RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 NLRP13Q86W25 1043 aa15.19■□□□□ 0.02
VPS13A-204ENST00000376634 C9orf78Q9NZ63 289 aaPredicted RBP15.19■□□□□ 0.02
VPS13A-204ENST00000376634 ZKSCAN1P17029 563 aaPredicted RBP15.19■□□□□ 0.02
VPS13A-204ENST00000376634 DHX16O60231 1041 aaKnown RBP15.18■□□□□ 0.02
VPS13A-204ENST00000376634 CENPQQ7L2Z9 268 aaPredicted RBP15.18■□□□□ 0.02
VPS13A-204ENST00000376634 ANKRD45Q5TZF3 282 aa15.18■□□□□ 0.02
VPS13A-204ENST00000376634 ACBD3Q9H3P7 528 aa15.18■□□□□ 0.02
VPS13A-204ENST00000376634 RAB3GAP2Q9H2M9 1393 aa15.18■□□□□ 0.02
VPS13A-204ENST00000376634 TTC5Q8N0Z6 440 aa15.17■□□□□ 0.02
VPS13A-204ENST00000376634 ANO2Q9NQ90 1003 aa15.17■□□□□ 0.02
VPS13A-204ENST00000376634 TRDNQ13061 729 aa15.17■□□□□ 0.02
VPS13A-204ENST00000376634 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.16■□□□□ 0.02
VPS13A-204ENST00000376634 EVA1CP58658 441 aa15.16■□□□□ 0.02
VPS13A-204ENST00000376634 WIZO95785 1651 aa15.16■□□□□ 0.02
VPS13A-204ENST00000376634 NFXL1Q6ZNB6 911 aa15.16■□□□□ 0.02
VPS13A-204ENST00000376634 CCDC191Q8NCU4 936 aa15.16■□□□□ 0.02
VPS13A-204ENST00000376634 ERICH2A1L162 156 aa15.15■□□□□ 0.02
VPS13A-204ENST00000376634 RNF20Q5VTR2 975 aa15.15■□□□□ 0.02
VPS13A-204ENST00000376634 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.15■□□□□ 0.02
VPS13A-204ENST00000376634 MYO6Q9UM54 1294 aa15.15■□□□□ 0.02
VPS13A-204ENST00000376634 MSH5O43196 834 aa15.15■□□□□ 0.02
VPS13A-204ENST00000376634 CCDC144AA2RUR9 1427 aa15.15■□□□□ 0.02
VPS13A-204ENST00000376634 DCTN1Q14203 1278 aa15.14■□□□□ 0.02
VPS13A-204ENST00000376634 FBXW7Q969H0 707 aa15.14■□□□□ 0.02
VPS13A-204ENST00000376634 BICD2Q8TD16 824 aa15.14■□□□□ 0.01
VPS13A-204ENST00000376634 CWC15Q9P013 229 aaKnown RBP15.14■□□□□ 0.01
VPS13A-204ENST00000376634 FAM161AQ3B820 660 aa15.14■□□□□ 0.01
VPS13A-204ENST00000376634 ARGLU1Q9NWB6 273 aaPredicted RBP15.14■□□□□ 0.01
VPS13A-204ENST00000376634 MPHOSPH9Q99550 1183 aa15.14■□□□□ 0.01
VPS13A-204ENST00000376634 HSP90B2PQ58FF3 399 aa15.13■□□□□ 0.01
VPS13A-204ENST00000376634 NAT10Q9H0A0 1025 aaKnown RBP15.13■□□□□ 0.01
VPS13A-204ENST00000376634 CCDC173Q0VFZ6 552 aa15.13■□□□□ 0.01
VPS13A-204ENST00000376634 WASHC2CQ9Y4E1 1318 aa15.13■□□□□ 0.01
VPS13A-204ENST00000376634 CFAP65Q6ZU64 1925 aaKnown RBP15.12■□□□□ 0.01
VPS13A-204ENST00000376634 SAFBQ15424 915 aaKnown RBP eCLIP15.12■□□□□ 0.01
VPS13A-204ENST00000376634 HSP90AB2PQ58FF8 381 aa15.12■□□□□ 0.01
VPS13A-204ENST00000376634 IFIT2P09913 472 aaKnown RBP15.12■□□□□ 0.01
VPS13A-204ENST00000376634 COG3Q96JB2 828 aa15.12■□□□□ 0.01
VPS13A-204ENST00000376634 FAM13BQ9NYF5 915 aa15.12■□□□□ 0.01
VPS13A-204ENST00000376634 R3HCC1Q9Y3T6 440 aaKnown RBP15.12■□□□□ 0.01
VPS13A-204ENST00000376634 RRP7AQ9Y3A4 280 aaKnown RBP15.11■□□□□ 0.01
VPS13A-204ENST00000376634 MYBBP1AQ9BQG0 1328 aaKnown RBP15.11■□□□□ 0.01
VPS13A-204ENST00000376634 CAGE1Q8TC20 777 aa15.11■□□□□ 0.01
VPS13A-204ENST00000376634 GSE1Q14687 1217 aa15.11■□□□□ 0.01
VPS13A-204ENST00000376634 BRMS1Q9HCU9 246 aa15.11■□□□□ 0.01
VPS13A-204ENST00000376634 TEFQ10587 303 aa15.1■□□□□ 0.01
VPS13A-204ENST00000376634 EFCAB2Q5VUJ9 269 aa15.1■□□□□ 0.01
VPS13A-204ENST00000376634 SASS6Q6UVJ0 657 aa15.1■□□□□ 0.01
VPS13A-204ENST00000376634 ZKSCAN2Q63HK3 967 aa15.1■□□□□ 0.01
VPS13A-204ENST00000376634 IFT57Q9NWB7 429 aa15.09■□□□□ 0.01
VPS13A-204ENST00000376634 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.08■□□□□ 0.01
VPS13A-204ENST00000376634 MEX3CQ5U5Q3 659 aaKnown RBP15.08■□□□□ 0.01
VPS13A-204ENST00000376634 H0YHG0 523 aa15.08■□□□□ 0
VPS13A-204ENST00000376634 ZFYVE27Q5T4F4 411 aa15.08■□□□□ 0
VPS13A-204ENST00000376634 NUTM2DQ5VT03 806 aaPredicted RBP15.08■□□□□ 0
VPS13A-204ENST00000376634 EVC2Q86UK5 1308 aa15.08■□□□□ 0
VPS13A-204ENST00000376634 E9PSI1 815 aa15.08■□□□□ 0
VPS13A-204ENST00000376634 MNS1Q8NEH6 495 aa15.08■□□□□ 0
VPS13A-204ENST00000376634 NINLQ9Y2I6 1382 aa15.08■□□□□ 0
VPS13A-204ENST00000376634 OLFM4Q6UX06 510 aa15.08■□□□□ 0
VPS13A-204ENST00000376634 CCDC73Q6ZRK6 1079 aa15.07■□□□□ 0
VPS13A-204ENST00000376634 DDX58O95786 925 aaKnown RBP15.07■□□□□ 0
VPS13A-204ENST00000376634 ZRSR2Q15696 482 aaKnown RBP15.07■□□□□ 0
VPS13A-204ENST00000376634 OFD1O75665 1012 aa15.06■□□□□ 0
VPS13A-204ENST00000376634 KIF3BO15066 747 aa15.06■□□□□ 0
VPS13A-204ENST00000376634 NUTM2FA1L443 756 aa15.06■□□□□ 0
VPS13A-204ENST00000376634 NGEFQ8N5V2 710 aa15.06■□□□□ 0
VPS13A-204ENST00000376634 SYTL4Q96C24 671 aaPredicted RBP15.06■□□□□ 0
VPS13A-204ENST00000376634 VPS37CA5D8V6 355 aaPredicted RBP15.05■□□□□ 0
VPS13A-204ENST00000376634 RBM33Q96EV2 1170 aaKnown RBP15.05■□□□□ -0
VPS13A-204ENST00000376634 G3BP1Q13283 466 aaKnown RBP eCLIP15.05■□□□□ -0
VPS13A-204ENST00000376634 DDX19BQ9UMR2 479 aa15.04■□□□□ -0
VPS13A-204ENST00000376634 MTERF4Q7Z6M4 381 aaKnown RBP15.04■□□□□ -0
VPS13A-204ENST00000376634 RALYLQ86SE5 291 aaKnown RBP15.04■□□□□ -0
VPS13A-204ENST00000376634 FOSBP53539 338 aa15.04■□□□□ -0
VPS13A-204ENST00000376634 ERC2O15083 957 aa15.04■□□□□ -0
VPS13A-204ENST00000376634 BCL2L13Q9BXK5 485 aa15.04■□□□□ -0
VPS13A-204ENST00000376634 SOGA1O94964 1423 aa15.04■□□□□ -0
VPS13A-204ENST00000376634 SMC3Q9UQE7 1217 aa15.03■□□□□ -0
VPS13A-204ENST00000376634 PDS5BQ9NTI5 1447 aa15.03■□□□□ -0
VPS13A-204ENST00000376634 XBP1P17861 261 aa15.03■□□□□ -0
VPS13A-204ENST00000376634 EIF2S2P20042 333 aaKnown RBP15.02■□□□□ -0
VPS13A-204ENST00000376634 SAMD1Q6SPF0 538 aaPredicted RBP15.02□□□□□ -0.01
VPS13A-204ENST00000376634 WWC2Q6AWC2 1192 aa15.02□□□□□ -0.01
VPS13A-204ENST00000376634 INTS3Q68E01 1043 aaKnown RBP15.01□□□□□ -0.01
VPS13A-204ENST00000376634 PDILTQ8N807 584 aa15.01□□□□□ -0.01
VPS13A-204ENST00000376634 WASHC2AQ641Q2 1341 aa15.01□□□□□ -0.01
VPS13A-204ENST00000376634 SETD1BQ9UPS6 1966 aaKnown RBP15.01□□□□□ -0.01
VPS13A-204ENST00000376634 TMEM132AQ24JP5 1023 aa15.01□□□□□ -0.01
VPS13A-204ENST00000376634 FAM43AQ8N2R8 423 aa15.01□□□□□ -0.01
VPS13A-204ENST00000376634 PAF1Q8N7H5 531 aa15.01□□□□□ -0.01
VPS13A-204ENST00000376634 ZBED9Q6R2W3 1325 aa15.01□□□□□ -0.01
VPS13A-204ENST00000376634 CUX1P39880 1505 aa15.01□□□□□ -0.01
VPS13A-204ENST00000376634 CCDC66A2RUB6 948 aa15□□□□□ -0.01
VPS13A-204ENST00000376634 RRP1P56182 461 aaKnown RBP15□□□□□ -0.01
VPS13A-204ENST00000376634 USP47Q96K76 1375 aa15□□□□□ -0.01
VPS13A-204ENST00000376634 ERCC4Q92889 916 aaPredicted RBP15□□□□□ -0.01
VPS13A-204ENST00000376634 PDE4AP27815 886 aa15□□□□□ -0.01
VPS13A-204ENST00000376634 TRAK1Q9UPV9 953 aa15□□□□□ -0.01
VPS13A-204ENST00000376634 MIA2Q96PC5 1412 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms