RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 EHBP1L1Q8N3D4 1523 aa13.66□□□□□ -0.22
HPS4-202ENST00000398145 PRKCSHP14314 528 aaPredicted RBP13.66□□□□□ -0.22
HPS4-202ENST00000398145 BCAR3O75815 825 aa13.65□□□□□ -0.22
HPS4-202ENST00000398145 HTATSF1O43719 755 aaKnown RBP13.65□□□□□ -0.22
HPS4-202ENST00000398145 REC8O95072 547 aa13.65□□□□□ -0.22
HPS4-202ENST00000398145 PDZRN3Q9UPQ7 1066 aa13.65□□□□□ -0.22
HPS4-202ENST00000398145 NCOA1Q15788 1441 aa13.65□□□□□ -0.22
HPS4-202ENST00000398145 KIF16BQ96L93 1317 aa13.65□□□□□ -0.22
HPS4-202ENST00000398145 NASPP49321 788 aaPredicted RBP13.64□□□□□ -0.23
HPS4-202ENST00000398145 EVC2Q86UK5 1308 aa13.63□□□□□ -0.23
HPS4-202ENST00000398145 TCP11L2Q8N4U5 519 aa13.63□□□□□ -0.23
HPS4-202ENST00000398145 TAOK2Q9UL54 1235 aa13.62□□□□□ -0.23
HPS4-202ENST00000398145 ISY1Q9ULR0 285 aaKnown RBP13.62□□□□□ -0.23
HPS4-202ENST00000398145 RIPK4P57078 832 aa13.62□□□□□ -0.23
HPS4-202ENST00000398145 MAPKBP1O60336 1514 aa13.62□□□□□ -0.23
HPS4-202ENST00000398145 ANKRD30BQ9BXX2 1392 aa13.62□□□□□ -0.23
HPS4-202ENST00000398145 HDGFP51858 240 aaKnown RBP13.61□□□□□ -0.23
HPS4-202ENST00000398145 NUTM2DQ5VT03 806 aaPredicted RBP13.61□□□□□ -0.23
HPS4-202ENST00000398145 ATP6V1DQ9Y5K8 247 aa13.61□□□□□ -0.23
HPS4-202ENST00000398145 FOXD4L6Q3SYB3 417 aaPredicted RBP13.61□□□□□ -0.23
HPS4-202ENST00000398145 FOXD4L3Q6VB84 417 aaPredicted RBP13.61□□□□□ -0.23
HPS4-202ENST00000398145 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.6□□□□□ -0.23
HPS4-202ENST00000398145 API5Q9BZZ5 524 aaKnown RBP13.6□□□□□ -0.23
HPS4-202ENST00000398145 MCTP1Q6DN14 999 aa13.6□□□□□ -0.23
HPS4-202ENST00000398145 MCM4P33991 863 aa13.6□□□□□ -0.23
HPS4-202ENST00000398145 CHMP4AQ9BY43 222 aa13.6□□□□□ -0.23
HPS4-202ENST00000398145 SKAP1Q86WV1 359 aa13.6□□□□□ -0.23
HPS4-202ENST00000398145 DIAPH1O60610 1272 aaKnown RBP13.59□□□□□ -0.23
HPS4-202ENST00000398145 PTPRGP23470 1445 aa13.59□□□□□ -0.23
HPS4-202ENST00000398145 NINLQ9Y2I6 1382 aa13.58□□□□□ -0.23
HPS4-202ENST00000398145 RILPL2Q969X0 211 aa13.58□□□□□ -0.23
HPS4-202ENST00000398145 TPM2P07951 284 aa13.58□□□□□ -0.24
HPS4-202ENST00000398145 MTHFSP49914 203 aa13.58□□□□□ -0.24
HPS4-202ENST00000398145 INTS3Q68E01 1043 aaKnown RBP13.58□□□□□ -0.24
HPS4-202ENST00000398145 MAP7D2Q96T17 732 aa13.58□□□□□ -0.24
HPS4-202ENST00000398145 DAPK1P53355 1430 aa13.58□□□□□ -0.24
HPS4-202ENST00000398145 ROCK1Q13464 1354 aa13.58□□□□□ -0.24
HPS4-202ENST00000398145 VGFO15240 615 aaPredicted RBP13.58□□□□□ -0.24
HPS4-202ENST00000398145 C20orf194Q5TEA3 1177 aa13.57□□□□□ -0.24
HPS4-202ENST00000398145 GRPEL1Q9HAV7 217 aa13.57□□□□□ -0.24
HPS4-202ENST00000398145 R3HCC1Q9Y3T6 440 aaKnown RBP13.57□□□□□ -0.24
HPS4-202ENST00000398145 PCF11O94913 1555 aaKnown RBP13.57□□□□□ -0.24
HPS4-202ENST00000398145 SLFN5Q08AF3 891 aa13.56□□□□□ -0.24
HPS4-202ENST00000398145 AMER1Q5JTC6 1135 aaPredicted RBP13.56□□□□□ -0.24
HPS4-202ENST00000398145 GPATCH3Q96I76 525 aa13.56□□□□□ -0.24
HPS4-202ENST00000398145 AQRO60306 1485 aaKnown RBP eCLIP13.56□□□□□ -0.243e-8■■■■□ 23.8
HPS4-202ENST00000398145 CDC45O75419 566 aa13.56□□□□□ -0.24
HPS4-202ENST00000398145 SUPT6HQ7KZ85 1726 aaKnown RBP13.56□□□□□ -0.24
HPS4-202ENST00000398145 ESPNB1AK53 854 aa13.56□□□□□ -0.24
HPS4-202ENST00000398145 HDAC5Q9UQL6 1122 aa13.56□□□□□ -0.24
HPS4-202ENST00000398145 LMOD2Q6P5Q4 547 aa13.56□□□□□ -0.24
HPS4-202ENST00000398145 MTERF4Q7Z6M4 381 aaKnown RBP13.55□□□□□ -0.24
HPS4-202ENST00000398145 CCDC173Q0VFZ6 552 aa13.55□□□□□ -0.24
HPS4-202ENST00000398145 CAVIN1Q6NZI2 390 aaKnown RBP13.54□□□□□ -0.24
HPS4-202ENST00000398145 EXOSC9Q06265 439 aaKnown RBP13.53□□□□□ -0.24
HPS4-202ENST00000398145 ERBINQ96RT1 1412 aa13.53□□□□□ -0.24
HPS4-202ENST00000398145 GNAI1P63096 354 aa13.53□□□□□ -0.24
HPS4-202ENST00000398145 TPM4P67936 248 aa13.53□□□□□ -0.24
HPS4-202ENST00000398145 ANO2Q9NQ90 1003 aa13.53□□□□□ -0.24
HPS4-202ENST00000398145 RPRD2Q5VT52 1461 aaKnown RBP13.52□□□□□ -0.24
HPS4-202ENST00000398145 C9orf84Q5VXU9 1444 aa13.52□□□□□ -0.24
HPS4-202ENST00000398145 PRDM2Q13029 1718 aa13.52□□□□□ -0.25
HPS4-202ENST00000398145 RRP9O43818 475 aaKnown RBP13.52□□□□□ -0.25
HPS4-202ENST00000398145 CFAP70Q5T0N1 1121 aa13.52□□□□□ -0.25
HPS4-202ENST00000398145 WDR63Q8IWG1 891 aa13.52□□□□□ -0.25
HPS4-202ENST00000398145 CCDC39Q9UFE4 941 aa13.52□□□□□ -0.25
HPS4-202ENST00000398145 CIZ1Q9ULV3 898 aaPredicted RBP13.52□□□□□ -0.25
HPS4-202ENST00000398145 MLECQ14165 292 aa13.52□□□□□ -0.25
HPS4-202ENST00000398145 MVPQ14764 893 aaKnown RBP13.51□□□□□ -0.25
HPS4-202ENST00000398145 PKNOX2Q96KN3 472 aa13.51□□□□□ -0.25
HPS4-202ENST00000398145 GNL2Q13823 731 aaKnown RBP13.51□□□□□ -0.25
HPS4-202ENST00000398145 RNF214Q8ND24 703 aa13.51□□□□□ -0.25
HPS4-202ENST00000398145 MINK1Q8N4C8 1332 aaPredicted RBP13.51□□□□□ -0.25
HPS4-202ENST00000398145 MBD3O95983 291 aa13.51□□□□□ -0.25
HPS4-202ENST00000398145 RABEP1Q15276 862 aa13.51□□□□□ -0.25
HPS4-202ENST00000398145 TROQ12816 1431 aaPredicted RBP13.5□□□□□ -0.25
HPS4-202ENST00000398145 GOLGA6L19H0YKK7 550 aa13.5□□□□□ -0.25
HPS4-202ENST00000398145 CT47B1P0C2W7 299 aaPredicted RBP13.5□□□□□ -0.25
HPS4-202ENST00000398145 SCAPERQ9BY12 1400 aa13.5□□□□□ -0.25
HPS4-202ENST00000398145 GCC1Q96CN9 775 aa13.5□□□□□ -0.25
HPS4-202ENST00000398145 GGNBP2Q9H3C7 697 aa13.5□□□□□ -0.25
HPS4-202ENST00000398145 HSP90B1P14625 803 aaKnown RBP13.49□□□□□ -0.25
HPS4-202ENST00000398145 COG3Q96JB2 828 aa13.49□□□□□ -0.25
HPS4-202ENST00000398145 KIF3AQ9Y496 699 aa13.49□□□□□ -0.25
HPS4-202ENST00000398145 POLA1P09884 1462 aaPredicted RBP13.49□□□□□ -0.25
HPS4-202ENST00000398145 PLEKHH2Q8IVE3 1493 aa13.49□□□□□ -0.25
HPS4-202ENST00000398145 PTPN23Q9H3S7 1636 aa13.49□□□□□ -0.25
HPS4-202ENST00000398145 TNNT3P45378 269 aaPredicted RBP13.49□□□□□ -0.25
HPS4-202ENST00000398145 PRG4Q92954 1404 aaPredicted RBP13.49□□□□□ -0.25
HPS4-202ENST00000398145 ATF7IPQ6VMQ6 1270 aa13.49□□□□□ -0.25
HPS4-202ENST00000398145 WWC1Q8IX03 1113 aa13.49□□□□□ -0.25
HPS4-202ENST00000398145 TSR2Q969E8 191 aaKnown RBP13.49□□□□□ -0.25
HPS4-202ENST00000398145 PRPF40AO75400 957 aaKnown RBP13.48□□□□□ -0.25
HPS4-202ENST00000398145 HECW1Q76N89 1606 aa13.48□□□□□ -0.25
HPS4-202ENST00000398145 A0A0G2JS52 829 aa13.48□□□□□ -0.25
HPS4-202ENST00000398145 BECN2A8MW95 431 aa13.48□□□□□ -0.25
HPS4-202ENST00000398145 K7ELQ4 463 aaPredicted RBP13.48□□□□□ -0.25
HPS4-202ENST00000398145 EPRSP07814 1512 aaKnown RBP13.48□□□□□ -0.25
HPS4-202ENST00000398145 DUSP27Q5VZP5 1158 aa13.48□□□□□ -0.25
HPS4-202ENST00000398145 HMGXB3Q12766 1538 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms