa18.27■□□□□ 0.51
SMARCB1-203ENST00000407082 E9PCH4 1651 aa18.26■□□□□ 0.51
SMARCB1-203ENST00000407082 PTPRUQ92729 1446 aa18.25■□□□□ 0.51
SMARCB1-203ENST00000407082 NEUROD1Q13562 356 aa18.25■□□□□ 0.51
SMARCB1-203ENST00000407082 MIER1Q8N108 512 aa18.25■□□□□ 0.51
SMARCB1-203ENST00000407082 USP21Q9UK80 565 aa18.25■□□□□ 0.51
SMARCB1-203ENST00000407082 TONSLQ96HA7 1378 aa18.25■□□□□ 0.51
SMARCB1-203ENST00000407082 TRPM2O94759 1503 aa18.23■□□□□ 0.51
SMARCB1-203ENST00000407082 PNPLA6Q8IY17 1366 aa18.23■□□□□ 0.51
SMARCB1-203ENST00000407082 MST1RQ04912 1400 aa18.23■□□□□ 0.51
SMARCB1-203ENST00000407082 SRCAPQ6ZRS2 3230 aa18.22■□□□□ 0.51
SMARCB1-203ENST00000407082 ZNF326Q5BKZ1 582 aaKnown RBP18.21■□□□□ 0.51
SMARCB1-203ENST00000407082 SIN3AQ96ST3 1273 aa18.21■□□□□ 0.51
SMARCB1-203ENST00000407082 TRPC5Q9UL62 973 aaPredicted RBP18.21■□□□□ 0.51
SMARCB1-203ENST00000407082 DCCP43146 1447 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms