RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 ADGRF5Q8IZF2 1346 aa35.79■■■■□ 3.32
CPNE1-205ENST00000401607 IDI1Q13907 227 aa35.78■■■■□ 3.32
CPNE1-205ENST00000401607 FBXO31Q5XUX0 539 aaPredicted RBP35.78■■■■□ 3.32
CPNE1-205ENST00000401607 IQGAP1P46940 1657 aa35.75■■■■□ 3.31
CPNE1-205ENST00000401607 SPATA31D1Q6ZQQ2 1576 aa35.75■■■■□ 3.31
CPNE1-205ENST00000401607 RPGRIP1LQ68CZ1 1315 aa35.75■■■■□ 3.31
CPNE1-205ENST00000401607 ARID4BQ4LE39 1312 aaPredicted RBP35.74■■■■□ 3.31
CPNE1-205ENST00000401607 TMEM131LA2VDJ0 1609 aa35.72■■■■□ 3.31
CPNE1-205ENST00000401607 NEXMIFQ5QGS0 1516 aa35.72■■■■□ 3.31
CPNE1-205ENST00000401607 MYO5BQ9ULV0 1848 aa35.68■■■■□ 3.3
CPNE1-205ENST00000401607 PIK3C2GO75747 1445 aa35.67■■■■□ 3.3
CPNE1-205ENST00000401607 SCAF11Q99590 1463 aaKnown RBP35.67■■■■□ 3.3
CPNE1-205ENST00000401607 CFAP70Q5T0N1 1121 aa35.66■■■■□ 3.3
CPNE1-205ENST00000401607 ANP32CO43423 234 aa35.66■■■■□ 3.3
CPNE1-205ENST00000401607 ZMYM3Q14202 1370 aa35.65■■■■□ 3.3
CPNE1-205ENST00000401607 ESF1Q9H501 851 aaKnown RBP35.64■■■■□ 3.3
CPNE1-205ENST00000401607 TESK2Q96S53 571 aa35.63■■■■□ 3.29
CPNE1-205ENST00000401607 SETBP1Q9Y6X0 1596 aa35.59■■■■□ 3.29
CPNE1-205ENST00000401607 POLR3GLQ9BT43 218 aa35.57■■■■□ 3.28
CPNE1-205ENST00000401607 ZFYVE9O95405 1425 aa35.57■■■■□ 3.28
CPNE1-205ENST00000401607 C14orf93Q9H972 538 aaKnown RBP35.55■■■■□ 3.28
CPNE1-205ENST00000401607 VGFO15240 615 aaPredicted RBP35.54■■■■□ 3.28
CPNE1-205ENST00000401607 DISP3Q9P2K9 1392 aa35.53■■■■□ 3.28
CPNE1-205ENST00000401607 ADGRB1O14514 1584 aa35.52■■■■□ 3.28
CPNE1-205ENST00000401607 NUTM2DQ5VT03 806 aaPredicted RBP35.51■■■■□ 3.28
CPNE1-205ENST00000401607 YTHDC1Q96MU7 727 aaKnown RBP35.51■■■■□ 3.28
CPNE1-205ENST00000401607 A2ML1A8K2U0 1454 aa35.5■■■■□ 3.27
CPNE1-205ENST00000401607 EIF3AQ14152 1382 aaKnown RBP35.5■■■■□ 3.27
CPNE1-205ENST00000401607 CCER2I3L3R5 266 aa35.5■■■■□ 3.27
CPNE1-205ENST00000401607 TMF1P82094 1093 aa35.45■■■■□ 3.27
CPNE1-205ENST00000401607 TNRQ92752 1358 aa35.44■■■■□ 3.26
CPNE1-205ENST00000401607 STAG3Q9UJ98 1225 aa35.44■■■■□ 3.26
CPNE1-205ENST00000401607 MYO3AQ8NEV4 1616 aa35.44■■■■□ 3.26
CPNE1-205ENST00000401607 FER1L4A9Z1Z3 1794 aa35.43■■■■□ 3.26
CPNE1-205ENST00000401607 C3P01024 1663 aa35.38■■■■□ 3.25
CPNE1-205ENST00000401607 PRKRIP1Q9H875 184 aaPredicted RBP35.38■■■■□ 3.25
CPNE1-205ENST00000401607 TMEM132EQ6IEE7 984 aa35.37■■■■□ 3.25
CPNE1-205ENST00000401607 ASXL1Q8IXJ9 1541 aa35.35■■■■□ 3.25
CPNE1-205ENST00000401607 KDM5AP29375 1690 aaKnown RBP35.35■■■■□ 3.25
CPNE1-205ENST00000401607 RIMS2Q9UQ26 1411 aa35.35■■■■□ 3.25
CPNE1-205ENST00000401607 CENPBP07199 599 aaPredicted RBP35.33■■■■□ 3.25
CPNE1-205ENST00000401607 CEBPAP49715 358 aaPredicted RBP35.31■■■■□ 3.24
CPNE1-205ENST00000401607 UBR1Q8IWV7 1749 aa35.31■■■■□ 3.24
CPNE1-205ENST00000401607 TRAK1Q9UPV9 953 aa35.3■■■■□ 3.24
CPNE1-205ENST00000401607 SBNO2Q9Y2G9 1366 aa35.3■■■■□ 3.24
CPNE1-205ENST00000401607 ALKQ9UM73 1620 aa35.28■■■■□ 3.24
CPNE1-205ENST00000401607 ARHGEF28Q8N1W1 1705 aaKnown RBP35.27■■■■□ 3.24
CPNE1-205ENST00000401607 CENPJQ9HC77 1338 aaPredicted RBP35.27■■■■□ 3.24
CPNE1-205ENST00000401607 NLRP1Q9C000 1473 aa35.26■■■■□ 3.24
CPNE1-205ENST00000401607 QRICH2Q9H0J4 1663 aa35.26■■■■□ 3.24
CPNE1-205ENST00000401607 CDCA8Q53HL2 280 aa35.25■■■■□ 3.23
CPNE1-205ENST00000401607 SLC24A1O60721 1099 aa35.24■■■■□ 3.23
CPNE1-205ENST00000401607 SENP3Q9H4L4 574 aaPredicted RBP35.23■■■■□ 3.23
CPNE1-205ENST00000401607 MYOM1P52179 1685 aa35.21■■■■□ 3.23
CPNE1-205ENST00000401607 SETD1AO15047 1707 aaKnown RBP35.2■■■■□ 3.23
CPNE1-205ENST00000401607 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.19■■■■□ 3.22
CPNE1-205ENST00000401607 PTPRMP28827 1452 aa35.19■■■■□ 3.22
CPNE1-205ENST00000401607 NRXN3Q9Y4C0 1643 aa35.19■■■■□ 3.22
CPNE1-205ENST00000401607 PER1O15534 1290 aaPredicted RBP35.18■■■■□ 3.22
CPNE1-205ENST00000401607 TMEM2Q9UHN6 1383 aa35.17■■■■□ 3.22
CPNE1-205ENST00000401607 YTHDC2Q9H6S0 1430 aaKnown RBP35.16■■■■□ 3.22
CPNE1-205ENST00000401607 PANK3Q9H999 370 aa35.15■■■■□ 3.22
CPNE1-205ENST00000401607 RIMS1Q86UR5 1692 aaKnown RBP35.15■■■■□ 3.22
CPNE1-205ENST00000401607 CCDC184Q52MB2 194 aa35.14■■■■□ 3.22
CPNE1-205ENST00000401607 ADAMTSL3P82987 1691 aa35.12■■■■□ 3.21
CPNE1-205ENST00000401607 PLPPR3Q6T4P5 718 aa35.11■■■■□ 3.21
CPNE1-205ENST00000401607 HDGFP51858 240 aaKnown RBP35.1■■■■□ 3.21
CPNE1-205ENST00000401607 CNGB1Q14028 1251 aaPredicted RBP35.1■■■■□ 3.21
CPNE1-205ENST00000401607 STK26Q9P289 416 aa35.1■■■■□ 3.21
CPNE1-205ENST00000401607 KTN1Q86UP2 1357 aaKnown RBP35.08■■■■□ 3.21
CPNE1-205ENST00000401607 TULP4Q9NRJ4 1543 aa35.05■■■■□ 3.2
CPNE1-205ENST00000401607 SLIT1O75093 1534 aa35.03■■■■□ 3.2
CPNE1-205ENST00000401607 ARHGAP23Q9P227 1491 aa35.03■■■■□ 3.2
CPNE1-205ENST00000401607 MRS2Q9HD23 443 aa35.02■■■■□ 3.2
CPNE1-205ENST00000401607 DLC1Q96QB1 1528 aa35.02■■■■□ 3.2
CPNE1-205ENST00000401607 LRPPRCP42704 1394 aaKnown RBP35.02■■■■□ 3.2
CPNE1-205ENST00000401607 PARD3Q8TEW0 1356 aa35.02■■■■□ 3.2
CPNE1-205ENST00000401607 RALBP1Q15311 655 aa35.02■■■■□ 3.2
CPNE1-205ENST00000401607 METP08581 1390 aa34.98■■■■□ 3.19
CPNE1-205ENST00000401607 LTKP29376 864 aa34.98■■■■□ 3.19
CPNE1-205ENST00000401607 PRAM1Q96QH2 718 aa34.98■■■■□ 3.19
CPNE1-205ENST00000401607 PLEKHG1Q9ULL1 1385 aa34.97■■■■□ 3.19
CPNE1-205ENST00000401607 EVC2Q86UK5 1308 aa34.96■■■■□ 3.19
CPNE1-205ENST00000401607 SAFB2Q14151 953 aaKnown RBP eCLIP34.96■■■■□ 3.193e-13■□□□□ 9.1
CPNE1-205ENST00000401607 ADAMTS13Q76LX8 1427 aa34.96■■■■□ 3.19
CPNE1-205ENST00000401607 ABCC11Q96J66 1382 aa34.96■■■■□ 3.19
CPNE1-205ENST00000401607 MYBBP1AQ9BQG0 1328 aaKnown RBP34.95■■■■□ 3.19
CPNE1-205ENST00000401607 CEP170BQ9Y4F5 1589 aaPredicted RBP34.95■■■■□ 3.19
CPNE1-205ENST00000401607 PUS7Q96PZ0 661 aaKnown RBP34.95■■■■□ 3.18
CPNE1-205ENST00000401607 TXNDC2Q86VQ3 553 aa34.92■■■■□ 3.18
CPNE1-205ENST00000401607 KNDC1Q76NI1 1749 aa34.92■■■■□ 3.18
CPNE1-205ENST00000401607 POGKQ9P215 609 aa34.92■■■■□ 3.18
CPNE1-205ENST00000401607 CC2D1BQ5T0F9 858 aaKnown RBP34.91■■■■□ 3.18
CPNE1-205ENST00000401607 KNSTRNQ9Y448 316 aa34.91■■■■□ 3.18
CPNE1-205ENST00000401607 THEMISQ8N1K5 641 aaPredicted RBP34.9■■■■□ 3.18
CPNE1-205ENST00000401607 AMER1Q5JTC6 1135 aaPredicted RBP34.9■■■■□ 3.18
CPNE1-205ENST00000401607 BCANQ96GW7 911 aa34.88■■■■□ 3.17
CPNE1-205ENST00000401607 EID1Q9Y6B2 187 aa34.88■■■■□ 3.17
CPNE1-205ENST00000401607 MED14O60244 1454 aa34.88■■■■□ 3.17
CPNE1-205ENST00000401607 TECPR2O15040 1411 aa34.87■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms