RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 PMFBP1Q8TBY8 1022 aa11.76□□□□□ -0.53
LIG4-202ENST00000405925 ANP32AP39687 249 aaKnown RBP11.76□□□□□ -0.53
LIG4-202ENST00000405925 NUTM2GQ5VZR2 741 aa11.76□□□□□ -0.53
LIG4-202ENST00000405925 ERCC6L2Q5T890 1561 aa11.76□□□□□ -0.53
LIG4-202ENST00000405925 CDK19Q9BWU1 502 aa11.75□□□□□ -0.53
LIG4-202ENST00000405925 GOLGA2Q08379 1002 aa11.75□□□□□ -0.53
LIG4-202ENST00000405925 CCDC9Q9Y3X0 531 aaKnown RBP11.75□□□□□ -0.53
LIG4-202ENST00000405925 CABP1Q9NZU7 370 aa11.74□□□□□ -0.53
LIG4-202ENST00000405925 SHANK2Q9UPX8 1470 aa11.74□□□□□ -0.53
LIG4-202ENST00000405925 WAPLQ7Z5K2 1190 aa11.74□□□□□ -0.53
LIG4-202ENST00000405925 CALD1Q05682 793 aaKnown RBP11.74□□□□□ -0.53
LIG4-202ENST00000405925 UPF2Q9HAU5 1272 aaKnown RBP11.74□□□□□ -0.53
LIG4-202ENST00000405925 NOS1P29475 1434 aa11.74□□□□□ -0.53
LIG4-202ENST00000405925 NLRP6P59044 892 aa11.73□□□□□ -0.53
LIG4-202ENST00000405925 RCAN3Q9UKA8 241 aa11.73□□□□□ -0.53
LIG4-202ENST00000405925 APAF1O14727 1248 aa11.73□□□□□ -0.53
LIG4-202ENST00000405925 ESCO1Q5FWF5 840 aa11.73□□□□□ -0.53
LIG4-202ENST00000405925 RTEL1-TNFRSF6BF6WH68 1400 aa11.73□□□□□ -0.53
LIG4-202ENST00000405925 UHRF1BP1LA0JNW5 1464 aa11.72□□□□□ -0.53
LIG4-202ENST00000405925 DIAPH1O60610 1272 aaKnown RBP11.72□□□□□ -0.53
LIG4-202ENST00000405925 B4GALNT3Q6L9W6 998 aa11.72□□□□□ -0.53
LIG4-202ENST00000405925 RTL5Q5HYW3 569 aaPredicted RBP11.71□□□□□ -0.53
LIG4-202ENST00000405925 FAM135AQ9P2D6 1515 aa11.71□□□□□ -0.53
LIG4-202ENST00000405925 MAPKBP1O60336 1514 aa11.71□□□□□ -0.53
LIG4-202ENST00000405925 MTHFSP49914 203 aa11.71□□□□□ -0.53
LIG4-202ENST00000405925 PPP4R2Q9NY27 417 aa11.71□□□□□ -0.53
LIG4-202ENST00000405925 DNMT1P26358 1616 aaKnown RBP11.71□□□□□ -0.53
LIG4-202ENST00000405925 TNRQ92752 1358 aa11.71□□□□□ -0.53
LIG4-202ENST00000405925 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.71□□□□□ -0.54
LIG4-202ENST00000405925 C11orf95C9JLR9 678 aaPredicted RBP11.71□□□□□ -0.54
LIG4-202ENST00000405925 MS4A1P11836 297 aa11.71□□□□□ -0.54
LIG4-202ENST00000405925 LMOD3Q0VAK6 560 aa11.69□□□□□ -0.54
LIG4-202ENST00000405925 ABTB2Q8N961 1025 aa11.69□□□□□ -0.54
LIG4-202ENST00000405925 RBM33Q96EV2 1170 aaKnown RBP11.69□□□□□ -0.54
LIG4-202ENST00000405925 PDE3BQ13370 1112 aa11.69□□□□□ -0.54
LIG4-202ENST00000405925 HMOX1P09601 288 aa11.68□□□□□ -0.54
LIG4-202ENST00000405925 C14orf93Q9H972 538 aaKnown RBP11.68□□□□□ -0.54
LIG4-202ENST00000405925 ATP7AQ04656 1500 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 GPRASP1Q5JY77 1395 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 RGS3P49796 1198 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 AMOTL2Q9Y2J4 779 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 CCDC61Q9Y6R9 512 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 PPP2R1AP30153 589 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 ADGRL2O95490 1459 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 ELL2O00472 640 aaPredicted RBP11.67□□□□□ -0.54
LIG4-202ENST00000405925 SMC4Q9NTJ3 1288 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 ZNF330Q9Y3S2 320 aaPredicted RBP11.67□□□□□ -0.54
LIG4-202ENST00000405925 ATAD2Q6PL18 1390 aa11.67□□□□□ -0.54
LIG4-202ENST00000405925 EVA1CP58658 441 aa11.66□□□□□ -0.54
LIG4-202ENST00000405925 NUDT16Q96DE0 195 aaKnown RBP11.66□□□□□ -0.54
LIG4-202ENST00000405925 CLUAP1Q96AJ1 413 aa11.66□□□□□ -0.54
LIG4-202ENST00000405925 NEO1Q92859 1461 aa11.66□□□□□ -0.54
LIG4-202ENST00000405925 MBD5Q9P267 1494 aa11.66□□□□□ -0.54
LIG4-202ENST00000405925 IPO8O15397 1037 aaKnown RBP11.65□□□□□ -0.54
LIG4-202ENST00000405925 CHMP4BQ9H444 224 aaKnown RBP11.65□□□□□ -0.54
LIG4-202ENST00000405925 PZPP20742 1482 aa11.65□□□□□ -0.54
LIG4-202ENST00000405925 ZBED9Q6R2W3 1325 aa11.65□□□□□ -0.54
LIG4-202ENST00000405925 HSP90AA1P07900 732 aaKnown RBP11.65□□□□□ -0.54
LIG4-202ENST00000405925 ADAMTS8Q9UP79 889 aa11.65□□□□□ -0.54
LIG4-202ENST00000405925 ZNF692Q9BU19 519 aaPredicted RBP11.65□□□□□ -0.55
LIG4-202ENST00000405925 STK31Q9BXU1 1019 aa11.64□□□□□ -0.55
LIG4-202ENST00000405925 BRD4O60885 1362 aaPredicted RBP11.64□□□□□ -0.55
LIG4-202ENST00000405925 ZMYM3Q14202 1370 aa11.64□□□□□ -0.55
LIG4-202ENST00000405925 BCL2L13Q9BXK5 485 aa11.64□□□□□ -0.55
LIG4-202ENST00000405925 NPHP1O15259 732 aa11.64□□□□□ -0.55
LIG4-202ENST00000405925 XPCQ01831 940 aaPredicted RBP11.64□□□□□ -0.55
LIG4-202ENST00000405925 RIPK4P57078 832 aa11.63□□□□□ -0.55
LIG4-202ENST00000405925 ATP10AO60312 1499 aa11.63□□□□□ -0.55
LIG4-202ENST00000405925 RUNDC1Q96C34 613 aa11.63□□□□□ -0.55
LIG4-202ENST00000405925 YEATS2Q9ULM3 1422 aa11.63□□□□□ -0.55
LIG4-202ENST00000405925 C1orf141Q5JVX7 400 aa11.62□□□□□ -0.55
LIG4-202ENST00000405925 SCAF11Q99590 1463 aaKnown RBP11.62□□□□□ -0.55
LIG4-202ENST00000405925 TTC37Q6PGP7 1564 aa11.62□□□□□ -0.55
LIG4-202ENST00000405925 TEFQ10587 303 aa11.62□□□□□ -0.55
LIG4-202ENST00000405925 ITPRIPQ8IWB1 547 aa11.62□□□□□ -0.55
LIG4-202ENST00000405925 NLRP2Q9NX02 1062 aa11.62□□□□□ -0.55
LIG4-202ENST00000405925 ZCCHC11Q5TAX3 1644 aaKnown RBP11.62□□□□□ -0.55
LIG4-202ENST00000405925 OS9Q13438 667 aaPredicted RBP11.61□□□□□ -0.55
LIG4-202ENST00000405925 CCDC184Q52MB2 194 aa11.61□□□□□ -0.55
LIG4-202ENST00000405925 E9PSI1 815 aa11.61□□□□□ -0.55
LIG4-202ENST00000405925 NSD3Q9BZ95 1437 aa11.61□□□□□ -0.55
LIG4-202ENST00000405925 MYO5CQ9NQX4 1742 aa11.6□□□□□ -0.55
LIG4-202ENST00000405925 WASLO00401 505 aaPredicted RBP11.6□□□□□ -0.55
LIG4-202ENST00000405925 PRAG1Q86YV5 1406 aa11.59□□□□□ -0.55
LIG4-202ENST00000405925 RIMS2Q9UQ26 1411 aa11.59□□□□□ -0.55
LIG4-202ENST00000405925 RAPGEF4Q8WZA2 1011 aa11.59□□□□□ -0.55
LIG4-202ENST00000405925 SLC4A10Q6U841 1118 aa11.59□□□□□ -0.55
LIG4-202ENST00000405925 TCP11L2Q8N4U5 519 aa11.59□□□□□ -0.55
LIG4-202ENST00000405925 SAMD9LQ8IVG5 1584 aa11.59□□□□□ -0.55
LIG4-202ENST00000405925 RRS1Q15050 365 aaKnown RBP11.59□□□□□ -0.55
LIG4-202ENST00000405925 CHMP4AQ9BY43 222 aa11.59□□□□□ -0.55
LIG4-202ENST00000405925 APBB1O00213 710 aa11.58□□□□□ -0.56
LIG4-202ENST00000405925 PLIN1O60240 522 aa11.58□□□□□ -0.56
LIG4-202ENST00000405925 PRKAR2BP31323 418 aa11.58□□□□□ -0.56
LIG4-202ENST00000405925 DISP3Q9P2K9 1392 aa11.58□□□□□ -0.56
LIG4-202ENST00000405925 FOXO3O43524 673 aa11.58□□□□□ -0.56
LIG4-202ENST00000405925 USP35Q9P2H5 1018 aa11.58□□□□□ -0.56
LIG4-202ENST00000405925 ARHGEF5Q12774 1597 aa11.58□□□□□ -0.56
LIG4-202ENST00000405925 TCERG1O14776 1098 aaKnown RBP11.57□□□□□ -0.56
LIG4-202ENST00000405925 HSPA2P54652 639 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms