RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 NEURL4Q96JN8 1562 aa14.05□□□□□ -0.16
VPS53-203ENST00000401468 TNRQ92752 1358 aa14.05□□□□□ -0.16
VPS53-203ENST00000401468 ADGRL2O95490 1459 aa14.05□□□□□ -0.16
VPS53-203ENST00000401468 PZPP20742 1482 aa14.05□□□□□ -0.16
VPS53-203ENST00000401468 STRCP1A6NGW2 1772 aa14.04□□□□□ -0.16
VPS53-203ENST00000401468 GABBR2O75899 941 aa14.04□□□□□ -0.16
VPS53-203ENST00000401468 ZNF335Q9H4Z2 1342 aaPredicted RBP14.04□□□□□ -0.16
VPS53-203ENST00000401468 A2ML1A8K2U0 1454 aa14.04□□□□□ -0.16
VPS53-203ENST00000401468 UBR1Q8IWV7 1749 aa14.04□□□□□ -0.16
VPS53-203ENST00000401468 PTPRTO14522 1441 aa14.03□□□□□ -0.16
VPS53-203ENST00000401468 DUOX2Q9NRD8 1548 aa14.03□□□□□ -0.16
VPS53-203ENST00000401468 DEPDC5O75140 1603 aa14.02□□□□□ -0.16
VPS53-203ENST00000401468 KIF15Q9NS87 1388 aa14.02□□□□□ -0.17
VPS53-203ENST00000401468 FAM50AQ14320 339 aaKnown RBP14.01□□□□□ -0.17
VPS53-203ENST00000401468 IQGAP1P46940 1657 aa14.01□□□□□ -0.17
VPS53-203ENST00000401468 GCC2Q8IWJ2 1684 aa14.01□□□□□ -0.17
VPS53-203ENST00000401468 PIK3C2BO00750 1634 aa14□□□□□ -0.17
VPS53-203ENST00000401468 UGGT1Q9NYU2 1555 aa14□□□□□ -0.17
VPS53-203ENST00000401468 PRDM15P57071 1507 aaPredicted RBP13.99□□□□□ -0.17
VPS53-203ENST00000401468 ERVK-7P63135 1459 aa13.99□□□□□ -0.17
VPS53-203ENST00000401468 PLA2R1Q13018 1463 aa13.99□□□□□ -0.17
VPS53-203ENST00000401468 ROCK1Q13464 1354 aa13.98□□□□□ -0.17
VPS53-203ENST00000401468 FAM135AQ9P2D6 1515 aa13.97□□□□□ -0.17
VPS53-203ENST00000401468 XIRP1Q702N8 1843 aaKnown RBP13.95□□□□□ -0.18
VPS53-203ENST00000401468 ZRANB1Q9UGI0 708 aa13.95□□□□□ -0.18
VPS53-203ENST00000401468 ITGAEP38570 1179 aa13.94□□□□□ -0.18
VPS53-203ENST00000401468 SYNMO15061 1565 aa13.93□□□□□ -0.18
VPS53-203ENST00000401468 ERBINQ96RT1 1412 aa13.93□□□□□ -0.18
VPS53-203ENST00000401468 NLRP1Q9C000 1473 aa13.93□□□□□ -0.18
VPS53-203ENST00000401468 VWDEQ8N2E2 1590 aa13.92□□□□□ -0.18
VPS53-203ENST00000401468 ANKRD30AQ9BXX3 1397 aa13.92□□□□□ -0.18
VPS53-203ENST00000401468 HFM1A2PYH4 1435 aa13.91□□□□□ -0.18
VPS53-203ENST00000401468 PKD2Q13563 968 aa13.91□□□□□ -0.18
VPS53-203ENST00000401468 FKBP8Q14318 412 aa13.91□□□□□ -0.18
VPS53-203ENST00000401468 MNX1P50219 401 aaPredicted RBP13.9□□□□□ -0.18
VPS53-203ENST00000401468 E9PCH4 1651 aa13.9□□□□□ -0.18
VPS53-203ENST00000401468 NAIPQ13075 1403 aa13.9□□□□□ -0.19
VPS53-203ENST00000401468 PAK3O75914 559 aaPredicted RBP13.89□□□□□ -0.19
VPS53-203ENST00000401468 EFCAB6Q5THR3 1501 aa13.89□□□□□ -0.19
VPS53-203ENST00000401468 NPHP4O75161 1426 aaPredicted RBP13.89□□□□□ -0.19
VPS53-203ENST00000401468 TET3O43151 1660 aa13.88□□□□□ -0.19
VPS53-203ENST00000401468 UNC13BO14795 1591 aa13.88□□□□□ -0.19
VPS53-203ENST00000401468 UBAP1LF5GYI3 381 aa13.88□□□□□ -0.19
VPS53-203ENST00000401468 TRIM26Q12899 539 aaPredicted RBP13.88□□□□□ -0.19
VPS53-203ENST00000401468 ZNF579Q8NAF0 562 aaKnown RBP13.88□□□□□ -0.19
VPS53-203ENST00000401468 ANKLE2Q86XL3 938 aa13.87□□□□□ -0.19
VPS53-203ENST00000401468 CLCN6P51797 869 aa13.86□□□□□ -0.19
VPS53-203ENST00000401468 PIP4K2BP78356 416 aa13.86□□□□□ -0.19
VPS53-203ENST00000401468 THEMISQ8N1K5 641 aaPredicted RBP13.86□□□□□ -0.19
VPS53-203ENST00000401468 KANK1Q14678 1352 aa13.85□□□□□ -0.19
VPS53-203ENST00000401468 ANKRD50Q9ULJ7 1429 aa13.85□□□□□ -0.19
VPS53-203ENST00000401468 ALKQ9UM73 1620 aa13.84□□□□□ -0.19
VPS53-203ENST00000401468 LTKP29376 864 aa13.84□□□□□ -0.19
VPS53-203ENST00000401468 MED14O60244 1454 aa13.83□□□□□ -0.2
VPS53-203ENST00000401468 SCAF11Q99590 1463 aaKnown RBP13.83□□□□□ -0.2
VPS53-203ENST00000401468 LMTK2Q8IWU2 1503 aa13.82□□□□□ -0.2
VPS53-203ENST00000401468 PLEKHG5O94827 1062 aa13.82□□□□□ -0.2
VPS53-203ENST00000401468 IQGAP3Q86VI3 1631 aa13.82□□□□□ -0.2
VPS53-203ENST00000401468 KDM5AP29375 1690 aaKnown RBP13.82□□□□□ -0.2
VPS53-203ENST00000401468 ARHGAP31Q2M1Z3 1444 aa13.81□□□□□ -0.2
VPS53-203ENST00000401468 ADGRB3O60242 1522 aa13.81□□□□□ -0.2
VPS53-203ENST00000401468 CPS1P31327 1500 aa13.81□□□□□ -0.2
VPS53-203ENST00000401468 MIER1Q8N108 512 aa13.81□□□□□ -0.2
VPS53-203ENST00000401468 SLIT1O75093 1534 aa13.8□□□□□ -0.2
VPS53-203ENST00000401468 HSPA1LP34931 641 aa13.8□□□□□ -0.2
VPS53-203ENST00000401468 IDI1Q13907 227 aa13.8□□□□□ -0.2
VPS53-203ENST00000401468 TXNDC2Q86VQ3 553 aa13.8□□□□□ -0.2
VPS53-203ENST00000401468 RBM33Q96EV2 1170 aaKnown RBP13.8□□□□□ -0.2
VPS53-203ENST00000401468 SPHKAPQ2M3C7 1700 aa13.8□□□□□ -0.2
VPS53-203ENST00000401468 SETD5Q9C0A6 1442 aa13.8□□□□□ -0.2
VPS53-203ENST00000401468 ARHGAP23Q9P227 1491 aa13.8□□□□□ -0.2
VPS53-203ENST00000401468 TMEM131LA2VDJ0 1609 aa13.79□□□□□ -0.2
VPS53-203ENST00000401468 LRRC7Q96NW7 1537 aa13.79□□□□□ -0.2
VPS53-203ENST00000401468 HRCP23327 699 aa13.78□□□□□ -0.2
VPS53-203ENST00000401468 NUTM2DQ5VT03 806 aaPredicted RBP13.78□□□□□ -0.2
VPS53-203ENST00000401468 CHD2O14647 1828 aaKnown RBP13.77□□□□□ -0.21
VPS53-203ENST00000401468 NOS1P29475 1434 aa13.77□□□□□ -0.21
VPS53-203ENST00000401468 ACIN1Q9UKV3 1341 aaKnown RBP13.76□□□□□ -0.21
VPS53-203ENST00000401468 CHGAP10645 457 aaKnown RBP13.76□□□□□ -0.21
VPS53-203ENST00000401468 PHF12Q96QT6 1004 aa13.76□□□□□ -0.21
VPS53-203ENST00000401468 SLC26A8Q96RN1 970 aa13.76□□□□□ -0.21
VPS53-203ENST00000401468 RAB3GAP2Q9H2M9 1393 aa13.75□□□□□ -0.21
VPS53-203ENST00000401468 TMEM2Q9UHN6 1383 aa13.75□□□□□ -0.21
VPS53-203ENST00000401468 BCANQ96GW7 911 aa13.74□□□□□ -0.21
VPS53-203ENST00000401468 DCBLD2Q96PD2 775 aa13.74□□□□□ -0.21
VPS53-203ENST00000401468 KIF1BO60333 1816 aa13.74□□□□□ -0.21
VPS53-203ENST00000401468 PLCD3Q8N3E9 789 aa13.73□□□□□ -0.21
VPS53-203ENST00000401468 EID1Q9Y6B2 187 aa13.73□□□□□ -0.21
VPS53-203ENST00000401468 POTEIP0CG38 1075 aa13.72□□□□□ -0.21
VPS53-203ENST00000401468 NUP155O75694 1391 aa13.71□□□□□ -0.21
VPS53-203ENST00000401468 GALR2O43603 387 aaPredicted RBP13.71□□□□□ -0.21
VPS53-203ENST00000401468 CLTCL1P53675 1640 aa13.71□□□□□ -0.22
VPS53-203ENST00000401468 RPRD2Q5VT52 1461 aaKnown RBP13.7□□□□□ -0.22
VPS53-203ENST00000401468 TSPYL2Q9H2G4 693 aaPredicted RBP13.7□□□□□ -0.22
VPS53-203ENST00000401468 RIMS2Q9UQ26 1411 aa13.7□□□□□ -0.22
VPS53-203ENST00000401468 ROBO1Q9Y6N7 1651 aa13.69□□□□□ -0.22
VPS53-203ENST00000401468 TOM1O60784 492 aa13.69□□□□□ -0.22
VPS53-203ENST00000401468 ZFYVE9O95405 1425 aa13.68□□□□□ -0.22
VPS53-203ENST00000401468 NWD1Q149M9 1564 aa13.67□□□□□ -0.22
VPS53-203ENST00000401468 PPP1R15AO75807 674 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms