RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 RTEL1-TNFRSF6BF6WH68 1400 aa32.41■■■□□ 2.78
CPNE1-202ENST00000352393 KIAA1210Q9ULL0 1709 aa32.4■■■□□ 2.78
CPNE1-202ENST00000352393 CRBNQ96SW2 442 aa32.4■■■□□ 2.78
CPNE1-202ENST00000352393 ADAMTS8Q9UP79 889 aa32.39■■■□□ 2.78
CPNE1-202ENST00000352393 ASXL1Q8IXJ9 1541 aa32.39■■■□□ 2.78
CPNE1-202ENST00000352393 PPP2R1AP30153 589 aa32.39■■■□□ 2.78
CPNE1-202ENST00000352393 AMER1Q5JTC6 1135 aaPredicted RBP32.38■■■□□ 2.77
CPNE1-202ENST00000352393 KNSTRNQ9Y448 316 aa32.36■■■□□ 2.77
CPNE1-202ENST00000352393 PLEKHH1Q9ULM0 1364 aa32.36■■■□□ 2.77
CPNE1-202ENST00000352393 STAC3Q96MF2 364 aa32.36■■■□□ 2.77
CPNE1-202ENST00000352393 PIK3C2GO75747 1445 aa32.36■■■□□ 2.77
CPNE1-202ENST00000352393 VWDEQ8N2E2 1590 aa32.34■■■□□ 2.77
CPNE1-202ENST00000352393 NEURL4Q96JN8 1562 aa32.34■■■□□ 2.77
CPNE1-202ENST00000352393 CDCA8Q53HL2 280 aa32.33■■■□□ 2.77
CPNE1-202ENST00000352393 ZNF521Q96K83 1311 aa32.33■■■□□ 2.77
CPNE1-202ENST00000352393 KDM5AP29375 1690 aaKnown RBP32.33■■■□□ 2.77
CPNE1-202ENST00000352393 SPAG9O60271 1321 aaKnown RBP32.32■■■□□ 2.76
CPNE1-202ENST00000352393 NPC1L1Q9UHC9 1359 aa32.32■■■□□ 2.76
CPNE1-202ENST00000352393 INO80Q9ULG1 1556 aaPredicted RBP32.31■■■□□ 2.76
CPNE1-202ENST00000352393 NPM2Q86SE8 214 aaKnown RBP32.31■■■□□ 2.76
CPNE1-202ENST00000352393 WDR43Q15061 677 aaKnown RBP eCLIP32.29■■■□□ 2.76
CPNE1-202ENST00000352393 DUSP27Q5VZP5 1158 aa32.29■■■□□ 2.76
CPNE1-202ENST00000352393 EIF3AQ14152 1382 aaKnown RBP32.26■■■□□ 2.76
CPNE1-202ENST00000352393 C20orf194Q5TEA3 1177 aa32.26■■■□□ 2.76
CPNE1-202ENST00000352393 KDM2BQ8NHM5 1336 aa32.26■■■□□ 2.75
CPNE1-202ENST00000352393 ATP7AQ04656 1500 aa32.25■■■□□ 2.75
CPNE1-202ENST00000352393 RTL5Q5HYW3 569 aaPredicted RBP32.25■■■□□ 2.75
CPNE1-202ENST00000352393 ABCA9Q8IUA7 1624 aa32.23■■■□□ 2.75
CPNE1-202ENST00000352393 ABCA6Q8N139 1617 aa32.22■■■□□ 2.75
CPNE1-202ENST00000352393 MAP3K4Q9Y6R4 1608 aa32.22■■■□□ 2.75
CPNE1-202ENST00000352393 AFAP1Q8N556 730 aa32.21■■■□□ 2.75
CPNE1-202ENST00000352393 MYOM2P54296 1465 aa32.21■■■□□ 2.75
CPNE1-202ENST00000352393 MROH1Q8NDA8 1641 aa32.2■■■□□ 2.75
CPNE1-202ENST00000352393 IFT172Q9UG01 1749 aa32.2■■■□□ 2.74
CPNE1-202ENST00000352393 GOLGA2Q08379 1002 aa32.2■■■□□ 2.74
CPNE1-202ENST00000352393 SKAP1Q86WV1 359 aa32.18■■■□□ 2.74
CPNE1-202ENST00000352393 KANK1Q14678 1352 aa32.17■■■□□ 2.74
CPNE1-202ENST00000352393 ERVK-7P63135 1459 aa32.16■■■□□ 2.74
CPNE1-202ENST00000352393 CENPQQ7L2Z9 268 aaPredicted RBP32.15■■■□□ 2.74
CPNE1-202ENST00000352393 KIF1BO60333 1816 aa32.14■■■□□ 2.74
CPNE1-202ENST00000352393 SLFN5Q08AF3 891 aa32.14■■■□□ 2.74
CPNE1-202ENST00000352393 MYO3AQ8NEV4 1616 aa32.14■■■□□ 2.74
CPNE1-202ENST00000352393 TRMT2AQ8IZ69 625 aaKnown RBP32.12■■■□□ 2.73
CPNE1-202ENST00000352393 UGGT1Q9NYU2 1555 aa32.11■■■□□ 2.73
CPNE1-202ENST00000352393 FANCAO15360 1455 aa32.1■■■□□ 2.73
CPNE1-202ENST00000352393 GOLGA6L2Q8N9W4 650 aaPredicted RBP32.1■■■□□ 2.73
CPNE1-202ENST00000352393 MROH2AA6NES4 1674 aa32.1■■■□□ 2.73
CPNE1-202ENST00000352393 EFCAB6Q5THR3 1501 aa32.09■■■□□ 2.73
CPNE1-202ENST00000352393 DDRGK1Q96HY6 314 aa32.08■■■□□ 2.73
CPNE1-202ENST00000352393 NKTRP30414 1462 aaKnown RBP32.07■■■□□ 2.72
CPNE1-202ENST00000352393 NRXN1Q9ULB1 1477 aa32.06■■■□□ 2.72
CPNE1-202ENST00000352393 SLC24A1O60721 1099 aa32.05■■■□□ 2.72
CPNE1-202ENST00000352393 USP35Q9P2H5 1018 aa32.05■■■□□ 2.72
CPNE1-202ENST00000352393 CCDC146Q8IYE0 955 aa32.04■■■□□ 2.72
CPNE1-202ENST00000352393 LAS1LQ9Y4W2 734 aaKnown RBP32.04■■■□□ 2.72
CPNE1-202ENST00000352393 PPRC1Q5VV67 1664 aaKnown RBP32.03■■■□□ 2.72
CPNE1-202ENST00000352393 CFAP70Q5T0N1 1121 aa32.02■■■□□ 2.72
CPNE1-202ENST00000352393 ADGRL1O94910 1474 aa32.02■■■□□ 2.72
CPNE1-202ENST00000352393 SBNO2Q9Y2G9 1366 aa32.01■■■□□ 2.72
CPNE1-202ENST00000352393 KIF3BO15066 747 aa32.01■■■□□ 2.71
CPNE1-202ENST00000352393 PPM1GO15355 546 aaPredicted RBP32■■■□□ 2.71
CPNE1-202ENST00000352393 ADGRF5Q8IZF2 1346 aa32■■■□□ 2.71
CPNE1-202ENST00000352393 SPINK5Q9NQ38 1064 aaPredicted RBP32■■■□□ 2.71
CPNE1-202ENST00000352393 APAF1O14727 1248 aa31.99■■■□□ 2.71
CPNE1-202ENST00000352393 NEFMP07197 916 aa31.98■■■□□ 2.71
CPNE1-202ENST00000352393 LMTK2Q8IWU2 1503 aa31.98■■■□□ 2.71
CPNE1-202ENST00000352393 SETBP1Q9Y6X0 1596 aa31.98■■■□□ 2.71
CPNE1-202ENST00000352393 ZC3H13Q5T200 1668 aaKnown RBP31.97■■■□□ 2.71
CPNE1-202ENST00000352393 CARD14Q9BXL6 1004 aa31.97■■■□□ 2.71
CPNE1-202ENST00000352393 KIDINS220Q9ULH0 1771 aa31.97■■■□□ 2.71
CPNE1-202ENST00000352393 ADGRB3O60242 1522 aa31.96■■■□□ 2.71
CPNE1-202ENST00000352393 NGEFQ8N5V2 710 aa31.96■■■□□ 2.71
CPNE1-202ENST00000352393 E9PSI1 815 aa31.96■■■□□ 2.71
CPNE1-202ENST00000352393 FAM161AQ3B820 660 aa31.96■■■□□ 2.71
CPNE1-202ENST00000352393 SHPRHQ149N8 1683 aa31.95■■■□□ 2.71
CPNE1-202ENST00000352393 C8orf34Q49A92 452 aa31.95■■■□□ 2.71
CPNE1-202ENST00000352393 VIRMAQ69YN4 1812 aaKnown RBP31.93■■■□□ 2.7
CPNE1-202ENST00000352393 POLR3AO14802 1390 aaPredicted RBP31.93■■■□□ 2.7
CPNE1-202ENST00000352393 PPLO60437 1756 aa31.88■■■□□ 2.69
CPNE1-202ENST00000352393 QRICH2Q9H0J4 1663 aa31.88■■■□□ 2.69
CPNE1-202ENST00000352393 DMRT2Q9Y5R5 561 aa31.88■■■□□ 2.69
CPNE1-202ENST00000352393 BCAR3O75815 825 aa31.87■■■□□ 2.69
CPNE1-202ENST00000352393 NINLQ9Y2I6 1382 aa31.86■■■□□ 2.69
CPNE1-202ENST00000352393 USP32Q8NFA0 1604 aa31.86■■■□□ 2.69
CPNE1-202ENST00000352393 NOS1P29475 1434 aa31.86■■■□□ 2.69
CPNE1-202ENST00000352393 CENPJQ9HC77 1338 aaPredicted RBP31.83■■■□□ 2.69
CPNE1-202ENST00000352393 ADGRB1O14514 1584 aa31.82■■■□□ 2.68
CPNE1-202ENST00000352393 IQSEC2Q5JU85 1478 aa31.82■■■□□ 2.68
CPNE1-202ENST00000352393 NSD3Q9BZ95 1437 aa31.81■■■□□ 2.68
CPNE1-202ENST00000352393 CGNL1Q0VF96 1302 aa31.8■■■□□ 2.68
CPNE1-202ENST00000352393 PDE3AQ14432 1141 aa31.79■■■□□ 2.68
CPNE1-202ENST00000352393 ZNF518AQ6AHZ1 1483 aa31.79■■■□□ 2.68
CPNE1-202ENST00000352393 RGS3P49796 1198 aa31.78■■■□□ 2.68
CPNE1-202ENST00000352393 WWC1Q8IX03 1113 aa31.78■■■□□ 2.68
CPNE1-202ENST00000352393 ASXL2Q76L83 1435 aa31.77■■■□□ 2.68
CPNE1-202ENST00000352393 SLC4A3P48751 1232 aa31.73■■■□□ 2.67
CPNE1-202ENST00000352393 NPATQ14207 1427 aa31.73■■■□□ 2.67
CPNE1-202ENST00000352393 FRMPD1Q5SYB0 1578 aa31.73■■■□□ 2.67
CPNE1-202ENST00000352393 IGHDP01880 384 aa31.72■■■□□ 2.67
CPNE1-202ENST00000352393 HECW2Q9P2P5 1572 aa31.72■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms