RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 MSNP26038 577 aaKnown RBP13.54□□□□□ -0.24
CAPN3-203ENST00000349748 TNNT2P45379 298 aaPredicted RBP13.54□□□□□ -0.24
CAPN3-203ENST00000349748 TERF1P54274 439 aa13.53□□□□□ -0.24
CAPN3-203ENST00000349748 NBPF8Q3BBV2 869 aa13.53□□□□□ -0.24
CAPN3-203ENST00000349748 ABCA8O94911 1581 aa13.52□□□□□ -0.24
CAPN3-203ENST00000349748 CCDC94Q9BW85 323 aaPredicted RBP13.52□□□□□ -0.24
CAPN3-203ENST00000349748 LRPPRCP42704 1394 aaKnown RBP13.52□□□□□ -0.25
CAPN3-203ENST00000349748 XPCQ01831 940 aaPredicted RBP13.52□□□□□ -0.25
CAPN3-203ENST00000349748 GCC2Q8IWJ2 1684 aa13.51□□□□□ -0.25
CAPN3-203ENST00000349748 CBX1P83916 185 aa13.5□□□□□ -0.25
CAPN3-203ENST00000349748 MTERF4Q7Z6M4 381 aaKnown RBP13.5□□□□□ -0.25
CAPN3-203ENST00000349748 ZFP91Q96JP5 570 aaPredicted RBP13.5□□□□□ -0.25
CAPN3-203ENST00000349748 ZNF644Q9H582 1327 aaPredicted RBP13.5□□□□□ -0.25
CAPN3-203ENST00000349748 FTSJ3Q8IY81 847 aaKnown RBP13.49□□□□□ -0.25
CAPN3-203ENST00000349748 MPHOSPH9Q99550 1183 aa13.49□□□□□ -0.25
CAPN3-203ENST00000349748 CFDP1Q9UEE9 299 aaPredicted RBP13.49□□□□□ -0.25
CAPN3-203ENST00000349748 TCOF1Q13428 1488 aaKnown RBP13.49□□□□□ -0.25
CAPN3-203ENST00000349748 ZNF326Q5BKZ1 582 aaKnown RBP13.49□□□□□ -0.25
CAPN3-203ENST00000349748 TROQ12816 1431 aaPredicted RBP13.49□□□□□ -0.25
CAPN3-203ENST00000349748 KIF20AO95235 890 aa13.48□□□□□ -0.25
CAPN3-203ENST00000349748 KCNA4P22459 653 aa13.48□□□□□ -0.25
CAPN3-203ENST00000349748 PDE3BQ13370 1112 aa13.48□□□□□ -0.25
CAPN3-203ENST00000349748 JARID2Q92833 1246 aaPredicted RBP13.48□□□□□ -0.25
CAPN3-203ENST00000349748 ABCC2Q92887 1545 aa13.48□□□□□ -0.25
CAPN3-203ENST00000349748 DYNC1I1O14576 645 aa13.47□□□□□ -0.25
CAPN3-203ENST00000349748 CCDC173Q0VFZ6 552 aa13.47□□□□□ -0.25
CAPN3-203ENST00000349748 ISY1Q9ULR0 285 aaKnown RBP13.47□□□□□ -0.25
CAPN3-203ENST00000349748 IGSF3O75054 1194 aa13.47□□□□□ -0.25
CAPN3-203ENST00000349748 GTPBP4Q9BZE4 634 aaKnown RBP13.46□□□□□ -0.26
CAPN3-203ENST00000349748 CGNQ9P2M7 1197 aaKnown RBP13.46□□□□□ -0.26
CAPN3-203ENST00000349748 SPATA31E1Q6ZUB1 1445 aa13.46□□□□□ -0.26
CAPN3-203ENST00000349748 PPP1R9BQ96SB3 815 aa13.45□□□□□ -0.26
CAPN3-203ENST00000349748 NASPP49321 788 aaPredicted RBP13.45□□□□□ -0.26
CAPN3-203ENST00000349748 CHMP5Q9NZZ3 219 aa13.45□□□□□ -0.26
CAPN3-203ENST00000349748 E9PSI1 815 aa13.44□□□□□ -0.26
CAPN3-203ENST00000349748 TSC1Q92574 1164 aa13.44□□□□□ -0.26
CAPN3-203ENST00000349748 CHMP4AQ9BY43 222 aa13.44□□□□□ -0.26
CAPN3-203ENST00000349748 NLRP1Q9C000 1473 aa13.44□□□□□ -0.26
CAPN3-203ENST00000349748 ZBTB7CA1YPR0 619 aa13.44□□□□□ -0.26
CAPN3-203ENST00000349748 LETM1O95202 739 aaPredicted RBP13.44□□□□□ -0.26
CAPN3-203ENST00000349748 CDK11BP21127 795 aaKnown RBP13.44□□□□□ -0.26
CAPN3-203ENST00000349748 ADCY10Q96PN6 1610 aa13.44□□□□□ -0.26
CAPN3-203ENST00000349748 DDX11L8A8MPP1 907 aa13.44□□□□□ -0.26
CAPN3-203ENST00000349748 DNTTIP2Q5QJE6 756 aaKnown RBP13.43□□□□□ -0.26
CAPN3-203ENST00000349748 PANK3Q9H999 370 aa13.42□□□□□ -0.26
CAPN3-203ENST00000349748 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.42□□□□□ -0.26
CAPN3-203ENST00000349748 ATP2B3Q16720 1220 aa13.41□□□□□ -0.26
CAPN3-203ENST00000349748 TBC1D32Q96NH3 1257 aa13.41□□□□□ -0.26
CAPN3-203ENST00000349748 TEX14Q8IWB6 1497 aa13.41□□□□□ -0.26
CAPN3-203ENST00000349748 IGHDP01880 384 aa13.41□□□□□ -0.26
CAPN3-203ENST00000349748 ANKRD30BQ9BXX2 1392 aa13.41□□□□□ -0.26
CAPN3-203ENST00000349748 KIF14Q15058 1648 aa13.41□□□□□ -0.26
CAPN3-203ENST00000349748 ADRA2BP18089 450 aa13.41□□□□□ -0.26
CAPN3-203ENST00000349748 DHX37Q8IY37 1157 aaKnown RBP13.41□□□□□ -0.26
CAPN3-203ENST00000349748 SECISBP2LQ93073 1101 aaKnown RBP13.41□□□□□ -0.26
CAPN3-203ENST00000349748 BRD4O60885 1362 aaPredicted RBP13.4□□□□□ -0.26
CAPN3-203ENST00000349748 MYBBP1AQ9BQG0 1328 aaKnown RBP13.4□□□□□ -0.26
CAPN3-203ENST00000349748 TRHP20396 242 aaPredicted RBP13.4□□□□□ -0.26
CAPN3-203ENST00000349748 CERS3Q8IU89 383 aa13.4□□□□□ -0.26
CAPN3-203ENST00000349748 UPF2Q9HAU5 1272 aaKnown RBP13.4□□□□□ -0.26
CAPN3-203ENST00000349748 RPRD2Q5VT52 1461 aaKnown RBP13.4□□□□□ -0.26
CAPN3-203ENST00000349748 ZNF500O60304 480 aaPredicted RBP13.39□□□□□ -0.27
CAPN3-203ENST00000349748 HNRNPMP52272 730 aaKnown RBP eCLIP13.39□□□□□ -0.27
CAPN3-203ENST00000349748 UHRF1BP1LA0JNW5 1464 aa13.39□□□□□ -0.27
CAPN3-203ENST00000349748 SPDYE4A6NLX3 237 aa13.38□□□□□ -0.27
CAPN3-203ENST00000349748 SASS6Q6UVJ0 657 aa13.38□□□□□ -0.27
CAPN3-203ENST00000349748 ASXL2Q76L83 1435 aa13.38□□□□□ -0.27
CAPN3-203ENST00000349748 NOL7Q9UMY1 257 aaKnown RBP13.38□□□□□ -0.27
CAPN3-203ENST00000349748 FAM177BA6PVY3 158 aa13.38□□□□□ -0.27
CAPN3-203ENST00000349748 ZNF710Q8N1W2 664 aa13.38□□□□□ -0.27
CAPN3-203ENST00000349748 MIA2Q96PC5 1412 aa13.38□□□□□ -0.27
CAPN3-203ENST00000349748 GPATCH8Q9UKJ3 1502 aaKnown RBP13.37□□□□□ -0.27
CAPN3-203ENST00000349748 ZCCHC11Q5TAX3 1644 aaKnown RBP13.37□□□□□ -0.27
CAPN3-203ENST00000349748 TNPO1Q92973 898 aaKnown RBP13.36□□□□□ -0.27
CAPN3-203ENST00000349748 DAPK1P53355 1430 aa13.36□□□□□ -0.27
CAPN3-203ENST00000349748 ZNF692Q9BU19 519 aaPredicted RBP13.35□□□□□ -0.27
CAPN3-203ENST00000349748 IRX5P78411 483 aaPredicted RBP13.35□□□□□ -0.27
CAPN3-203ENST00000349748 ABCC5O15440 1437 aa13.35□□□□□ -0.27
CAPN3-203ENST00000349748 FAM69CQ0P6D2 419 aa13.34□□□□□ -0.27
CAPN3-203ENST00000349748 TEX2Q8IWB9 1127 aa13.34□□□□□ -0.27
CAPN3-203ENST00000349748 KIF15Q9NS87 1388 aa13.34□□□□□ -0.27
CAPN3-203ENST00000349748 SLC4A1APQ9BWU0 796 aaKnown RBP13.34□□□□□ -0.27
CAPN3-203ENST00000349748 POLR1AO95602 1720 aaPredicted RBP13.34□□□□□ -0.27
CAPN3-203ENST00000349748 WDR7Q9Y4E6 1490 aa13.33□□□□□ -0.28
CAPN3-203ENST00000349748 CSPP1Q1MSJ5 1256 aa13.32□□□□□ -0.28
CAPN3-203ENST00000349748 KCNJ4P48050 445 aa13.32□□□□□ -0.28
CAPN3-203ENST00000349748 RALBP1Q15311 655 aa13.32□□□□□ -0.28
CAPN3-203ENST00000349748 ZKSCAN5Q9Y2L8 839 aa13.32□□□□□ -0.28
CAPN3-203ENST00000349748 USP47Q96K76 1375 aa13.32□□□□□ -0.28
CAPN3-203ENST00000349748 EFCAB2Q5VUJ9 269 aa13.32□□□□□ -0.28
CAPN3-203ENST00000349748 TAF3Q5VWG9 929 aa13.32□□□□□ -0.28
CAPN3-203ENST00000349748 AEBP1Q8IUX7 1158 aa13.32□□□□□ -0.28
CAPN3-203ENST00000349748 ABCC10Q5T3U5 1492 aa13.31□□□□□ -0.28
CAPN3-203ENST00000349748 BCORL1Q5H9F3 1711 aa13.31□□□□□ -0.28
CAPN3-203ENST00000349748 ROCK1Q13464 1354 aa13.31□□□□□ -0.28
CAPN3-203ENST00000349748 DNMT1P26358 1616 aaKnown RBP13.31□□□□□ -0.28
CAPN3-203ENST00000349748 MAPK8IP3Q9UPT6 1336 aa13.31□□□□□ -0.28
CAPN3-203ENST00000349748 IRX3P78415 501 aaPredicted RBP13.31□□□□□ -0.28
CAPN3-203ENST00000349748 ZNF771Q7L3S4 317 aaPredicted RBP13.31□□□□□ -0.28
CAPN3-203ENST00000349748 NLRP13Q86W25 1043 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms