RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 UQCRHLA0A096LP55 91 aa14.4□□□□□ -0.1
SYNPO-202ENST00000394243 ELL2O00472 640 aaPredicted RBP14.4□□□□□ -0.1
SYNPO-202ENST00000394243 UQCRHP07919 91 aa14.4□□□□□ -0.1
SYNPO-202ENST00000394243 FBXO3Q9UK99 471 aa14.4□□□□□ -0.1
SYNPO-202ENST00000394243 PLCD4Q9BRC7 762 aa14.4□□□□□ -0.1
SYNPO-202ENST00000394243 CHMP4AQ9BY43 222 aa14.4□□□□□ -0.1
SYNPO-202ENST00000394243 ANO2Q9NQ90 1003 aa14.4□□□□□ -0.1
SYNPO-202ENST00000394243 CCDC9Q9Y3X0 531 aaKnown RBP14.4□□□□□ -0.1
SYNPO-202ENST00000394243 SKIDA1Q1XH10 827 aa14.4□□□□□ -0.1
SYNPO-202ENST00000394243 SMC3Q9UQE7 1217 aa14.4□□□□□ -0.1
SYNPO-202ENST00000394243 WWC1Q8IX03 1113 aa14.38□□□□□ -0.11
SYNPO-202ENST00000394243 VPS53Q5VIR6 699 aa14.38□□□□□ -0.11
SYNPO-202ENST00000394243 AKAP17AQ02040 695 aaKnown RBP14.38□□□□□ -0.11
SYNPO-202ENST00000394243 LMOD3Q0VAK6 560 aa14.38□□□□□ -0.11
SYNPO-202ENST00000394243 TSPYL1Q9H0U9 437 aa14.38□□□□□ -0.11
SYNPO-202ENST00000394243 ZKSCAN1P17029 563 aaPredicted RBP14.37□□□□□ -0.11
SYNPO-202ENST00000394243 ERCC4Q92889 916 aaPredicted RBP14.37□□□□□ -0.11
SYNPO-202ENST00000394243 HOOK1Q9UJC3 728 aaKnown RBP14.37□□□□□ -0.11
SYNPO-202ENST00000394243 NAP1L1P55209 391 aaKnown RBP14.37□□□□□ -0.11
SYNPO-202ENST00000394243 DCTN1Q14203 1278 aa14.37□□□□□ -0.11
SYNPO-202ENST00000394243 SOGA1O94964 1423 aa14.37□□□□□ -0.11
SYNPO-202ENST00000394243 TRIM5Q9C035 493 aa14.37□□□□□ -0.11
SYNPO-202ENST00000394243 DDX19BQ9UMR2 479 aa14.36□□□□□ -0.11
SYNPO-202ENST00000394243 PDILTQ8N807 584 aa14.36□□□□□ -0.11
SYNPO-202ENST00000394243 TSPY26PQ9H489 355 aa14.36□□□□□ -0.11
SYNPO-202ENST00000394243 PANK3Q9H999 370 aa14.36□□□□□ -0.11
SYNPO-202ENST00000394243 RUFY2Q8WXA3 655 aa14.36□□□□□ -0.11
SYNPO-202ENST00000394243 EIF3AQ14152 1382 aaKnown RBP14.36□□□□□ -0.11
SYNPO-202ENST00000394243 TRIM29Q14134 588 aa14.35□□□□□ -0.11
SYNPO-202ENST00000394243 CCDC73Q6ZRK6 1079 aa14.35□□□□□ -0.11
SYNPO-202ENST00000394243 INTS3Q68E01 1043 aaKnown RBP14.35□□□□□ -0.11
SYNPO-202ENST00000394243 FOSBP53539 338 aa14.35□□□□□ -0.11
SYNPO-202ENST00000394243 TTLL5Q6EMB2 1281 aa14.35□□□□□ -0.11
SYNPO-202ENST00000394243 SPC24Q8NBT2 197 aa14.35□□□□□ -0.11
SYNPO-202ENST00000394243 CAGE1Q8TC20 777 aa14.34□□□□□ -0.11
SYNPO-202ENST00000394243 GRPEL1Q9HAV7 217 aa14.34□□□□□ -0.11
SYNPO-202ENST00000394243 NUP155O75694 1391 aa14.34□□□□□ -0.11
SYNPO-202ENST00000394243 LNPKQ9C0E8 428 aa14.34□□□□□ -0.11
SYNPO-202ENST00000394243 FMN1Q68DA7 1419 aa14.34□□□□□ -0.11
SYNPO-202ENST00000394243 ERICH4A6NGS2 130 aa14.34□□□□□ -0.11
SYNPO-202ENST00000394243 PRPF40AO75400 957 aaKnown RBP14.33□□□□□ -0.11
SYNPO-202ENST00000394243 CPLX2Q6PUV4 134 aaKnown RBP14.33□□□□□ -0.11
SYNPO-202ENST00000394243 NAT10Q9H0A0 1025 aaKnown RBP14.33□□□□□ -0.12
SYNPO-202ENST00000394243 APAF1O14727 1248 aa14.33□□□□□ -0.12
SYNPO-202ENST00000394243 AXDND1Q5T1B0 1012 aaPredicted RBP14.33□□□□□ -0.12
SYNPO-202ENST00000394243 DZIP1LQ8IYY4 767 aaKnown RBP14.33□□□□□ -0.12
SYNPO-202ENST00000394243 SYNE3Q6ZMZ3 975 aa14.33□□□□□ -0.12
SYNPO-202ENST00000394243 LETM1O95202 739 aaPredicted RBP14.32□□□□□ -0.12
SYNPO-202ENST00000394243 MPNDQ8N594 471 aa14.32□□□□□ -0.12
SYNPO-202ENST00000394243 PRDM10Q9NQV6 1147 aa14.32□□□□□ -0.12
SYNPO-202ENST00000394243 DHX57Q6P158 1386 aaKnown RBP14.32□□□□□ -0.12
SYNPO-202ENST00000394243 ST20-MTHFSA0A0A6YYL1 179 aa14.32□□□□□ -0.12
SYNPO-202ENST00000394243 ESPNB1AK53 854 aa14.32□□□□□ -0.12
SYNPO-202ENST00000394243 CPLX1O14810 134 aa14.32□□□□□ -0.12
SYNPO-202ENST00000394243 CCDC47Q96A33 483 aaKnown RBP14.31□□□□□ -0.12
SYNPO-202ENST00000394243 MBD3O95983 291 aa14.31□□□□□ -0.12
SYNPO-202ENST00000394243 TAF3Q5VWG9 929 aa14.31□□□□□ -0.12
SYNPO-202ENST00000394243 TERF2IPQ9NYB0 399 aa14.31□□□□□ -0.12
SYNPO-202ENST00000394243 CCDC27Q2M243 656 aa14.3□□□□□ -0.12
SYNPO-202ENST00000394243 OLFM4Q6UX06 510 aa14.29□□□□□ -0.12
SYNPO-202ENST00000394243 DEF6Q9H4E7 631 aa14.29□□□□□ -0.12
SYNPO-202ENST00000394243 SMC2O95347 1197 aa14.29□□□□□ -0.12
SYNPO-202ENST00000394243 CCDC112Q8NEF3 446 aa14.29□□□□□ -0.12
SYNPO-202ENST00000394243 SDF4Q9BRK5 362 aa14.29□□□□□ -0.12
SYNPO-202ENST00000394243 KIAA0754O94854 1291 aa14.29□□□□□ -0.12
SYNPO-202ENST00000394243 RNF20Q5VTR2 975 aa14.29□□□□□ -0.12
SYNPO-202ENST00000394243 CT47B1P0C2W7 299 aaPredicted RBP14.28□□□□□ -0.12
SYNPO-202ENST00000394243 HDGFP51858 240 aaKnown RBP14.28□□□□□ -0.12
SYNPO-202ENST00000394243 DHX37Q8IY37 1157 aaKnown RBP14.28□□□□□ -0.12
SYNPO-202ENST00000394243 RB1CC1Q8TDY2 1594 aa14.27□□□□□ -0.12
SYNPO-202ENST00000394243 CSB-PGBD3P0DP91 1061 aa14.27□□□□□ -0.12
SYNPO-202ENST00000394243 PANK1Q8TE04 598 aa14.27□□□□□ -0.12
SYNPO-202ENST00000394243 EIF4G1Q04637 1599 aaKnown RBP14.27□□□□□ -0.13
SYNPO-202ENST00000394243 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.27□□□□□ -0.13
SYNPO-202ENST00000394243 CCP110O43303 1012 aa14.27□□□□□ -0.13
SYNPO-202ENST00000394243 AEBP1Q8IUX7 1158 aa14.26□□□□□ -0.13
SYNPO-202ENST00000394243 UBE2Q2Q8WVN8 375 aa14.26□□□□□ -0.13
SYNPO-202ENST00000394243 CBX1P83916 185 aa14.26□□□□□ -0.13
SYNPO-202ENST00000394243 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.26□□□□□ -0.13
SYNPO-202ENST00000394243 CDC45O75419 566 aa14.25□□□□□ -0.13
SYNPO-202ENST00000394243 IFIT2P09913 472 aaKnown RBP14.25□□□□□ -0.13
SYNPO-202ENST00000394243 PDCL2Q8N4E4 241 aa14.25□□□□□ -0.13
SYNPO-202ENST00000394243 FMNL2Q96PY5 1086 aa14.25□□□□□ -0.13
SYNPO-202ENST00000394243 GGT6Q6P531 493 aa14.24□□□□□ -0.13
SYNPO-202ENST00000394243 USP8P40818 1118 aa14.24□□□□□ -0.13
SYNPO-202ENST00000394243 CARMIL1Q5VZK9 1371 aa14.24□□□□□ -0.13
SYNPO-202ENST00000394243 BACH2Q9BYV9 841 aa14.23□□□□□ -0.13
SYNPO-202ENST00000394243 ZMYND15Q9H091 742 aa14.23□□□□□ -0.13
SYNPO-202ENST00000394243 LRRFIP1Q32MZ4 808 aaKnown RBP14.22□□□□□ -0.13
SYNPO-202ENST00000394243 LTV1Q96GA3 475 aaPredicted RBP14.22□□□□□ -0.13
SYNPO-202ENST00000394243 NFXL1Q6ZNB6 911 aa14.22□□□□□ -0.13
SYNPO-202ENST00000394243 FIBPO43427 364 aa14.22□□□□□ -0.13
SYNPO-202ENST00000394243 AMPHP49418 695 aa14.22□□□□□ -0.13
SYNPO-202ENST00000394243 KINO60870 393 aaKnown RBP14.22□□□□□ -0.13
SYNPO-202ENST00000394243 MLECQ14165 292 aa14.22□□□□□ -0.13
SYNPO-202ENST00000394243 CENPHQ9H3R5 247 aa14.22□□□□□ -0.13
SYNPO-202ENST00000394243 TRDNQ13061 729 aa14.21□□□□□ -0.13
SYNPO-202ENST00000394243 HSP90AB2PQ58FF8 381 aa14.21□□□□□ -0.13
SYNPO-202ENST00000394243 CT47A1Q5JQC4 288 aaPredicted RBP14.21□□□□□ -0.13
SYNPO-202ENST00000394243 API5Q9BZZ5 524 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms