RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 CD109Q6YHK3 1445 aa13.08□□□□□ -0.32
ATG4A-202ENST00000345734 NBPF8Q3BBV2 869 aa13.07□□□□□ -0.32
ATG4A-202ENST00000345734 INO80Q9ULG1 1556 aaPredicted RBP13.07□□□□□ -0.32
ATG4A-202ENST00000345734 IQGAP3Q86VI3 1631 aa13.07□□□□□ -0.32
ATG4A-202ENST00000345734 ATP7AQ04656 1500 aa13.06□□□□□ -0.32
ATG4A-202ENST00000345734 SGIP1Q9BQI5 828 aa13.06□□□□□ -0.32
ATG4A-202ENST00000345734 MAGI2Q86UL8 1455 aa13.05□□□□□ -0.32
ATG4A-202ENST00000345734 DDX10Q13206 875 aaKnown RBP13.04□□□□□ -0.32
ATG4A-202ENST00000345734 MYT1LQ9UL68 1186 aa13.04□□□□□ -0.32
ATG4A-202ENST00000345734 CFAP74Q9C0B2 1584 aa13.03□□□□□ -0.32
ATG4A-202ENST00000345734 HSPA5P11021 654 aaKnown RBP13.03□□□□□ -0.32
ATG4A-202ENST00000345734 KIDINS220Q9ULH0 1771 aa13.02□□□□□ -0.32
ATG4A-202ENST00000345734 PRKAR2AP13861 404 aaKnown RBP13.02□□□□□ -0.33
ATG4A-202ENST00000345734 PLA2R1Q13018 1463 aa13.02□□□□□ -0.33
ATG4A-202ENST00000345734 ZNF518AQ6AHZ1 1483 aa13□□□□□ -0.33
ATG4A-202ENST00000345734 DEPDC5O75140 1603 aa13□□□□□ -0.33
ATG4A-202ENST00000345734 ZNF467Q7Z7K2 595 aaPredicted RBP13□□□□□ -0.33
ATG4A-202ENST00000345734 EIF4G2P78344 907 aaKnown RBP eCLIP12.99□□□□□ -0.33
ATG4A-202ENST00000345734 ZNF326Q5BKZ1 582 aaKnown RBP12.99□□□□□ -0.33
ATG4A-202ENST00000345734 CADPS2Q86UW7 1296 aa12.99□□□□□ -0.33
ATG4A-202ENST00000345734 POGZQ7Z3K3 1410 aa12.99□□□□□ -0.33
ATG4A-202ENST00000345734 YTHDC1Q96MU7 727 aaKnown RBP12.98□□□□□ -0.33
ATG4A-202ENST00000345734 CCDC144AA2RUR9 1427 aa12.98□□□□□ -0.33
ATG4A-202ENST00000345734 DHX29Q7Z478 1369 aaKnown RBP12.98□□□□□ -0.33
ATG4A-202ENST00000345734 MAP3K4Q9Y6R4 1608 aa12.98□□□□□ -0.33
ATG4A-202ENST00000345734 CCDC61Q9Y6R9 512 aa12.98□□□□□ -0.33
ATG4A-202ENST00000345734 KDM5CP41229 1560 aa12.97□□□□□ -0.33
ATG4A-202ENST00000345734 E9PCH4 1651 aa12.97□□□□□ -0.33
ATG4A-202ENST00000345734 KIF3BO15066 747 aa12.97□□□□□ -0.33
ATG4A-202ENST00000345734 RYDENQ9NUL5 291 aaKnown RBP12.97□□□□□ -0.33
ATG4A-202ENST00000345734 NEO1Q92859 1461 aa12.96□□□□□ -0.33
ATG4A-202ENST00000345734 EIF2AK4Q9P2K8 1649 aaKnown RBP12.96□□□□□ -0.33
ATG4A-202ENST00000345734 PDAP1Q13442 181 aaKnown RBP12.96□□□□□ -0.33
ATG4A-202ENST00000345734 UHRF1BP1Q6BDS2 1440 aa12.95□□□□□ -0.34
ATG4A-202ENST00000345734 MROH1Q8NDA8 1641 aa12.95□□□□□ -0.34
ATG4A-202ENST00000345734 DCAF11Q8TEB1 546 aa12.95□□□□□ -0.34
ATG4A-202ENST00000345734 ATP10AO60312 1499 aa12.95□□□□□ -0.34
ATG4A-202ENST00000345734 WASHC2AQ641Q2 1341 aa12.94□□□□□ -0.34
ATG4A-202ENST00000345734 GLI2P10070 1586 aa12.94□□□□□ -0.34
ATG4A-202ENST00000345734 VWDEQ8N2E2 1590 aa12.94□□□□□ -0.34
ATG4A-202ENST00000345734 HECW2Q9P2P5 1572 aa12.94□□□□□ -0.34
ATG4A-202ENST00000345734 RAPGEF3O95398 923 aa12.94□□□□□ -0.34
ATG4A-202ENST00000345734 MLH3Q9UHC1 1453 aa12.94□□□□□ -0.34
ATG4A-202ENST00000345734 SPATA31E1Q6ZUB1 1445 aa12.94□□□□□ -0.34
ATG4A-202ENST00000345734 RGL3Q3MIN7 710 aa12.94□□□□□ -0.34
ATG4A-202ENST00000345734 TET3O43151 1660 aa12.93□□□□□ -0.34
ATG4A-202ENST00000345734 C11orf95C9JLR9 678 aaPredicted RBP12.93□□□□□ -0.34
ATG4A-202ENST00000345734 A2MP01023 1474 aa12.93□□□□□ -0.34
ATG4A-202ENST00000345734 PRDM15P57071 1507 aaPredicted RBP12.93□□□□□ -0.34
ATG4A-202ENST00000345734 KANK1Q14678 1352 aa12.92□□□□□ -0.34
ATG4A-202ENST00000345734 PSEN1P49768 467 aa12.92□□□□□ -0.34
ATG4A-202ENST00000345734 FAM69CQ0P6D2 419 aa12.92□□□□□ -0.34
ATG4A-202ENST00000345734 ABCA6Q8N139 1617 aa12.92□□□□□ -0.34
ATG4A-202ENST00000345734 FRMPD1Q5SYB0 1578 aa12.92□□□□□ -0.34
ATG4A-202ENST00000345734 DIP2BQ9P265 1576 aa12.92□□□□□ -0.34
ATG4A-202ENST00000345734 RALGAPBQ86X10 1494 aa12.92□□□□□ -0.34
ATG4A-202ENST00000345734 TSPOAP1O95153 1857 aa12.92□□□□□ -0.34
ATG4A-202ENST00000345734 SPHKAPQ2M3C7 1700 aa12.91□□□□□ -0.34
ATG4A-202ENST00000345734 RICTORQ6R327 1708 aa12.91□□□□□ -0.34
ATG4A-202ENST00000345734 ERICH6Q7L0X2 663 aa12.91□□□□□ -0.34
ATG4A-202ENST00000345734 MFRPQ9BY79 579 aa12.91□□□□□ -0.34
ATG4A-202ENST00000345734 IFNL1Q8IU54 200 aa12.9□□□□□ -0.34
ATG4A-202ENST00000345734 USP47Q96K76 1375 aa12.9□□□□□ -0.34
ATG4A-202ENST00000345734 RNF17Q9BXT8 1623 aaKnown RBP12.89□□□□□ -0.35
ATG4A-202ENST00000345734 CENPBP07199 599 aaPredicted RBP12.89□□□□□ -0.35
ATG4A-202ENST00000345734 TRPM2O94759 1503 aa12.89□□□□□ -0.35
ATG4A-202ENST00000345734 CEP152O94986 1710 aa12.89□□□□□ -0.35
ATG4A-202ENST00000345734 PTPRTO14522 1441 aa12.89□□□□□ -0.35
ATG4A-202ENST00000345734 PRAG1Q86YV5 1406 aa12.88□□□□□ -0.35
ATG4A-202ENST00000345734 CLTCL1P53675 1640 aa12.88□□□□□ -0.35
ATG4A-202ENST00000345734 CCDC7Q96M83 1385 aa12.88□□□□□ -0.35
ATG4A-202ENST00000345734 POLR1AO95602 1720 aaPredicted RBP12.88□□□□□ -0.35
ATG4A-202ENST00000345734 KCNV2Q8TDN2 545 aa12.88□□□□□ -0.35
ATG4A-202ENST00000345734 PPRC1Q5VV67 1664 aaKnown RBP12.87□□□□□ -0.35
ATG4A-202ENST00000345734 BCORL1Q5H9F3 1711 aa12.87□□□□□ -0.35
ATG4A-202ENST00000345734 CARD11Q9BXL7 1154 aa12.87□□□□□ -0.35
ATG4A-202ENST00000345734 CFAP65Q6ZU64 1925 aaKnown RBP12.87□□□□□ -0.35
ATG4A-202ENST00000345734 DIP2CQ9Y2E4 1556 aa12.87□□□□□ -0.35
ATG4A-202ENST00000345734 TRPM1Q7Z4N2 1603 aa12.87□□□□□ -0.35
ATG4A-202ENST00000345734 MAP3K13O43283 966 aa12.86□□□□□ -0.35
ATG4A-202ENST00000345734 EFCAB6Q5THR3 1501 aa12.86□□□□□ -0.35
ATG4A-202ENST00000345734 ANP32CO43423 234 aa12.85□□□□□ -0.35
ATG4A-202ENST00000345734 PPP1R37O75864 691 aa12.85□□□□□ -0.35
ATG4A-202ENST00000345734 FXR2P51116 673 aaKnown RBP eCLIP12.85□□□□□ -0.35
ATG4A-202ENST00000345734 KIF7Q2M1P5 1343 aa12.85□□□□□ -0.35
ATG4A-202ENST00000345734 GGT6Q6P531 493 aa12.85□□□□□ -0.35
ATG4A-202ENST00000345734 YEATS2Q9ULM3 1422 aa12.85□□□□□ -0.35
ATG4A-202ENST00000345734 ROCK2O75116 1388 aaKnown RBP12.85□□□□□ -0.35
ATG4A-202ENST00000345734 CABP2Q9NPB3 220 aa12.85□□□□□ -0.35
ATG4A-202ENST00000345734 LMTK2Q8IWU2 1503 aa12.84□□□□□ -0.35
ATG4A-202ENST00000345734 ZNF579Q8NAF0 562 aaKnown RBP12.84□□□□□ -0.35
ATG4A-202ENST00000345734 UGGT1Q9NYU2 1555 aa12.84□□□□□ -0.35
ATG4A-202ENST00000345734 NBPF1Q3BBV0 1214 aa12.83□□□□□ -0.35
ATG4A-202ENST00000345734 EFCAB3Q8N7B9 438 aa12.83□□□□□ -0.35
ATG4A-202ENST00000345734 WDR70Q9NW82 654 aa12.83□□□□□ -0.35
ATG4A-202ENST00000345734 KIF13AQ9H1H9 1805 aa12.83□□□□□ -0.36
ATG4A-202ENST00000345734 CNTLNQ9NXG0 1405 aa12.83□□□□□ -0.36
ATG4A-202ENST00000345734 ST20-MTHFSA0A0A6YYL1 179 aa12.81□□□□□ -0.36
ATG4A-202ENST00000345734 PAK3O75914 559 aaPredicted RBP12.81□□□□□ -0.36
ATG4A-202ENST00000345734 ABCC3O15438 1527 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms