RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ZNF521Q96K83 1311 aa27.62■■■□□ 2.01
UPF3A-202ENST00000375299 WDR43Q15061 677 aaKnown RBP eCLIP27.61■■■□□ 2.01
UPF3A-202ENST00000375299 PPP2R1AP30153 589 aa27.6■■■□□ 2.01
UPF3A-202ENST00000375299 C8orf34Q49A92 452 aa27.6■■■□□ 2.01
UPF3A-202ENST00000375299 DAXXQ9UER7 740 aaPredicted RBP27.6■■■□□ 2.01
UPF3A-202ENST00000375299 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.6■■■□□ 2.01
UPF3A-202ENST00000375299 PLCH2O75038 1416 aa27.6■■■□□ 2.01
UPF3A-202ENST00000375299 SLC4A3P48751 1232 aa27.59■■■□□ 2.01
UPF3A-202ENST00000375299 IQGAP1P46940 1657 aa27.58■■■□□ 2.01
UPF3A-202ENST00000375299 GOLGA2Q08379 1002 aa27.58■■■□□ 2.01
UPF3A-202ENST00000375299 ZCCHC11Q5TAX3 1644 aaKnown RBP27.56■■■□□ 2
UPF3A-202ENST00000375299 SYNMO15061 1565 aa27.56■■■□□ 2
UPF3A-202ENST00000375299 KNSTRNQ9Y448 316 aa27.56■■■□□ 2
UPF3A-202ENST00000375299 MADDQ8WXG6 1647 aa27.53■■■□□ 2
UPF3A-202ENST00000375299 EFCAB2Q5VUJ9 269 aa27.53■■■□□ 2
UPF3A-202ENST00000375299 AMER1Q5JTC6 1135 aaPredicted RBP27.52■■■□□ 2
UPF3A-202ENST00000375299 ABCC1P33527 1531 aa27.52■■■□□ 2
UPF3A-202ENST00000375299 UHRF1BP1LA0JNW5 1464 aa27.51■■■□□ 2
UPF3A-202ENST00000375299 PIK3C2GO75747 1445 aa27.51■■□□□ 1.99
UPF3A-202ENST00000375299 SLFN5Q08AF3 891 aa27.51■■□□□ 1.99
UPF3A-202ENST00000375299 ASXL1Q8IXJ9 1541 aa27.5■■□□□ 1.99
UPF3A-202ENST00000375299 EIF3AQ14152 1382 aaKnown RBP27.5■■□□□ 1.99
UPF3A-202ENST00000375299 VIRMAQ69YN4 1812 aaKnown RBP27.5■■□□□ 1.99
UPF3A-202ENST00000375299 FRAT1Q92837 279 aaPredicted RBP27.49■■□□□ 1.99
UPF3A-202ENST00000375299 BRPF3Q9ULD4 1205 aa27.49■■□□□ 1.99
UPF3A-202ENST00000375299 TRAPPC8Q9Y2L5 1435 aa27.48■■□□□ 1.99
UPF3A-202ENST00000375299 PRKCSHP14314 528 aaPredicted RBP27.48■■□□□ 1.99
UPF3A-202ENST00000375299 TRMT2AQ8IZ69 625 aaKnown RBP27.46■■□□□ 1.99
UPF3A-202ENST00000375299 MYOM1P52179 1685 aa27.46■■□□□ 1.99
UPF3A-202ENST00000375299 RGS3P49796 1198 aa27.45■■□□□ 1.99
UPF3A-202ENST00000375299 CDCA8Q53HL2 280 aa27.45■■□□□ 1.98
UPF3A-202ENST00000375299 NKTRP30414 1462 aaKnown RBP27.44■■□□□ 1.98
UPF3A-202ENST00000375299 SPHKAPQ2M3C7 1700 aa27.44■■□□□ 1.98
UPF3A-202ENST00000375299 NPC1L1Q9UHC9 1359 aa27.43■■□□□ 1.98
UPF3A-202ENST00000375299 SCAF11Q99590 1463 aaKnown RBP27.42■■□□□ 1.98
UPF3A-202ENST00000375299 CCDC146Q8IYE0 955 aa27.38■■□□□ 1.97
UPF3A-202ENST00000375299 SCAPERQ9BY12 1400 aa27.38■■□□□ 1.97
UPF3A-202ENST00000375299 CEP152O94986 1710 aa27.38■■□□□ 1.97
UPF3A-202ENST00000375299 SPAG9O60271 1321 aaKnown RBP27.38■■□□□ 1.97
UPF3A-202ENST00000375299 RTEL1-TNFRSF6BF6WH68 1400 aa27.37■■□□□ 1.97
UPF3A-202ENST00000375299 FRAT2O75474 233 aaPredicted RBP27.37■■□□□ 1.97
UPF3A-202ENST00000375299 SPINK5Q9NQ38 1064 aaPredicted RBP27.37■■□□□ 1.97
UPF3A-202ENST00000375299 KDM5AP29375 1690 aaKnown RBP27.36■■□□□ 1.97
UPF3A-202ENST00000375299 ARAP3Q8WWN8 1544 aa27.36■■□□□ 1.97
UPF3A-202ENST00000375299 ZFYVE16Q7Z3T8 1539 aa27.36■■□□□ 1.97
UPF3A-202ENST00000375299 TRPM2O94759 1503 aa27.35■■□□□ 1.97
UPF3A-202ENST00000375299 APAF1O14727 1248 aa27.34■■□□□ 1.97
UPF3A-202ENST00000375299 BCAR3O75815 825 aa27.34■■□□□ 1.97
UPF3A-202ENST00000375299 AFAP1Q8N556 730 aa27.34■■□□□ 1.97
UPF3A-202ENST00000375299 E9PSI1 815 aa27.34■■□□□ 1.97
UPF3A-202ENST00000375299 STAC3Q96MF2 364 aa27.3■■□□□ 1.96
UPF3A-202ENST00000375299 DEPDC5O75140 1603 aa27.3■■□□□ 1.96
UPF3A-202ENST00000375299 PTPRTO14522 1441 aa27.3■■□□□ 1.96
UPF3A-202ENST00000375299 IGHDP01880 384 aa27.29■■□□□ 1.96
UPF3A-202ENST00000375299 USP19O94966 1318 aa27.29■■□□□ 1.96
UPF3A-202ENST00000375299 CGNL1Q0VF96 1302 aa27.29■■□□□ 1.96
UPF3A-202ENST00000375299 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.29■■□□□ 1.96
UPF3A-202ENST00000375299 KIAA1210Q9ULL0 1709 aa27.29■■□□□ 1.96
UPF3A-202ENST00000375299 NINLQ9Y2I6 1382 aa27.28■■□□□ 1.96
UPF3A-202ENST00000375299 CLTCL1P53675 1640 aa27.28■■□□□ 1.96
UPF3A-202ENST00000375299 NGEFQ8N5V2 710 aa27.28■■□□□ 1.96
UPF3A-202ENST00000375299 PDE3AQ14432 1141 aa27.27■■□□□ 1.96
UPF3A-202ENST00000375299 MAPK8IP3Q9UPT6 1336 aa27.26■■□□□ 1.95
UPF3A-202ENST00000375299 TET3O43151 1660 aa27.24■■□□□ 1.95
UPF3A-202ENST00000375299 DMRT2Q9Y5R5 561 aa27.23■■□□□ 1.95
UPF3A-202ENST00000375299 CLUAP1Q96AJ1 413 aa27.22■■□□□ 1.95
UPF3A-202ENST00000375299 INO80Q9ULG1 1556 aaPredicted RBP27.22■■□□□ 1.95
UPF3A-202ENST00000375299 ATP7AQ04656 1500 aa27.22■■□□□ 1.95
UPF3A-202ENST00000375299 ABCA9Q8IUA7 1624 aa27.22■■□□□ 1.95
UPF3A-202ENST00000375299 CENPJQ9HC77 1338 aaPredicted RBP27.21■■□□□ 1.95
UPF3A-202ENST00000375299 FANCAO15360 1455 aa27.21■■□□□ 1.95
UPF3A-202ENST00000375299 VWDEQ8N2E2 1590 aa27.21■■□□□ 1.95
UPF3A-202ENST00000375299 ERVK-7P63135 1459 aa27.19■■□□□ 1.94
UPF3A-202ENST00000375299 NLRP1Q9C000 1473 aa27.19■■□□□ 1.94
UPF3A-202ENST00000375299 BECN1Q14457 450 aa27.19■■□□□ 1.94
UPF3A-202ENST00000375299 KANK1Q14678 1352 aa27.18■■□□□ 1.94
UPF3A-202ENST00000375299 SEC24BO95487 1268 aa27.17■■□□□ 1.94
UPF3A-202ENST00000375299 CANXP27824 592 aaKnown RBP27.17■■□□□ 1.94
UPF3A-202ENST00000375299 COG6Q9Y2V7 657 aa27.16■■□□□ 1.94
UPF3A-202ENST00000375299 SLC24A1O60721 1099 aa27.15■■□□□ 1.94
UPF3A-202ENST00000375299 PANK1Q8TE04 598 aa27.15■■□□□ 1.94
UPF3A-202ENST00000375299 POLR3AO14802 1390 aaPredicted RBP27.15■■□□□ 1.94
UPF3A-202ENST00000375299 NEURL4Q96JN8 1562 aa27.14■■□□□ 1.94
UPF3A-202ENST00000375299 WWC1Q8IX03 1113 aa27.14■■□□□ 1.93
UPF3A-202ENST00000375299 FAM43AQ8N2R8 423 aa27.14■■□□□ 1.93
UPF3A-202ENST00000375299 KIF3BO15066 747 aa27.13■■□□□ 1.93
UPF3A-202ENST00000375299 CARD14Q9BXL6 1004 aa27.13■■□□□ 1.93
UPF3A-202ENST00000375299 ABCA6Q8N139 1617 aa27.12■■□□□ 1.93
UPF3A-202ENST00000375299 MAP3K4Q9Y6R4 1608 aa27.12■■□□□ 1.93
UPF3A-202ENST00000375299 ADGRL1O94910 1474 aa27.11■■□□□ 1.93
UPF3A-202ENST00000375299 SHPRHQ149N8 1683 aa27.11■■□□□ 1.93
UPF3A-202ENST00000375299 MROH1Q8NDA8 1641 aa27.1■■□□□ 1.93
UPF3A-202ENST00000375299 ZMYM3Q14202 1370 aa27.1■■□□□ 1.93
UPF3A-202ENST00000375299 PMFBP1Q8TBY8 1022 aa27.09■■□□□ 1.93
UPF3A-202ENST00000375299 POGKQ9P215 609 aa27.09■■□□□ 1.93
UPF3A-202ENST00000375299 AAMPQ13685 434 aa27.09■■□□□ 1.93
UPF3A-202ENST00000375299 MYOM2P54296 1465 aa27.09■■□□□ 1.93
UPF3A-202ENST00000375299 MYO3AQ8NEV4 1616 aa27.08■■□□□ 1.92
UPF3A-202ENST00000375299 SLKQ9H2G2 1235 aaPredicted RBP27.07■■□□□ 1.92
UPF3A-202ENST00000375299 CFAP70Q5T0N1 1121 aa27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 158.2 ms