RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 TIAM1Q13009 1591 aa7.37□□□□□ -1.23
UBE3D-202ENST00000369746 CLSPNQ9HAW4 1339 aa7.37□□□□□ -1.23
UBE3D-202ENST00000369746 ARID3AQ99856 593 aa7.37□□□□□ -1.23
UBE3D-202ENST00000369746 CDC42BPAQ5VT25 1732 aa7.37□□□□□ -1.23
UBE3D-202ENST00000369746 HSP90B1P14625 803 aaKnown RBP7.36□□□□□ -1.23
UBE3D-202ENST00000369746 ANKLE2Q86XL3 938 aa7.36□□□□□ -1.23
UBE3D-202ENST00000369746 RSPH4AQ5TD94 716 aa7.36□□□□□ -1.23
UBE3D-202ENST00000369746 UPF1Q92900 1129 aaKnown RBP eCLIP7.36□□□□□ -1.23
UBE3D-202ENST00000369746 GPATCH8Q9UKJ3 1502 aaKnown RBP7.35□□□□□ -1.23
UBE3D-202ENST00000369746 UBR1Q8IWV7 1749 aa7.35□□□□□ -1.23
UBE3D-202ENST00000369746 PAXIP1Q6ZW49 1069 aaPredicted RBP7.35□□□□□ -1.23
UBE3D-202ENST00000369746 ARHGEF5Q12774 1597 aa7.35□□□□□ -1.23
UBE3D-202ENST00000369746 PRDM15P57071 1507 aaPredicted RBP7.35□□□□□ -1.23
UBE3D-202ENST00000369746 MAP3K1Q13233 1512 aa7.35□□□□□ -1.23
UBE3D-202ENST00000369746 PHLPP1O60346 1717 aa7.35□□□□□ -1.23
UBE3D-202ENST00000369746 MIA2Q96PC5 1412 aa7.34□□□□□ -1.23
UBE3D-202ENST00000369746 ROBO1Q9Y6N7 1651 aa7.34□□□□□ -1.23
UBE3D-202ENST00000369746 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.34□□□□□ -1.23
UBE3D-202ENST00000369746 SCAF11Q99590 1463 aaKnown RBP7.34□□□□□ -1.23
UBE3D-202ENST00000369746 PIK3R4Q99570 1358 aa7.34□□□□□ -1.23
UBE3D-202ENST00000369746 MYT1LQ9UL68 1186 aa7.34□□□□□ -1.23
UBE3D-202ENST00000369746 A0A0U1RQG5 324 aaPredicted RBP7.33□□□□□ -1.24
UBE3D-202ENST00000369746 DHX29Q7Z478 1369 aaKnown RBP7.32□□□□□ -1.24
UBE3D-202ENST00000369746 LMTK2Q8IWU2 1503 aa7.32□□□□□ -1.24
UBE3D-202ENST00000369746 ATAD2Q6PL18 1390 aa7.31□□□□□ -1.24
UBE3D-202ENST00000369746 NCKAP5LQ9HCH0 1330 aa7.31□□□□□ -1.24
UBE3D-202ENST00000369746 SYCP2Q9BX26 1530 aa7.31□□□□□ -1.24
UBE3D-202ENST00000369746 NECTIN2Q92692 538 aa7.31□□□□□ -1.24
UBE3D-202ENST00000369746 TET3O43151 1660 aa7.31□□□□□ -1.24
UBE3D-202ENST00000369746 COL22A1Q8NFW1 1626 aaPredicted RBP7.31□□□□□ -1.24
UBE3D-202ENST00000369746 RPRD2Q5VT52 1461 aaKnown RBP7.3□□□□□ -1.24
UBE3D-202ENST00000369746 NPM3O75607 178 aaKnown RBP7.3□□□□□ -1.24
UBE3D-202ENST00000369746 NEUROD1Q13562 356 aa7.3□□□□□ -1.24
UBE3D-202ENST00000369746 CCDC9Q9Y3X0 531 aaKnown RBP7.3□□□□□ -1.24
UBE3D-202ENST00000369746 SETD5Q9C0A6 1442 aa7.3□□□□□ -1.24
UBE3D-202ENST00000369746 PRAG1Q86YV5 1406 aa7.3□□□□□ -1.24
UBE3D-202ENST00000369746 CASKIN1Q8WXD9 1431 aa7.3□□□□□ -1.24
UBE3D-202ENST00000369746 ERICH6BQ5W0A0 696 aa7.29□□□□□ -1.24
UBE3D-202ENST00000369746 PTCH1Q13635 1447 aa7.29□□□□□ -1.24
UBE3D-202ENST00000369746 FYCO1Q9BQS8 1478 aa7.29□□□□□ -1.24
UBE3D-202ENST00000369746 ZNF428Q96B54 188 aa7.29□□□□□ -1.24
UBE3D-202ENST00000369746 ERVK-7P63135 1459 aa7.28□□□□□ -1.24
UBE3D-202ENST00000369746 BRPF3Q9ULD4 1205 aa7.27□□□□□ -1.25
UBE3D-202ENST00000369746 POTEAQ6S8J7 498 aa7.27□□□□□ -1.25
UBE3D-202ENST00000369746 CEBPAP49715 358 aaPredicted RBP7.26□□□□□ -1.25
UBE3D-202ENST00000369746 PCGF6Q9BYE7 350 aa7.26□□□□□ -1.25
UBE3D-202ENST00000369746 CHD2O14647 1828 aaKnown RBP7.26□□□□□ -1.25
UBE3D-202ENST00000369746 NEXMIFQ5QGS0 1516 aa7.26□□□□□ -1.25
UBE3D-202ENST00000369746 KCNA6P17658 529 aa7.24□□□□□ -1.25
UBE3D-202ENST00000369746 PUS7Q96PZ0 661 aaKnown RBP7.24□□□□□ -1.25
UBE3D-202ENST00000369746 SPAG9O60271 1321 aaKnown RBP7.24□□□□□ -1.25
UBE3D-202ENST00000369746 ARHGAP35Q9NRY4 1499 aa7.24□□□□□ -1.25
UBE3D-202ENST00000369746 HMGB1P09429 215 aaKnown RBP7.23□□□□□ -1.25
UBE3D-202ENST00000369746 TSHZ2Q9NRE2 1034 aa7.23□□□□□ -1.25
UBE3D-202ENST00000369746 ZRANB1Q9UGI0 708 aa7.23□□□□□ -1.25
UBE3D-202ENST00000369746 ADGRB3O60242 1522 aa7.23□□□□□ -1.25
UBE3D-202ENST00000369746 MBD5Q9P267 1494 aa7.23□□□□□ -1.25
UBE3D-202ENST00000369746 IFFO2Q5TF58 517 aa7.23□□□□□ -1.25
UBE3D-202ENST00000369746 RALGAPBQ86X10 1494 aa7.23□□□□□ -1.25
UBE3D-202ENST00000369746 DISP2A7MBM2 1401 aa7.23□□□□□ -1.25
UBE3D-202ENST00000369746 LRRIQ1Q96JM4 1722 aa7.22□□□□□ -1.25
UBE3D-202ENST00000369746 AAMPQ13685 434 aa7.22□□□□□ -1.25
UBE3D-202ENST00000369746 NBR1Q14596 966 aa7.22□□□□□ -1.25
UBE3D-202ENST00000369746 EFCAB6Q5THR3 1501 aa7.22□□□□□ -1.25
UBE3D-202ENST00000369746 CCDC141Q6ZP82 1450 aa7.22□□□□□ -1.25
UBE3D-202ENST00000369746 RXRBP28702 533 aa7.21□□□□□ -1.25
UBE3D-202ENST00000369746 ZFP91Q96JP5 570 aaPredicted RBP7.21□□□□□ -1.25
UBE3D-202ENST00000369746 BCCIPQ9P287 314 aaKnown RBP eCLIP7.21□□□□□ -1.25
UBE3D-202ENST00000369746 MSH6P52701 1360 aa7.21□□□□□ -1.26
UBE3D-202ENST00000369746 EHBP1L1Q8N3D4 1523 aa7.21□□□□□ -1.26
UBE3D-202ENST00000369746 MARF1Q9Y4F3 1742 aaKnown RBP7.21□□□□□ -1.26
UBE3D-202ENST00000369746 RBM6P78332 1123 aaKnown RBP7.21□□□□□ -1.26
UBE3D-202ENST00000369746 MLECQ14165 292 aa7.2□□□□□ -1.26
UBE3D-202ENST00000369746 NGLY1Q96IV0 654 aa7.2□□□□□ -1.26
UBE3D-202ENST00000369746 CEP162Q5TB80 1403 aa7.2□□□□□ -1.26
UBE3D-202ENST00000369746 LRP6O75581 1613 aa7.2□□□□□ -1.26
UBE3D-202ENST00000369746 ATRNO75882 1429 aa7.2□□□□□ -1.26
UBE3D-202ENST00000369746 PARD3Q8TEW0 1356 aa7.19□□□□□ -1.26
UBE3D-202ENST00000369746 TMED8Q6PL24 325 aaPredicted RBP7.19□□□□□ -1.26
UBE3D-202ENST00000369746 NAP1L5Q96NT1 182 aaPredicted RBP7.19□□□□□ -1.26
UBE3D-202ENST00000369746 C1orf115Q9H7X2 142 aa7.19□□□□□ -1.26
UBE3D-202ENST00000369746 CROCC2H7BZ55 1655 aa7.19□□□□□ -1.26
UBE3D-202ENST00000369746 RGPD3A6NKT7 1758 aaPredicted RBP7.19□□□□□ -1.26
UBE3D-202ENST00000369746 RGPD4Q7Z3J3 1758 aa7.19□□□□□ -1.26
UBE3D-202ENST00000369746 RGS12O14924 1447 aa7.19□□□□□ -1.26
UBE3D-202ENST00000369746 BLMP54132 1417 aaPredicted RBP7.19□□□□□ -1.26
UBE3D-202ENST00000369746 ZNF592Q92610 1267 aa7.19□□□□□ -1.26
UBE3D-202ENST00000369746 DUOX2Q9NRD8 1548 aa7.19□□□□□ -1.26
UBE3D-202ENST00000369746 ERBINQ96RT1 1412 aa7.18□□□□□ -1.26
UBE3D-202ENST00000369746 AFAP1Q8N556 730 aa7.18□□□□□ -1.26
UBE3D-202ENST00000369746 PLEKHG1Q9ULL1 1385 aa7.18□□□□□ -1.26
UBE3D-202ENST00000369746 RGPD1P0DJD0 1748 aa7.18□□□□□ -1.26
UBE3D-202ENST00000369746 IQGAP3Q86VI3 1631 aa7.17□□□□□ -1.26
UBE3D-202ENST00000369746 TMEM2Q9UHN6 1383 aa7.17□□□□□ -1.26
UBE3D-202ENST00000369746 TRPM2O94759 1503 aa7.17□□□□□ -1.26
UBE3D-202ENST00000369746 CEP152O94986 1710 aa7.17□□□□□ -1.26
UBE3D-202ENST00000369746 PIP4K2BP78356 416 aa7.16□□□□□ -1.26
UBE3D-202ENST00000369746 RSPH6AQ9H0K4 717 aa7.16□□□□□ -1.26
UBE3D-202ENST00000369746 BCL9LQ86UU0 1499 aa7.16□□□□□ -1.26
UBE3D-202ENST00000369746 ZBTB7CA1YPR0 619 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms