RNA–Protein interactions for RNA: ENST00000377865.6

PCDH9-202, Transcript of protocadherin 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PCDH9, Length 5,709 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-202ENST00000377865 KIF21AQ7Z4S6 1674 aa10.89□□□□□ -0.67
PCDH9-202ENST00000377865 DDX49Q9Y6V7 483 aaKnown RBP10.89□□□□□ -0.67
PCDH9-202ENST00000377865 EVC2Q86UK5 1308 aa10.88□□□□□ -0.67
PCDH9-202ENST00000377865 RRP7AQ9Y3A4 280 aaKnown RBP10.88□□□□□ -0.67
PCDH9-202ENST00000377865 FRAT2O75474 233 aaPredicted RBP10.88□□□□□ -0.67
PCDH9-202ENST00000377865 KIF16BQ96L93 1317 aa10.88□□□□□ -0.67
PCDH9-202ENST00000377865 C11orf95C9JLR9 678 aaPredicted RBP10.88□□□□□ -0.67
PCDH9-202ENST00000377865 KIF3BO15066 747 aa10.88□□□□□ -0.67
PCDH9-202ENST00000377865 OS9Q13438 667 aaPredicted RBP10.88□□□□□ -0.67
PCDH9-202ENST00000377865 SYNJ2O15056 1496 aa10.87□□□□□ -0.67
PCDH9-202ENST00000377865 IFT140Q96RY7 1462 aa10.87□□□□□ -0.67
PCDH9-202ENST00000377865 TPM2P07951 284 aa10.87□□□□□ -0.67
PCDH9-202ENST00000377865 ARHGAP5Q13017 1502 aa10.87□□□□□ -0.67
PCDH9-202ENST00000377865 LAMC3Q9Y6N6 1575 aa10.87□□□□□ -0.67
PCDH9-202ENST00000377865 KIAA1211Q6ZU35 1233 aa10.87□□□□□ -0.67
PCDH9-202ENST00000377865 HTATSF1O43719 755 aaKnown RBP10.86□□□□□ -0.67
PCDH9-202ENST00000377865 KCNJ4P48050 445 aa10.86□□□□□ -0.67
PCDH9-202ENST00000377865 TPRNQ4KMQ1 711 aa10.86□□□□□ -0.67
PCDH9-202ENST00000377865 DRC7Q8IY82 874 aa10.86□□□□□ -0.67
PCDH9-202ENST00000377865 RTF1Q92541 710 aaKnown RBP10.86□□□□□ -0.67
PCDH9-202ENST00000377865 ANO8Q9HCE9 1232 aaPredicted RBP10.86□□□□□ -0.67
PCDH9-202ENST00000377865 RALGAPBQ86X10 1494 aa10.86□□□□□ -0.67
PCDH9-202ENST00000377865 HDGFP51858 240 aaKnown RBP10.86□□□□□ -0.67
PCDH9-202ENST00000377865 NUCB2P80303 420 aa10.86□□□□□ -0.67
PCDH9-202ENST00000377865 FOXD4L1Q9NU39 408 aa10.86□□□□□ -0.67
PCDH9-202ENST00000377865 MRC2Q9UBG0 1479 aa10.86□□□□□ -0.67
PCDH9-202ENST00000377865 ANKRD45Q5TZF3 282 aa10.85□□□□□ -0.67
PCDH9-202ENST00000377865 ITSN2Q9NZM3 1697 aa10.85□□□□□ -0.67
PCDH9-202ENST00000377865 PANK1Q8TE04 598 aa10.85□□□□□ -0.67
PCDH9-202ENST00000377865 BCL2L13Q9BXK5 485 aa10.85□□□□□ -0.67
PCDH9-202ENST00000377865 TRAK2O60296 914 aa10.85□□□□□ -0.67
PCDH9-202ENST00000377865 CT47B1P0C2W7 299 aaPredicted RBP10.85□□□□□ -0.67
PCDH9-202ENST00000377865 CHMP4AQ9BY43 222 aa10.85□□□□□ -0.67
PCDH9-202ENST00000377865 KIF14Q15058 1648 aa10.84□□□□□ -0.67
PCDH9-202ENST00000377865 CCDC141Q6ZP82 1450 aa10.84□□□□□ -0.67
PCDH9-202ENST00000377865 PRG4Q92954 1404 aaPredicted RBP10.84□□□□□ -0.67
PCDH9-202ENST00000377865 CDK11BP21127 795 aaKnown RBP10.84□□□□□ -0.67
PCDH9-202ENST00000377865 VSIG10Q8N0Z9 540 aa10.84□□□□□ -0.67
PCDH9-202ENST00000377865 KIAA0586Q9BVV6 1533 aa10.84□□□□□ -0.67
PCDH9-202ENST00000377865 PTPRKQ15262 1439 aa10.84□□□□□ -0.67
PCDH9-202ENST00000377865 SAFB2Q14151 953 aaKnown RBP eCLIP10.83□□□□□ -0.67
PCDH9-202ENST00000377865 MAP7D2Q96T17 732 aa10.83□□□□□ -0.67
PCDH9-202ENST00000377865 SENP3Q9H4L4 574 aaPredicted RBP10.83□□□□□ -0.68
PCDH9-202ENST00000377865 PDZRN3Q9UPQ7 1066 aa10.83□□□□□ -0.68
PCDH9-202ENST00000377865 REC8O95072 547 aa10.83□□□□□ -0.68
PCDH9-202ENST00000377865 MTERF4Q7Z6M4 381 aaKnown RBP10.83□□□□□ -0.68
PCDH9-202ENST00000377865 STK26Q9P289 416 aa10.83□□□□□ -0.68
PCDH9-202ENST00000377865 TRAK1Q9UPV9 953 aa10.83□□□□□ -0.68
PCDH9-202ENST00000377865 NKTRP30414 1462 aaKnown RBP10.82□□□□□ -0.68
PCDH9-202ENST00000377865 SLFN5Q08AF3 891 aa10.82□□□□□ -0.68
PCDH9-202ENST00000377865 CCDC173Q0VFZ6 552 aa10.82□□□□□ -0.68
PCDH9-202ENST00000377865 API5Q9BZZ5 524 aaKnown RBP10.82□□□□□ -0.68
PCDH9-202ENST00000377865 WDR63Q8IWG1 891 aa10.82□□□□□ -0.68
PCDH9-202ENST00000377865 SNAPC4Q5SXM2 1469 aa10.82□□□□□ -0.68
PCDH9-202ENST00000377865 GGT6Q6P531 493 aa10.82□□□□□ -0.68
PCDH9-202ENST00000377865 GCC2Q8IWJ2 1684 aa10.81□□□□□ -0.68
PCDH9-202ENST00000377865 APBB1O00213 710 aa10.81□□□□□ -0.68
PCDH9-202ENST00000377865 STK31Q9BXU1 1019 aa10.81□□□□□ -0.68
PCDH9-202ENST00000377865 ATP6V1DQ9Y5K8 247 aa10.81□□□□□ -0.68
PCDH9-202ENST00000377865 INTS3Q68E01 1043 aaKnown RBP10.81□□□□□ -0.68
PCDH9-202ENST00000377865 CDC45O75419 566 aa10.8□□□□□ -0.68
PCDH9-202ENST00000377865 FGD1P98174 961 aa10.8□□□□□ -0.68
PCDH9-202ENST00000377865 GPATCH3Q96I76 525 aa10.8□□□□□ -0.68
PCDH9-202ENST00000377865 VGFO15240 615 aaPredicted RBP10.8□□□□□ -0.68
PCDH9-202ENST00000377865 CIZ1Q9ULV3 898 aaPredicted RBP10.8□□□□□ -0.68
PCDH9-202ENST00000377865 NBPF1Q3BBV0 1214 aa10.8□□□□□ -0.68
PCDH9-202ENST00000377865 CCDC39Q9UFE4 941 aa10.79□□□□□ -0.68
PCDH9-202ENST00000377865 DIAPH1O60610 1272 aaKnown RBP10.79□□□□□ -0.68
PCDH9-202ENST00000377865 NASPP49321 788 aaPredicted RBP10.79□□□□□ -0.68
PCDH9-202ENST00000377865 HDAC5Q9UQL6 1122 aa10.79□□□□□ -0.68
PCDH9-202ENST00000377865 TRIM6-TRIM34B2RNG4 842 aa10.79□□□□□ -0.68
PCDH9-202ENST00000377865 C14orf37Q86TY3 774 aa10.79□□□□□ -0.68
PCDH9-202ENST00000377865 BCAR3O75815 825 aa10.78□□□□□ -0.68
PCDH9-202ENST00000377865 EIF2AK4Q9P2K8 1649 aaKnown RBP10.78□□□□□ -0.68
PCDH9-202ENST00000377865 RIPK4P57078 832 aa10.78□□□□□ -0.68
PCDH9-202ENST00000377865 LRPPRCP42704 1394 aaKnown RBP10.78□□□□□ -0.68
PCDH9-202ENST00000377865 ARHGEF12Q9NZN5 1544 aa10.78□□□□□ -0.68
PCDH9-202ENST00000377865 GCC1Q96CN9 775 aa10.78□□□□□ -0.68
PCDH9-202ENST00000377865 PRKCSHP14314 528 aaPredicted RBP10.77□□□□□ -0.68
PCDH9-202ENST00000377865 TCP11L2Q8N4U5 519 aa10.77□□□□□ -0.68
PCDH9-202ENST00000377865 GRPEL1Q9HAV7 217 aa10.77□□□□□ -0.69
PCDH9-202ENST00000377865 TPM4P67936 248 aa10.77□□□□□ -0.69
PCDH9-202ENST00000377865 MCM4P33991 863 aa10.77□□□□□ -0.69
PCDH9-202ENST00000377865 GNAI1P63096 354 aa10.77□□□□□ -0.69
PCDH9-202ENST00000377865 MVPQ14764 893 aaKnown RBP10.77□□□□□ -0.69
PCDH9-202ENST00000377865 RAPGEF6Q8TEU7 1601 aa10.76□□□□□ -0.69
PCDH9-202ENST00000377865 RRP9O43818 475 aaKnown RBP10.76□□□□□ -0.69
PCDH9-202ENST00000377865 MAGI1Q96QZ7 1491 aaPredicted RBP10.76□□□□□ -0.69
PCDH9-202ENST00000377865 MCTP1Q6DN14 999 aa10.76□□□□□ -0.69
PCDH9-202ENST00000377865 DNMT1P26358 1616 aaKnown RBP10.76□□□□□ -0.69
PCDH9-202ENST00000377865 ZBTB7CA1YPR0 619 aa10.75□□□□□ -0.69
PCDH9-202ENST00000377865 RABEP1Q15276 862 aa10.75□□□□□ -0.69
PCDH9-202ENST00000377865 PARD3Q8TEW0 1356 aa10.75□□□□□ -0.69
PCDH9-202ENST00000377865 LNPKQ9C0E8 428 aa10.75□□□□□ -0.69
PCDH9-202ENST00000377865 INSRP06213 1382 aa10.74□□□□□ -0.69
PCDH9-202ENST00000377865 NUP160Q12769 1436 aa10.74□□□□□ -0.69
PCDH9-202ENST00000377865 MBD3O95983 291 aa10.74□□□□□ -0.69
PCDH9-202ENST00000377865 CWC22Q9HCG8 908 aaKnown RBP10.74□□□□□ -0.69
PCDH9-202ENST00000377865 RNF123Q5XPI4 1314 aa10.74□□□□□ -0.69
PCDH9-202ENST00000377865 TPM3P06753 285 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms