RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 ECM2O94769 699 aaPredicted RBP5.76□□□□□ -1.49
MCF2-203ENST00000370576 FOXD1Q16676 465 aa5.76□□□□□ -1.49
MCF2-203ENST00000370576 CERS3Q8IU89 383 aa5.76□□□□□ -1.49
MCF2-203ENST00000370576 PTPRTO14522 1441 aa5.76□□□□□ -1.49
MCF2-203ENST00000370576 EFCAB6Q5THR3 1501 aa5.75□□□□□ -1.49
MCF2-203ENST00000370576 KNDC1Q76NI1 1749 aa5.75□□□□□ -1.49
MCF2-203ENST00000370576 MKRN3Q13064 507 aaKnown RBP5.75□□□□□ -1.49
MCF2-203ENST00000370576 ZFP91Q96JP5 570 aaPredicted RBP5.75□□□□□ -1.49
MCF2-203ENST00000370576 ZNF142P52746 1687 aaPredicted RBP5.75□□□□□ -1.49
MCF2-203ENST00000370576 UGGT1Q9NYU2 1555 aa5.75□□□□□ -1.49
MCF2-203ENST00000370576 IRF5Q13568 498 aa5.75□□□□□ -1.49
MCF2-203ENST00000370576 ARID3AQ99856 593 aa5.75□□□□□ -1.49
MCF2-203ENST00000370576 MFAP1P55081 439 aaKnown RBP5.74□□□□□ -1.49
MCF2-203ENST00000370576 NEUROD2Q15784 382 aa5.74□□□□□ -1.49
MCF2-203ENST00000370576 ARIH1Q9Y4X5 557 aaPredicted RBP5.74□□□□□ -1.49
MCF2-203ENST00000370576 CLTCQ00610 1675 aaKnown RBP5.73□□□□□ -1.49
MCF2-203ENST00000370576 USP54Q70EL1 1684 aa5.73□□□□□ -1.49
MCF2-203ENST00000370576 PRDM16Q9HAZ2 1276 aa5.73□□□□□ -1.49
MCF2-203ENST00000370576 RPRD2Q5VT52 1461 aaKnown RBP5.73□□□□□ -1.49
MCF2-203ENST00000370576 PREX1Q8TCU6 1659 aa5.73□□□□□ -1.49
MCF2-203ENST00000370576 PRAG1Q86YV5 1406 aa5.73□□□□□ -1.49
MCF2-203ENST00000370576 SETBP1Q9Y6X0 1596 aa5.73□□□□□ -1.49
MCF2-203ENST00000370576 CCDC82Q8N4S0 544 aa5.73□□□□□ -1.49
MCF2-203ENST00000370576 POGZQ7Z3K3 1410 aa5.73□□□□□ -1.49
MCF2-203ENST00000370576 AMOTL2Q9Y2J4 779 aa5.72□□□□□ -1.49
MCF2-203ENST00000370576 ADGRB3O60242 1522 aa5.72□□□□□ -1.49
MCF2-203ENST00000370576 TMEM131LA2VDJ0 1609 aa5.72□□□□□ -1.49
MCF2-203ENST00000370576 ZC3H4Q9UPT8 1303 aaKnown RBP5.72□□□□□ -1.49
MCF2-203ENST00000370576 APBB1O00213 710 aa5.72□□□□□ -1.49
MCF2-203ENST00000370576 ARHGAP31Q2M1Z3 1444 aa5.71□□□□□ -1.49
MCF2-203ENST00000370576 ASXL2Q76L83 1435 aa5.71□□□□□ -1.49
MCF2-203ENST00000370576 A6NJR5 290 aa5.71□□□□□ -1.49
MCF2-203ENST00000370576 OSCARQ8IYS5 282 aa5.71□□□□□ -1.49
MCF2-203ENST00000370576 CLTCL1P53675 1640 aa5.71□□□□□ -1.49
MCF2-203ENST00000370576 KIF1BO60333 1816 aa5.71□□□□□ -1.49
MCF2-203ENST00000370576 SYNMO15061 1565 aa5.71□□□□□ -1.49
MCF2-203ENST00000370576 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.71□□□□□ -1.5
MCF2-203ENST00000370576 SPATA31D1Q6ZQQ2 1576 aa5.7□□□□□ -1.5
MCF2-203ENST00000370576 UNCXA6NJT0 531 aa5.7□□□□□ -1.5
MCF2-203ENST00000370576 USP32Q8NFA0 1604 aa5.7□□□□□ -1.5
MCF2-203ENST00000370576 MYOM1P52179 1685 aa5.7□□□□□ -1.5
MCF2-203ENST00000370576 PKNOX2Q96KN3 472 aa5.7□□□□□ -1.5
MCF2-203ENST00000370576 RNF216Q9NWF9 866 aaPredicted RBP5.7□□□□□ -1.5
MCF2-203ENST00000370576 PLA2R1Q13018 1463 aa5.7□□□□□ -1.5
MCF2-203ENST00000370576 FNBP4Q8N3X1 1017 aaPredicted RBP5.69□□□□□ -1.5
MCF2-203ENST00000370576 C9orf84Q5VXU9 1444 aa5.69□□□□□ -1.5
MCF2-203ENST00000370576 FANCAO15360 1455 aa5.69□□□□□ -1.5
MCF2-203ENST00000370576 MYOM2P54296 1465 aa5.69□□□□□ -1.5
MCF2-203ENST00000370576 RAB3GAP2Q9H2M9 1393 aa5.69□□□□□ -1.5
MCF2-203ENST00000370576 TRAK2O60296 914 aa5.69□□□□□ -1.5
MCF2-203ENST00000370576 NEFLP07196 543 aa5.68□□□□□ -1.5
MCF2-203ENST00000370576 RBM25P49756 843 aaKnown RBP5.68□□□□□ -1.5
MCF2-203ENST00000370576 SPATA31E1Q6ZUB1 1445 aa5.68□□□□□ -1.5
MCF2-203ENST00000370576 KCNV2Q8TDN2 545 aa5.68□□□□□ -1.5
MCF2-203ENST00000370576 ADAMTSL3P82987 1691 aa5.68□□□□□ -1.5
MCF2-203ENST00000370576 ABCC3O15438 1527 aa5.68□□□□□ -1.5
MCF2-203ENST00000370576 CWC22Q9HCG8 908 aaKnown RBP5.68□□□□□ -1.5
MCF2-203ENST00000370576 NRXN3Q9Y4C0 1643 aa5.68□□□□□ -1.5
MCF2-203ENST00000370576 ANKRD30BQ9BXX2 1392 aa5.67□□□□□ -1.5
MCF2-203ENST00000370576 ARHGAP5Q13017 1502 aa5.67□□□□□ -1.5
MCF2-203ENST00000370576 CHMP7Q8WUX9 453 aaPredicted RBP5.67□□□□□ -1.5
MCF2-203ENST00000370576 FER1L4A9Z1Z3 1794 aa5.67□□□□□ -1.5
MCF2-203ENST00000370576 CHRM1P11229 460 aaPredicted RBP5.67□□□□□ -1.5
MCF2-203ENST00000370576 ZNF592Q92610 1267 aa5.67□□□□□ -1.5
MCF2-203ENST00000370576 MTUS2Q5JR59 1369 aa5.67□□□□□ -1.5
MCF2-203ENST00000370576 MYO5BQ9ULV0 1848 aa5.66□□□□□ -1.5
MCF2-203ENST00000370576 ANKRD26Q9UPS8 1709 aa5.66□□□□□ -1.5
MCF2-203ENST00000370576 RALGAPBQ86X10 1494 aa5.65□□□□□ -1.5
MCF2-203ENST00000370576 UBR1Q8IWV7 1749 aa5.65□□□□□ -1.51
MCF2-203ENST00000370576 ZEB1P37275 1124 aaPredicted RBP5.65□□□□□ -1.51
MCF2-203ENST00000370576 SPOCK2Q92563 424 aa5.65□□□□□ -1.51
MCF2-203ENST00000370576 ARHGEF28Q8N1W1 1705 aaKnown RBP5.65□□□□□ -1.51
MCF2-203ENST00000370576 NOS1P29475 1434 aa5.65□□□□□ -1.51
MCF2-203ENST00000370576 GPRASP1Q5JY77 1395 aa5.65□□□□□ -1.51
MCF2-203ENST00000370576 E9PSI1 815 aa5.64□□□□□ -1.51
MCF2-203ENST00000370576 MKRN4PQ13434 485 aaPredicted RBP5.64□□□□□ -1.51
MCF2-203ENST00000370576 TRAPPC8Q9Y2L5 1435 aa5.64□□□□□ -1.51
MCF2-203ENST00000370576 TOPAZ1Q8N9V7 1692 aa5.64□□□□□ -1.51
MCF2-203ENST00000370576 TMCO4Q5TGY1 634 aa5.64□□□□□ -1.51
MCF2-203ENST00000370576 NEXMIFQ5QGS0 1516 aa5.64□□□□□ -1.51
MCF2-203ENST00000370576 SPDYE4A6NLX3 237 aa5.63□□□□□ -1.51
MCF2-203ENST00000370576 ZFYVE9O95405 1425 aa5.63□□□□□ -1.51
MCF2-203ENST00000370576 SCAPERQ9BY12 1400 aa5.63□□□□□ -1.51
MCF2-203ENST00000370576 CLSTN1O94985 981 aa5.63□□□□□ -1.51
MCF2-203ENST00000370576 RNF25Q96BH1 459 aaPredicted RBP5.63□□□□□ -1.51
MCF2-203ENST00000370576 ADGRB2O60241 1585 aa5.63□□□□□ -1.51
MCF2-203ENST00000370576 ADGRB1O14514 1584 aa5.63□□□□□ -1.51
MCF2-203ENST00000370576 C3P01024 1663 aa5.63□□□□□ -1.51
MCF2-203ENST00000370576 CHGAP10645 457 aaKnown RBP5.62□□□□□ -1.51
MCF2-203ENST00000370576 GZF1Q9H116 711 aaPredicted RBP5.62□□□□□ -1.51
MCF2-203ENST00000370576 TESPA1A2RU30 521 aaPredicted RBP5.62□□□□□ -1.51
MCF2-203ENST00000370576 TEX2Q8IWB9 1127 aa5.62□□□□□ -1.51
MCF2-203ENST00000370576 ZNF316A6NFI3 1004 aaPredicted RBP5.61□□□□□ -1.51
MCF2-203ENST00000370576 AAMPQ13685 434 aa5.61□□□□□ -1.51
MCF2-203ENST00000370576 ADGRL1O94910 1474 aa5.61□□□□□ -1.51
MCF2-203ENST00000370576 CCDC27Q2M243 656 aa5.61□□□□□ -1.51
MCF2-203ENST00000370576 PLEKHG3A1L390 1219 aa5.61□□□□□ -1.51
MCF2-203ENST00000370576 IRX6P78412 446 aaPredicted RBP5.61□□□□□ -1.51
MCF2-203ENST00000370576 ANKRD50Q9ULJ7 1429 aa5.61□□□□□ -1.51
MCF2-203ENST00000370576 SIRT1Q96EB6 747 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms