RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 RRP1P56182 461 aaKnown RBP12.3□□□□□ -0.44
SMG6-202ENST00000354901 PER1O15534 1290 aaPredicted RBP12.29□□□□□ -0.44
SMG6-202ENST00000354901 RNF123Q5XPI4 1314 aa12.29□□□□□ -0.44
SMG6-202ENST00000354901 PLA2R1Q13018 1463 aa12.29□□□□□ -0.44
SMG6-202ENST00000354901 ADGRL1O94910 1474 aa12.29□□□□□ -0.44
SMG6-202ENST00000354901 LRPPRCP42704 1394 aaKnown RBP12.29□□□□□ -0.44
SMG6-202ENST00000354901 TRAPPC8Q9Y2L5 1435 aa12.28□□□□□ -0.44
SMG6-202ENST00000354901 TMF1P82094 1093 aa12.28□□□□□ -0.44
SMG6-202ENST00000354901 TESK2Q96S53 571 aa12.28□□□□□ -0.44
SMG6-202ENST00000354901 GLI2P10070 1586 aa12.28□□□□□ -0.44
SMG6-202ENST00000354901 HSP90AA2PQ14568 343 aaPredicted RBP12.28□□□□□ -0.44
SMG6-202ENST00000354901 A2MP01023 1474 aa12.28□□□□□ -0.44
SMG6-202ENST00000354901 ATP7AQ04656 1500 aa12.28□□□□□ -0.44
SMG6-202ENST00000354901 PDE4AP27815 886 aa12.28□□□□□ -0.44
SMG6-202ENST00000354901 AFAP1Q8N556 730 aa12.28□□□□□ -0.44
SMG6-202ENST00000354901 DEPDC5O75140 1603 aa12.27□□□□□ -0.44
SMG6-202ENST00000354901 NEO1Q92859 1461 aa12.27□□□□□ -0.45
SMG6-202ENST00000354901 SPAG9O60271 1321 aaKnown RBP12.27□□□□□ -0.45
SMG6-202ENST00000354901 RIMBP3CA6NJZ7 1639 aa12.26□□□□□ -0.45
SMG6-202ENST00000354901 RIMBP3BA6NNM3 1639 aa12.26□□□□□ -0.45
SMG6-202ENST00000354901 RIMBP3Q9UFD9 1639 aa12.26□□□□□ -0.45
SMG6-202ENST00000354901 ZNF518AQ6AHZ1 1483 aa12.26□□□□□ -0.45
SMG6-202ENST00000354901 ATP10AO60312 1499 aa12.25□□□□□ -0.45
SMG6-202ENST00000354901 CD109Q6YHK3 1445 aa12.25□□□□□ -0.45
SMG6-202ENST00000354901 PARD3Q8TEW0 1356 aa12.25□□□□□ -0.45
SMG6-202ENST00000354901 SCAPERQ9BY12 1400 aa12.24□□□□□ -0.45
SMG6-202ENST00000354901 FRAT2O75474 233 aaPredicted RBP12.24□□□□□ -0.45
SMG6-202ENST00000354901 KNSTRNQ9Y448 316 aa12.24□□□□□ -0.45
SMG6-202ENST00000354901 MAP3K4Q9Y6R4 1608 aa12.23□□□□□ -0.45
SMG6-202ENST00000354901 ADAMTS8Q9UP79 889 aa12.23□□□□□ -0.45
SMG6-202ENST00000354901 HSP90AA1P07900 732 aaKnown RBP12.23□□□□□ -0.45
SMG6-202ENST00000354901 FAM43AQ8N2R8 423 aa12.22□□□□□ -0.45
SMG6-202ENST00000354901 TRPM1Q7Z4N2 1603 aa12.22□□□□□ -0.45
SMG6-202ENST00000354901 MLH3Q9UHC1 1453 aa12.21□□□□□ -0.45
SMG6-202ENST00000354901 VWDEQ8N2E2 1590 aa12.21□□□□□ -0.45
SMG6-202ENST00000354901 POGZQ7Z3K3 1410 aa12.21□□□□□ -0.45
SMG6-202ENST00000354901 WDR43Q15061 677 aaKnown RBP eCLIP12.21□□□□□ -0.46
SMG6-202ENST00000354901 RRAGDQ9NQL2 400 aaPredicted RBP12.21□□□□□ -0.46
SMG6-202ENST00000354901 TET3O43151 1660 aa12.2□□□□□ -0.46
SMG6-202ENST00000354901 COL17A1Q9UMD9 1497 aaPredicted RBP12.2□□□□□ -0.46
SMG6-202ENST00000354901 CRBNQ96SW2 442 aa12.2□□□□□ -0.46
SMG6-202ENST00000354901 KIDINS220Q9ULH0 1771 aa12.2□□□□□ -0.46
SMG6-202ENST00000354901 PRDM15P57071 1507 aaPredicted RBP12.2□□□□□ -0.46
SMG6-202ENST00000354901 CCDC146Q8IYE0 955 aa12.2□□□□□ -0.46
SMG6-202ENST00000354901 HECW2Q9P2P5 1572 aa12.2□□□□□ -0.46
SMG6-202ENST00000354901 KANK1Q14678 1352 aa12.19□□□□□ -0.46
SMG6-202ENST00000354901 KIF3BO15066 747 aa12.19□□□□□ -0.46
SMG6-202ENST00000354901 PDE3BQ13370 1112 aa12.19□□□□□ -0.46
SMG6-202ENST00000354901 GPRASP1Q5JY77 1395 aa12.19□□□□□ -0.46
SMG6-202ENST00000354901 C20orf194Q5TEA3 1177 aa12.19□□□□□ -0.46
SMG6-202ENST00000354901 RNF17Q9BXT8 1623 aaKnown RBP12.19□□□□□ -0.46
SMG6-202ENST00000354901 ARID3AQ99856 593 aa12.19□□□□□ -0.46
SMG6-202ENST00000354901 PNNQ9H307 717 aaKnown RBP12.19□□□□□ -0.46
SMG6-202ENST00000354901 CHGAP10645 457 aaKnown RBP12.18□□□□□ -0.46
SMG6-202ENST00000354901 SENP3Q9H4L4 574 aaPredicted RBP12.18□□□□□ -0.46
SMG6-202ENST00000354901 NEURL4Q96JN8 1562 aa12.18□□□□□ -0.46
SMG6-202ENST00000354901 PPP2R1AP30153 589 aa12.17□□□□□ -0.46
SMG6-202ENST00000354901 E9PCH4 1651 aa12.17□□□□□ -0.46
SMG6-202ENST00000354901 LMTK2Q8IWU2 1503 aa12.17□□□□□ -0.46
SMG6-202ENST00000354901 DDRGK1Q96HY6 314 aa12.16□□□□□ -0.46
SMG6-202ENST00000354901 CFAP70Q5T0N1 1121 aa12.16□□□□□ -0.46
SMG6-202ENST00000354901 TRPM2O94759 1503 aa12.15□□□□□ -0.46
SMG6-202ENST00000354901 PDE4CQ08493 712 aa12.15□□□□□ -0.46
SMG6-202ENST00000354901 TCERG1O14776 1098 aaKnown RBP12.15□□□□□ -0.46
SMG6-202ENST00000354901 STAC3Q96MF2 364 aa12.15□□□□□ -0.46
SMG6-202ENST00000354901 BACH2Q9BYV9 841 aa12.15□□□□□ -0.46
SMG6-202ENST00000354901 SPHKAPQ2M3C7 1700 aa12.15□□□□□ -0.46
SMG6-202ENST00000354901 DIP2BQ9P265 1576 aa12.14□□□□□ -0.47
SMG6-202ENST00000354901 PTPRTO14522 1441 aa12.14□□□□□ -0.47
SMG6-202ENST00000354901 MROH1Q8NDA8 1641 aa12.14□□□□□ -0.47
SMG6-202ENST00000354901 TNNT2P45379 298 aaPredicted RBP12.14□□□□□ -0.47
SMG6-202ENST00000354901 POGKQ9P215 609 aa12.14□□□□□ -0.47
SMG6-202ENST00000354901 LAMC1P11047 1609 aa12.14□□□□□ -0.47
SMG6-202ENST00000354901 RICTORQ6R327 1708 aa12.13□□□□□ -0.47
SMG6-202ENST00000354901 AMER1Q5JTC6 1135 aaPredicted RBP12.13□□□□□ -0.47
SMG6-202ENST00000354901 GZF1Q9H116 711 aaPredicted RBP12.13□□□□□ -0.47
SMG6-202ENST00000354901 CEP152O94986 1710 aa12.13□□□□□ -0.47
SMG6-202ENST00000354901 PLEKHH1Q9ULM0 1364 aa12.12□□□□□ -0.47
SMG6-202ENST00000354901 RBM10P98175 930 aaKnown RBP12.12□□□□□ -0.47
SMG6-202ENST00000354901 ZMYM4Q5VZL5 1548 aa12.12□□□□□ -0.47
SMG6-202ENST00000354901 APAF1O14727 1248 aa12.12□□□□□ -0.47
SMG6-202ENST00000354901 CDCA8Q53HL2 280 aa12.11□□□□□ -0.47
SMG6-202ENST00000354901 SLKQ9H2G2 1235 aaPredicted RBP12.11□□□□□ -0.47
SMG6-202ENST00000354901 EFCAB6Q5THR3 1501 aa12.1□□□□□ -0.47
SMG6-202ENST00000354901 GOLGA2Q08379 1002 aa12.1□□□□□ -0.47
SMG6-202ENST00000354901 NEUROD2Q15784 382 aa12.1□□□□□ -0.47
SMG6-202ENST00000354901 CYB5RLQ6IPT4 315 aa12.1□□□□□ -0.47
SMG6-202ENST00000354901 ABCA6Q8N139 1617 aa12.1□□□□□ -0.47
SMG6-202ENST00000354901 ADGRF5Q8IZF2 1346 aa12.1□□□□□ -0.47
SMG6-202ENST00000354901 BLMP54132 1417 aaPredicted RBP12.1□□□□□ -0.47
SMG6-202ENST00000354901 DUSP27Q5VZP5 1158 aa12.09□□□□□ -0.47
SMG6-202ENST00000354901 ZC3H13Q5T200 1668 aaKnown RBP12.09□□□□□ -0.47
SMG6-202ENST00000354901 FRMPD1Q5SYB0 1578 aa12.09□□□□□ -0.47
SMG6-202ENST00000354901 RGS3P49796 1198 aa12.09□□□□□ -0.47
SMG6-202ENST00000354901 NUTM2DQ5VT03 806 aaPredicted RBP12.09□□□□□ -0.47
SMG6-202ENST00000354901 DIP2CQ9Y2E4 1556 aa12.08□□□□□ -0.48
SMG6-202ENST00000354901 SPINK5Q9NQ38 1064 aaPredicted RBP12.08□□□□□ -0.48
SMG6-202ENST00000354901 REREQ9P2R6 1566 aa12.08□□□□□ -0.48
SMG6-202ENST00000354901 TRAK1Q9UPV9 953 aa12.07□□□□□ -0.48
SMG6-202ENST00000354901 GGT6Q6P531 493 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms